CI01000027_03117518_03132307 (RUNDC3B)


Basic Information

Item Value
gene id CI01000027_03117518_03132307
gene name RUNDC3B
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 3115633 ~ 3132307 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_03117518_03132307.mRNA
GTTCTCAGTGAAAACCCTCATTGATCGCTCATGTTTTGAGACGATAGACGACACATCTGCTGAGTTCATCAACTTTGTCTCCATTCTGGAGCATATTCTGAGCCATAGACTGAAAGGTCAGGTCAGCTGGTTTGGTTACGAGAGCCCGCGCAGTTTCTGGGATTACATACACGTGGCATGTATTAAAGTCCCACACAGCTGCATTCACAGCATCGAGAACATGGAGAACGTCCGCAGCTCTAGAGCAAAGGCTTTTGTGGTTGACAGGAGGTTTTATGAGGAGGGGGCTGTAGTTCTGGGGGAGGAGGCGGGGCTTCTGGCAGATACGCTGATTGGACTGAATGCCATTGACTTCAGTTTCTGTCTGAAAGGGGAGGGGCTTGATGAGAGCTGTCCCGTCGTCATTGACTACACACCGTACCTTAAATTCACACAAACTTCTGACAGCATCAGCAGCGATGAGGAGGAAATGAGAACGCTGGGCAGCAGCGGCAGTGAAGCAGGCACTCCTGAATCTCACATGGCCGCCAGTCTGATGGCCGATCAGAGCACCTGGTACAGCAAGAGCAAAAGGCTAGAGCAGAAATACAGAGTCGTGCTGGAACAGAAGTGTTATCTGGAGGAGCTGGTGCGTCTGAGGGAAGCTCAGCTGTCCGAGTCTGTCTCTCAGAATAAATCTCTACTGCAGCAGCTCACAGACACGGAAATCAGCCACAAAGTGGAGAAAGAGCAGCTGGAGATCATCATACTGGAGCTGCAGGATCAGCTGACGGTGCTGAAGAACCATGACCTGCGCTCCAGACAGGAGCTTACCTCACACCTGACAAACCAGTGGCCCTCACCTGGCACTTTGGATACCAATGCTGTTGCCTTGGATACGCTCCTGTACAGAAAACGCACAGGACCATGGGAGGAGAAAAGCTTCCAGAGTTTGGAGCAGCTTTCTGCGGATATGAGTCTCTCTCAGATGTCTCTCGATCCAGCACAACTGAACACTCACAGTCTGGACGGCAAGGCAGGACTTACACACTGGCACAGAGAAGGGAAAGAGGATACTCCGTCTCTGAGGGGTTTGTGTGGTTCGTTAACATCAATGGCCAGTTACAAATCTCTGGCCAGTCTGAAGTCCAGTGAATATCTGGCCAGTCCAACAACAGACATGACCAGCCCAGGACTGACCCCGTCCTGAACACAGAGACAAGTATGGACATATACACGCACACAGGCTTACGCATACACAAACGCACCATCCTGCTTGAGATGGTGTGGGCTTCAAACTGAGGAGAAGAAATGAAAACCTACCCATCGATACCAACCTCAGAGCTTCTAAGAGACATCAGACAAGATGATGACAACCCTGTGCTGTCCTGACTGGTTTTAGTTTAATTTGTGCGGTTTCATTTTCAAATGTTAACATTTGGTCGTTGAAGTCCATAGCTAGTGTAAGCATTAGCATTAGTGAATGTTGAGCATAATGAATCATGATGAATGACAATCTTGACTCAGGACATCAGTCAATTTCAGCTATTTGTGGAATACCCAGTTCAAATGACTGCTGTTTTTGCAAAGGCCATAGATACAGCATTTCCTGCTGCTTTATTTTGTGCTCCTGTTCTTAAAATTTGTCCGTAACGCAGAGTCATTGACCCCTGCTTAACTCTGATTGGCCTTCAGAAAATGGTCCTGGAAAATGATAGCCAAACACATCACAACACATCACAGCTACACTAGCACAGATACATAGGAAATTGGTTGTCTGAGCCAATGGCCAATTTATGATGATCTTTCACTATTTTATTTTATTTATTTTGTTTAATTTCATTTAATTTTATTGCCAACTAAAACAATTAACTTAAGGGGTTAGTTCACCCCAAAATGAAATTTATGTCATTAATTACTAACCTTCATATCGTTCCAAACCCGTAAGACCTTCGTTCATCTTCAGAACACAAATTAAGATATTTTTGATGAAATCCGAGAGCTTTCTGATCCTCCATAGACAGCAACGCAATTACCACTTTCAAGACCCAGAAAGGTAGTAAAGACAAAATAGTCCATGTGACTACAATGGTTCAACCTTAATGTTATGAAGTGATGAGAATACTTTTTGTGCGCAATAACAAAAAACAAAAATAACGACTTTATTCAACAATTTCTTCTCTTATGTGTCAGTCTGTTCACATTGTAAACACAGTGCAGCGCTTCTAGGTTTCACATGTATTCATTGTGGCGCTCACTTGAACAGCGTCGGAGACTTAACACGGAAGAAAAGAAATTGTTGAATAAAGACATTATTTTTGTTGTGTTTTTGGGCACAAAAAGTATTCTCGTCACTTCATAACATTAAGGTTGAACCACTGTAGTCACATGGACTATTTTAACGATGTCTTTACTACCTTTCTGGGCCTTGAAAGTAGTAATTGCGTTGCTGTCAATGGAGGATCAGAAGGCTCTCGGATTTAATCAAAAATATCTTCATTTGTGTTCCAAAAATGAACAAATGTCTTATGGGTTTGAAACAACATGTAGGGGAGTAATTAAAGACAGAATTTTCATTTTTGCGTGAACTAACCTTTAAAACAGCCTTAAAACAGCTTTCAAAATGTTAACATAAATGTATAGCTGTGATATTCAATAAGAAAAACATTTAGGATGTGACAATTTTATCCATTAGAAATTGTTGGGATTGTGAGAAGTGGGTGTTCTGTATAAGAATGTGGAAAATTGGATGATGGAACCCTAATAATATATAATTGTCCGATTATGACAGAGAAGTGTGAACAACACTTTCCATCTTTTGTCTTTTTGGGGTGTAAGAGGCATCTGATTTCAGACATTTCTCTGCTGTGCTGAATGTGGATGTTCATAATTTTTTTTCTGTCTCCGTGTTTCTCTCAAGTGTTTGAGAATCGCTCTATCCTCTTACACCAAGAGGACGTACATATTCATGAGTTCTGTGATTTACATATTCATACAACACTCAAACATCAGTTTTGCATTTTTTCCCGCCATCACTCAGAGATAGTGGCTAATGTGCTCTGGTGTAAAGCATTGCCATGTATTTTTATAATAAA
>TU159029
ATGAGAATACTTTTTGTGCGCAATAACAAAAAACAAAAATAACGACTTTATTCAACAATTTCTTCTCTTATGTGTCAGTCTGTTCACATTGTAAACACAGTGCAGCGCTTCTAGGTTTCACATGTATTCATTGTGGCGCTCACTTGAACAGCGTCGGAGACTTAACACGGAAGAAAAGAAATTGTTGAATAAAGACATTATTTTTGTTGTGTTTTTGGGCACAAAAAGTATTCTCGTCA

