XLOC_008521 (gosr1)


Basic Information

Item Value
gene id XLOC_008521
gene name gosr1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 24795473 ~ 24837655 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017046
TCGAATCTCCGCCTCTGCCAGCGTCACCGCGGATGACGTGCAACAACAAAGATGGCAGGAGGAAACAGCAACTATTGGGAAGACCTGCGGAAGCAGGCGAGGCAGCTGGAGAATGAGCTGGACCTGAAGCTTGTGTCCTTCAGTAAGCTCTGCACCAGTTACAGCAGCTCTCGGGACGGCCGCAGAGGAGACAGTAGCTCCGATACAACACCTCTGCTCTGCAACTCCACTCAGGACAGAATGTTTGAGACCATGTCTGTGGAGATTGAGCAGTTACTTGCAAAActGACGGGGGTGAATGACAAGATGGCTGAATATACAAGCACACCGGGAGTAACGTCTCTGAACGCTGCTCTGATGCACACTCTCCAGAGACACAGAGACATCCTACAGGACTACACACATGAATTTCATAAAACCAAATCAAACTTCATGGCAATCAGGGAGAGAGAGGACCTTTTGGGATCTGTGAGAAAAGACATTGAGACATATAAGAGTGGCTCAGGGGTGAATAACAGGCGGACAGAGCTCTTTCTGAAAGAACACGAACACCTGAGAAACTCGGATCGACTTATCGATGACACAATTAGCATTGCCATGGCCACCAAGGAGAACATGACCTCCCAACGTGGTCTGTTGAAGTCTATACAGAGCAGGGTCAACACCCTGGCCAACCGCTTTCCTGCCATCAATAACCTAATACAGCGAATCAACCTGAGAAAGAGGCGGGACTCGTTAATTCTGGGAGGAGTCATCGGCATCTGCACCATCCTTCTTCTGCTGTATGCGTTTCACTGACAGACAGAGGAGCTGAGCGACTTTTTTGGGGGGTGTTCTGCAGAGCAGTGGCGAAGCCGTGAGGAAGGGCTCAATG
>TCONS_00017047
CTCTGCCAGCGTCACCGCGGATGACGTGCAACAACAAAGATGGCAGGAGGAAACAGCAACTATTGGGAAGACCTGCGGAAGCAGGCGAGGCAGCTGGAGAATGAGCTGGACCTGAAGCTTGTGTCCTTCAGTAAGCTCTGCACCAGTTACAGCAGCTCTCGGGACGGCCGCAGAGGAGACAGCTCCGATACAACACCTCTGCTCTGCAACTCCACTCAGGACAGAATGTTTGAGACCATGTCTGTGGAGATTGAGCAGTTACTTGCAAAActGACGGGGGTGAATGACAAGATGGCTGAATATACAAGCACACCGGGAGTAACGTCTCTGAACGCTGCTCTGATGCACACTCTCCAGAGACACAGAGACATCCTACAGGACTACACACATGAATTTCATAAAACCAAATCAAACTTCATGGCAATCAGGGAGAGAGAGGACCTTTTGGGATCTGTGAGAAAAGACATTGAGACATATAAGAGTGGCTCAGGGGTGAATAACAGGCGGACAGAGCTCTTTCTGAAAGAACACGAACACCTGAGAAACTCGGATCGACTTATCGATGACACAATTAGCATTGCCATGGCCACCAAGGAGAACATGACCTCCCAACGTGGTCTGTTGAAGTCTATACAGAGCAGGGTCAACACCCTGGCCAACCGCTTTCCTGCCATCAATAACCTAATACAGCGAATCAACCTGAGAAAGAGGCGGGACTCGTTAATTCTGGGAGGAGTCATCGGCATCTGCACCATCCTTCTTCTGCTGTATGCGTTTCACTGACAGACAGAGGAGCTGAGCGACTTTTTTGGGGGGTGTTCTGCAGAGCAGTGGCGAAGCCGTGAGGAAGGGCTC
>TCONS_00017048
