CI01000027_03014464_03027710 (E430025E21RIK, STRUMPELLIN, KIAA0196)


Basic Information

Item Value
gene id CI01000027_03014464_03027710
gene name E430025E21RIK, STRUMPELLIN, KIAA0196
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 3013856 ~ 3027862 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_03014464_03027710.mRNA
GTTTAAAAATGAGGAAAACGTGATTAAAGAGACGCAAATAGGGTATCCTGTGGTACACAAATGTTTACCCATGTAAAGAATCACTCAAATAAACGTTTAAACGTCAACTGTGAGACTTTTATTTTGAAGCGGTTGACCAGTACGCAGCCATTTAGCCTAAGCGCTGGGCGGAGCGACCAATGAGCTCCCCTCGTGACACCCACGTGATTTGTAAACAGGAAGTGTCTGATCTATATACTGCTGGGGGTGAGTGACCAGAATCTAAAATCAACAAACATAATTTAATCATATAAACGAATTTTATGTGTGGATTTGGCTATTATAGTGCATAACTTCATTCATAGTGAACCGTGCGTTCGTACCATTTGACCGCAGATTGATCAATTTTGAGCAATAAACAGTAGATTGTTATTGAAATATATTATGGAAAAAAATTAATTTGAGGTCAGAGTTGTGTAAAATGACTTTATGTACATCTGTAATGATGGCAGTCAATAAAGTGGTTAGTGTGGAAAAGTAATGCTTTTTTATTGAATATTATCAGATCTAGCCGTCACTGAGGAGAGACTGAATGATCAGAGAGCAGATCTGCTGTTTCCTTCCTCATCATGGTGGATTTTCTGGCAGAGAACAACCTGTGTGGTCAGGCCATCCTGAGGATTGTGTCCAGAGGAAATGCCATCATAGCAGAATTACTGAGACTGTCAGACTTTATTCCTGCAGTTTTCAGACTCAAAGACAAGACTGACCAGCAGAAATATGGAGACATCATCTGTGATTTCAGCTACTTTAAGGGTCAGGAGTATTATGAGGGTAAACTAGAAGCAAAGCCGGAGCTACAGGATTTGGATGAGGAGTTTCGGGAAAACAACATAGAAATATTGACACGGTTCTACCTGGCCTTTGAGAGTGTCCATAAATATGTTGTAGACTTGATAAGGTACTTGGATGATCTCAATGAAGGGGTCTATATTCAACAAACGCTGGAAACTGTTTTACTAAATGAAGATGGGAAACAGCTCCTGTGTGAGGCTCTGTACCTGTATGGAGTCATGTTACTGGTCATTGATCAGAAGATGGAGGGGGAGGTGAGAGAAAGGATGCTGGTGTCCTACTACAGATACAGCGCTGCTCGCTCCTCAGGCGACTCCAACCTGGATGACATCTGCAAGCTCTTGCGTAGTACAGGATACTCCAGCCACCCGGGAGCCAAGCGGCCGCCCAACTACCCCGAGAGCTACTTCCAGAGAGTTCCCATAAGCCCCACCTTCATCAGTATGGTGATCGGCCGCCTCCGCTCTGATGACATTTACAACCAGGTGTCTGCGTATCCTCTGCCGGAGCACCGTAGTACAGCGCTGGCCACGCAGGCCGCTATGCTGTGTGTCTGCTTATATTTCACCCCCTCCATCCTGCACACACAACAGGCCAAGATGAGAGAGATCGTGGACAAATACTTCCCTGACAACTGGGTTATAAGCATATACATGGGGATCACTGTGAACTTGGTGGAGGCATGGGAACCGTATAAAGCAGCTAAAACGGCCCTGAACTACACGCTGGAGACAGCCAACATCAGAGAGCAGGCCGGTCGATACGCTGCCAGTGTGGAGAGTTTGCGGCCGCAGGTGCAGCAGTTGTTGAAGGAGGGATTCCTGAGAGAAGAAATCGTCCTGGACAACATTCCCAAACTGCTCAACTGTCTTCGTGACTGTAACGTTGCCATCCGCTGGCTGATGCTGCACACTGCTGAGTCCGCTTATGATCCAAACAACAAGAGACTGCGTCAGATCAAAGAGCAAGTCATCAACGACTCCAAATACAATCCCAAAATTCTGTTTCAGCTGCTGCTGGACACAGCCCAGTTCGAGTTCATACTCAAAGAGATGTTCAAGCAGATGTTGGCAGAGAAGCAGCTCAAGTGGGAGAGCTATAAGAAGGAGGGATCAGAGAGAATGATGGAGCTAGCCGAGGTGTTTTCTGGGGTCAAACCTCTCACCAGGGTAGAGAAAAATGAAAATCTTCAGGCCTGGTTCAGAGAGATCTCCAAACAGATCGAGTCCCTGAACTATGAGGACTCGACCGCTGCTGGCAGGAAGACTGTGCAGCTCATTCAGGCTCTTGTGGAGGTCCAAGAGTTTCACCAGCTGGAGTCGAACCTGCAGGTGTGTCAGTTCCTGGCGGACACACGCAAGTTCCTCCATCAGATGATCCGCACCATCAATATCAAAGAAGAAGTGCTAATCACAATGCAGATAGTGGGGGATTTGTCCTACGCCTGGCAGATCATTGACAGCTTCACCTCAATTATGCAAGAGAGCATCAGAGCAAACCCCTCGATGGTGACCAAACTCAGAGCCACTTTTCTAAAGCTGGCGTCTGCGCTGGATCTGCCTCTCCTACGAATAAACCAGGTCAACAGTCCAGATCTGCTCAGCGTGTCTCAGTTTTACTCTGGGGAGCTGGTGGCTTATGTCAGAAAGGTACTGCAGATCATTCCAGAGAGTATGTTCACCTCGCTGGCCAAAATCATCAAACTGCAGATCCATGACATTATGGAGGTGCCCACACGTCTGGACAAAGACAAACTGAAGGACTACTCTCAACTCAGTGCCCGTTATGAGGTAGCGAAACTCACTCATGCCATCTCAGTCTTCACCGAAGGTATTCTGATGATGAAGACCACACTTGTCGGCATTATAAAGGTGGATCCGAAGCAGCTTCTGGAGGACGGGATCAGGAAAGAGCTTGTCAAACGCGTGGTTTACGCTCTGCACAAAGGCCTCATCTTCAACCCCAAAGCCAAAAACGTCATATTGCTTCTCTTTCAGTCCAGTGAGCTGATGCCAAAGCTGAAGGAAATGGCTGCCACCATGGATGGGTTTTATCGCTCTTTTGAATACATTCAGGATTACGTGAGCATCTACGGACTGAAGATCTGGCAGGAGGAAGTGTCTCGCATCATCAACTACAACGTAGAGCAGGAGTGTAACAGTTTCCTCAGGACGAAGATCCAAGACTGGCAAAGCGTCTACCAGTCCACCCACATTCCCATTCCTAAGTATCCGTCTGTTGATGAATCCGCCACGTTTATTGGACGTCTTTGCAGGGAAATCCTGAGGATCACAGATCCAAAAATGACGTGTTACATTGACCAGCTGAACACCTGGTACGATTTGAAGATGCATCAGGAAGTGACCAACAACCGACTCTTCTCTGAGATTCAAGACACGCTGGGAACCTTCGGCCTGAACGGACTCGACAGACTCTTGTGTTTCATGATCGTGAAGGAGCTGCAGGGATCGTGGGTATGTGTGTTGATGCACTACCATAAGTCTGACACTTATTCCCACAATAATGTTCTTGATATTTTTGTTTTTCTGCATCAATATTCAGCAAATGCAAGCAAAGTCTACGCCAATGCTGTGGCCAAAACCCAGAAGATTTGGGCAGCTTATCTGGAAGCCATCATGAAGGTGGGTCAGATGCAGATCTTGAGGCAGCAGATCGCCAACGAATTGAATTACTCCTGCAAGTTTGACTCAAAACACCTCGCTGCAGCGCTGGATAATTTGAACAAGTCTCTGCTGTCCGATATTGAAGCACATTACCAGGATCCATCGCTGCCGTATCCCAAAGAGGACAACACCCTGCTCTACGACATCACCGCCTATCTGGAGGCGGCCGGAATCCACAACCCACTAAACAAAATCTACATCACGACGAAGCGCCTGCCTTATTTTCCCATTGTGAACTTCCTGTTCCTCATCGCGCAGTTGCCAAAACTTCAGTACAATAAAACCCAAGGGATGACATGCAGGAAGGCAGCAGATCCAGTGGATTGGGCTCCTCTGGTCCTGGGTCTCCTGACGCTGCTCAAACAGTTTCACTCCAGATACACAGAACAGTTCCTTGCTCTGATTGGACAGTTTATTCGCTCCATAATGGAGCAGTGCACCAGTCAGAAGATCCCAGACATGCCTTCAGATGTAGTCGGAGCGTTAATGTTTCTGGAGGACTATGTGCGTTACACTAAACTGCCCAGAAAGGTGGCAGAGGCTCATGTGCCGAGTTTCATCTTCGATGAATTCAGGACTGTGCTGTAAACATGCCTGTCATAATGTCAAATCATGTTTGTTATCGTTCATCTTTCTCTTAAAGCACTAATGAAAATGAGTAATTAGCATTTTTAACATTTCAATTTTAAAACATGATCTTTTGTAGCTGTGACTGACTTTTGTCTGTCTGCTGTGGTGTA