Function

symbol description
rundc3b Is expressed in brain; gut; habenula; and yolk syncytial layer. Orthologous to human RUNDC3B (RUN domain containing 3B).

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_03117518_03132307.mRNA False 3074 mRNA 0.42 10 3115633 3132307
TU159029 True 239 lncRNA 0.35 1 3116374 3116612

Neighbor

gene id symbol gene type direction distance location
CI01000027_03101390_03106479 NA coding downstream 9154 3101089 ~ 3106479 (-)
CI01000027_03035114_03099542 ADAM22 coding downstream 16091 3035114 ~ 3099542 (-)
CI01000027_02989304_02990854 NA coding downstream 124779 2989289 ~ 2990854 (-)
CI01000027_02984235_02987159 CCDC127, CCDC127A coding downstream 128474 2984007 ~ 2987159 (-)
CI01000027_02961909_02972343 RNF144B coding downstream 143290 2961764 ~ 2972343 (-)
CI01000027_03186359_03192441 NA coding upstream 53792 3186099 ~ 3192441 (-)
CI01000027_03261114_03264008 POLR3GLB, POLR3GL coding upstream 128807 3261114 ~ 3264008 (-)
CI01000027_03297095_03298505 NA coding upstream 164725 3297032 ~ 3299512 (-)
CI01000027_03301041_03302954 NA coding upstream 168593 3300900 ~ 3303506 (-)
CI01000027_03371533_03388330 DPY19L1L coding upstream 238942 3371249 ~ 3389135 (-)
G139939 NA non-coding downstream 1447 3112268 ~ 3114186 (-)
G139883 NA non-coding downstream 167717 2947331 ~ 2947916 (-)
G139929 NA non-coding downstream 185867 2929308 ~ 2929766 (-)
G139845 NA non-coding downstream 260033 2788349 ~ 2855600 (-)
G139743 NA non-coding downstream 377562 2737348 ~ 2738071 (-)
G139972 NA non-coding upstream 5500 3137807 ~ 3138013 (-)
G139967 NA non-coding upstream 26088 3158395 ~ 3159374 (-)
G139980 NA non-coding upstream 27743 3160050 ~ 3160407 (-)
G139998 NA non-coding upstream 64163 3196470 ~ 3196703 (-)
G140011 NA non-coding upstream 97006 3229313 ~ 3231412 (-)
CI01000027_02226447_02227499 NA other downstream 887608 2225781 ~ 2227499 (-)
CI01000027_02119227_02124423 NA other downstream 989605 2119131 ~ 2125142 (-)
CI01000027_01303308_01319462 NR2F5, NR2F1, NR2F1.L, NR2F2 other downstream 1795472 1302034 ~ 1321178 (-)
CI01000027_01241417_01245177 NA other downstream 1868656 1240478 ~ 1246267 (-)
G139117 NA other downstream 2878054 234212 ~ 237579 (-)
G140118 NA other upstream 369227 3509352 ~ 3584679 (-)
CI01000027_03787377_03788902 NA other upstream 655071 3787377 ~ 3790279 (-)
CI01000027_03922380_03931033 NA other upstream 790089 3922242 ~ 3931033 (-)
G141481 NA other upstream 1239940 4372247 ~ 4412810 (-)
G141488 NA other upstream 1375168 4507475 ~ 4508971 (-)

Expression


Co-expression Network