AACAGCAACTATTGGGAAGGTGAGGTGGCAAAGCGTTACAAATTCCACTCGACCAAAAGCTTTATTGCGCTCTGTGACAGCTCACGCCGATGCCTTCTTCTGAATGATATTTGACCTGCGGAAGCAGGCGAGGCAGCTGGAGAATGAGCTGGACCTGAAGCTTGTGTCCTTCAGTAAGCTCTGCACCAGTTACAGCAGCTCTCGGGACGGCCGCAGAGGAGACAGTAGCTCCGATACAACACCTCTGCTCTGCAACTCCACTCAGGACAGAATGTTTGAGACCATGTCTGTGGAGATTGAGCAGTTACTTGCAAAActGACGGGGGTGAATGACAAGATGGCTGAATATACAAGCACACCGGGAGTAACGTCTCTGAACGCTGCTCTGATGCACACTCTCCAGAGACACAGAGACATCCTACAGGACTACACACATGAATTTCATAAAACCAAATCAAACTTCATGGCAATCAGGGAGAGAGAGGACCTTTTGGGATCTGTGAGAAAAGACATTGAGACATATAAGAGTGGCTCAGGGGTGAATAACAGGCGGACAGAGCTCTTTCTGAAAGAACACGAACACCTGAGAAACTCGGATCGACTTATCGATGACACAATTAGCATTGCCATGGCCACCAAGGAGAACATGACCTCCCAACGTGGTCTGTTGAAGTCTATACAGAGCAGGGTCAACACCCTGGCCAACCGCTTTCCTGCCATCAATAACCTAATACAGCGAATCAACCTGAGAAAGAGGCGGGACTCGTTAATTCTGGGAGGAGTCATCGGCATCTGCACCATCCTTCTTCTGCTGTATGCGTTTCACTGACAGACAGAGGAGCTGAGCGACTTTTTTGGGGGGTGTTCTGCAGAGCAGTGGCGAAGCCGTGAGGAAGGGCTCAATGAAAGGTGGACCATTGGGGCCACGAAGCAGAAACCTGCCTGGCCTAGTCTGGAAACAGGATTGATTGTGGCCAGCATGGACCTTATTTGTATTTAGCATCGGGAGGGGTTTAGATCTAACAGCCCTTTTTGTTTCTGTACTACAAACAATGTGCTGTTCAGATGTGAGCTGGGACTGAAGACCAAATTGCTAACAGGAATAGATTTCAAAGAGCATAATTATAACACAATAGCTTTGACAAAATGGTGATGCTGTGAAGCGTCAACTTGTGCTGTTCCTGTATATTATTAATCGGAAAAGGGTTTTAATTTGATGATCCTTTTAGTAAGAGGGTTTCTCATCATGCTGTGTACTttgtgaattaataaattattcatatacAGGATATTAAAAATGTGTGTCAAACACTCGA
>TCONS_00017049
ATTGGGAAGGTGAGGTGGCAAAGCGTTACAAATTCCACTCGACCAAAAGCTTTATTGCGCTCTGTGACAGCTCACGCCGATGCCTTCTTCTGAATGATATTTGGTGACGATTCAAtgaaaactcaaacagACCTGCGGAAGCAGGCGAGGCAGCTGGAGAATGAGCTGGACCTGAAGCTTGTGTCCTTCAGTAAGCTCTGCACCAGTTACAGCAGCTCTCGGGACGGCCGCAGAGGAGACAGTAGCTCCGATACAACACCTCTGCTCTGCAACTCCACTCAGGACAGAATGTTTGAGACCATGTCTGTGGAGATTGAGCAGTTACTTGCAAAActGACGGGGGTGAATGACAAGATGGCTGAATATACAAGCACACCGGGAGTAACGTCTCTGAACGCTGCTCTGATGCACACTCTCCAGAGACACAGAGACATCCTACAGGACTACACACATGAATTTCATAAAACCAAATCAAACTTCATGGCAATCAGGGAGAGAGAGGACCTTTTGGGATCTGTGAGAAAAGACATTGAGACATATAAGAGTGGCTCAGGGGTGAATAACAGGCGGACAGAGCTCTTTCTGAAAGAACACGAACACCTGAGAAACTCGGATCGACTTATCGATGACACAATTAGCATTGCCATGGCCACCAAGGAGAACATGACCTCCCAACGTGGTCTGTTGAAGTCTATACAGAGCAGGGTCAACACCCTGGCCAACCGCTTTCCTGCCATCAATAACCTAATACAGCGAATCAACCTGAGAAAGAGGCGGGACTCGTTAATTCTGGGAGGAGTCATCGGCATCTGCACCATCCTTCTTCTGCTGTATGCGTTTCACTGACAGACAGAGGAGCTGAGCGACTTTTTTGGGGGGTGTTCTGCAGAGCAGTGGCGAAGCCGTGAGGAAGGGCTCAATGAAAGGTGGACCATTGGGGCCACGAAGCAGAAACCTGCCTGGCCTAGTCTGGAAACAGGATTGATTGTGGCCAGCATGGACCTTATTTGTATTTAGCATCGGGAGGGGTTTAGATCTAACAGCCCTTTTTGTTT