Function

GO:

id name namespace
GO:0048666 neuron development biological_process

KEGG:

id description
K18464 RTSC, SPG8; WASH complex subunit strumpellin

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_03014464_03027710.mRNA True 4258 mRNA 0.47 27 3013856 3027862

Neighbor

gene id symbol gene type direction distance location
CI01000027_03008262_03011156 NA coding upstream 1861 3008262 ~ 3011995 (+)
CI01000027_02995394_03005981 ATAD2 coding upstream 7859 2995394 ~ 3005997 (+)
CI01000027_02991231_02994560 PSMA2 coding upstream 19139 2991231 ~ 2994717 (+)
CI01000027_02981155_02982628 NA coding upstream 30971 2981011 ~ 2982885 (+)
CI01000027_02941870_02946290 OXR1 coding upstream 65959 2941870 ~ 2948777 (+)
CI01000027_03110196_03113083 NA coding downstream 81345 3109207 ~ 3113409 (+)
CI01000027_03142352_03156415 NA coding downstream 114248 3142110 ~ 3157077 (+)
CI01000027_03159177_03163102 NA coding downstream 131107 3158969 ~ 3163325 (+)
CI01000027_03174793_03181990 NA coding downstream 146931 3174793 ~ 3182308 (+)
CI01000027_03202787_03208051 MTX1A coding downstream 174925 3202787 ~ 3208301 (+)
G138817 NA non-coding upstream 24923 2988688 ~ 2988933 (+)
G138802 NA non-coding upstream 43048 2963817 ~ 2970808 (+)
G138775 NA non-coding upstream 280561 2732818 ~ 2733295 (+)
G138687 NA non-coding upstream 291497 2716814 ~ 2722359 (+)
G138828 NA non-coding downstream 88508 3116370 ~ 3116659 (+)
G138830 NA non-coding downstream 94429 3122291 ~ 3122705 (+)
G138831 NA non-coding downstream 95012 3122874 ~ 3123166 (+)
G138832 NA non-coding downstream 96935 3124797 ~ 3125029 (+)
G138833 NA non-coding downstream 97587 3125449 ~ 3125675 (+)
G138515 NA other upstream 1336996 1664408 ~ 1676860 (+)
G138436 NA other upstream 1506040 1506961 ~ 1507816 (+)
G138290 NA other upstream 2014675 995970 ~ 999181 (+)
G138247 NA other upstream 2144281 855388 ~ 893121 (+)
G138238 NA other upstream 2182173 829774 ~ 831683 (+)
G138915 NA other downstream 456525 3484387 ~ 3486647 (+)
G138953 NA other downstream 474210 3502072 ~ 3520065 (+)
G140436 NA other downstream 1709536 4737398 ~ 4774262 (+)
G140440 NA other downstream 1752555 4780417 ~ 4785660 (+)
CI01000027_05050310_05055447 NA other downstream 2021061 5050310 ~ 5055755 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010984 washc5 coding NC_007127.7 CM002900.2 43291709 ~ 43317927 (-)