Function

symbol description
gosr1 Predicted to enable SNAP receptor activity. Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport; regulation of vesicle targeting, to, from or within Golgi; and vesicle fusion. Predicted to act upstream of or within protein transport and vesicle-mediated transport. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of membrane. Predicted to be part of SNARE complex. Predicted to be active in Golgi medial cisterna; Golgi membrane; and cis-Golgi network. Orthologous to human GOSR1 (golgi SNAP receptor complex member 1).

GO:

id name namespace
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport biological_process
GO:0006906 vesicle fusion biological_process
GO:0048209 regulation of vesicle targeting, to, from or within Golgi biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0015031 protein transport biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0005797 Golgi medial cisterna cellular_component
GO:0005801 cis-Golgi network cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0031201 SNARE complex cellular_component
GO:0005484 SNAP receptor activity molecular_function

KEGG:

id description
ko04130 SNARE interactions in vesicular transport
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-050417-133 Predicted to enable SNAP receptor activity. Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport; regulation of vesicle targeting, to, from or within Golgi; and vesicle fusion. Predicted to act upstream of or within protein transport and vesicle-mediated transport. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of membrane. Predicted to be part of SNARE complex. Predicted to be active in Golgi medial cisterna; Golgi membrane; and cis-Golgi network. Orthologous to human GOSR1 (golgi SNAP receptor complex member 1).

Ensembl:

ensembl_id ENSDARG00000026654

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017046 False 874 mRNA 0.51 9 24795473 24837244
TCONS_00017047 False 855 mRNA 0.51 9 24795485 24837240
TCONS_00017048 False 1316 mRNA 0.46 9 24795536 24837655
TCONS_00017049 True 1055 mRNA 0.49 9 24795546 24837377

Neighbor

gene id symbol gene type direction distance location
XLOC_008520 cpda coding upstream 863 24756860 ~ 24794610 (+)
XLOC_008519 ywhae1 coding upstream 40578 24746444 ~ 24754895 (+)
XLOC_008518 LRRC75A coding upstream 50553 24691088 ~ 24744920 (+)
XLOC_008517 poldip2 coding upstream 105213 24676905 ~ 24690260 (+)
XLOC_008516 smtnl coding upstream 124054 24644016 ~ 24671419 (+)
XLOC_008522 NA coding downstream 3636 24841291 ~ 24844913 (+)
XLOC_008523 CR942805.1 coding downstream 124481 24962136 ~ 24962252 (+)
XLOC_008524 NA coding downstream 169900 25007555 ~ 25053314 (+)
XLOC_008525 BX908796.2 coding downstream 190827 25028482 ~ 25054730 (+)
XLOC_008526 BX908796.1 coding downstream 218306 25055961 ~ 25062073 (+)
XLOC_008463 BX663520.1 misc upstream 3543191 21252191 ~ 21252282 (+)
XLOC_008515 NA non-coding upstream 176829 24616570 ~ 24618644 (+)
XLOC_008511 NA non-coding upstream 482351 24312556 ~ 24313122 (+)
XLOC_008508 NA non-coding upstream 589492 24179932 ~ 24205981 (+)
XLOC_008509 NA non-coding upstream 596976 24191710 ~ 24198497 (+)
XLOC_008507 NA non-coding upstream 633373 24149968 ~ 24162100 (+)

Expression


Co-expression Network