CI01000027_03335011_03357910 (SLC4A7)



Basic Information


Item Value
gene id CI01000027_03335011_03357910
gene name SLC4A7
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information


Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 3335011 ~ 3358277 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence


>CI01000027_03335011_03357910.mRNA
GACAGGTGGATAAAGTCTTTCTCTTTATAGGTCACAGGGCAGTTTATGTGGGCGTACATGTCCCTTTAGGAAGACAAAGCAGACGTAGACATCGCCACCGTGGTCACAAGCACCATCGGAAAAGGAAGGACAGAGGGTCTGAGCGAGAGGACGGGCGAGAATCACCATCATACGACACTCCCTCACAGAGGGTCCAGTTTATTCTCGGCACTGAGGATGATGATGAGGAGCATATTCCTCATGACCTCTTCACTGAGCTCGACGAGCTGTCTTTCCGTGATGGAAACGCTTACGAGTGGAAAGAGACAGCCAGGTGGTTGAAGTTTGAAGAGGATGTAGAGGATGGAGGAGAACGCTGGAGCAAGCCCTATGTCGCCACGCTTTCCCTGCACAGCCTGTTTGAGTTACGGAGCTGCATTCTCAATGGCACTGTCATGCTGGACATGAGAGCAAACACCATTGAGGAGATAGCAGACATGGTATTGGACAACATGGTGGCGTCTGAGCAGCTGGATGAGAGTTTGAGGGAGAAGGTGCGGGACGCCATGATGAAGAGACATCACCACCAGAATGAGAAGAAGCTCAGCAATCGCATCCCACTTGTACGCTCCTTCGCCGACATAGGCAAGAAACATTCAGACCCGCACTTGCTTGAGAGGAATGGGGAGGGTCTCTCTGCTTCCCGTCTGTCCCTCCTTAGACGTACCTACTCCACCTCCACTCCCCCCAGCTCGCGCCGTCCCTCCAGAGAGTCCCGCGGTTCCCGTTCCTCCATCATTCTCAACCTCTTTCTGCCCAGCGTCAACTCCTCCCCTGCCGCCACCCCCAACGGCTCCCCTTCCGCCACCCCTCAAAACACACCCCCTACCGCCCACCGCGCTTCATCATCTCTCCGCTCCCCAGGACCCTCTCAGCAGGGGCCCGAGCTGCTGGTGGCACGGGGAGAGAGAGAGGACATTCCAGAGGTCATGGTGTTCCCGCCTGAAGAGGAGGAGGAGGAACCGCAGTCACGGTCTTTCGCCACTAAGGATGAGAAGGCCTACGCAGTTTTACAGTGCCTCTTTTTGGATATTGGGAGATGGTTTTCGATCACTGTGCTGTGTGAAGCTAAAATCCTTACACAGAAGCCAGGAATAGTTTGTTATACCTCAGTTAATGGTTTAGCCTTAATGCTCTCCTCAAATGAACTCTTCCTGCCATTCCATAAAAAAGGTCTCCTTGCATCCCCCCAGTCGGCCCCGGGAAGCCTGGAGAACAGCAAGCACAGTGAAAGCCGTATGAATGGCGCTGGTGGCAGCCGGGAAAACAGCACTGTGGACTTTAGCAAGGAGAGCCAATCCCCTTTTCACTGTAGTTGCAGCTCTCTGGGAAGGGGCAGCAAAAGGCCTACAGTGGACATGAATTTCATGAAGAAAATTCCTCCAGGCGCTGAGGCTTCAAATGTTTTGGTGGGGGAAGTTGATTTCCTTGAGCGTCCAATCATTGCCTTCATCCGTCTCTCACCTGCTGTTCTTCTCACTGGACTGACCGAAGTTCCCGTTCCAACAAGGTTTCTCTTCTTGCTGCTGGGGCCTTTCGGTAAAGGGGGCCAATACCACGAGATTGGCAGGTCTATAGCTACTTTAATGACAGATGAGATCTTTCATGATGTAGCGTACAAAGCCAAAGACAGGAATGACCTTCTGTCCGGCATAGATGAGTTCTTGGACCAGGTGACAGTGCTGCCTCCAGGAGAATGGGACCCCACGATACGAATCGAGCCTCCAAAGAGCGTTCCATCTCAGGAGAAGAGGAAGATGCCTTCCATGCCTAATGGCTCTGCTCCACTATCAGAGATTATCAATGAAGAGGAACACCACACGGGACCTGAACTCAAGAGGACAGGACGGATATTCGGGGGTCTGGTGCTAGATGTGAAGCGGAAAGCTCCGTTTTACTGGAGCGATGTGAAGGACGCTTTCAGCCTGCAGTGTTTAGCTTCTATTCTTTTCCTCTATTGCGCCTGCATGTCCCCCGTCATCACCTTCGGAGGCCTTCTGGGGGAAGCCACCAAAAACAACATAAGTGCCATTGAGTCTCTGTTTGGAGCTTCACTGACCGGTGTGGCCTTCTCTCTGTTTGCTGGTCAGCCTCTCACTATCCTGGGCAGCACTGGGCCAGTTCTAGTTTTTGAGAAAATTCTTTTTAAGTTCTGCAGTGAATACGGTCTGTCCTACCTCCCTCTGCGCACTAGCATTGGCCTTTGGACAGCCTTCTTGTGCCTTGTGCTGGTTGCCACAGATGCCAGCTCTCTGGTGTGCTATATAACGAGATTCACAGAGGAAGCCTTCGCTGCTCTCATCTGCATCATTTTTATCTATGAGGCCTTGGAGAAACTCTTCCAACTGGGGGAGATGTACCCTTTCAACATGCATGACAATTTGGACAACCTCACATTTTACACATGTCAGTGTTCACCTCCAGCCAATACCACAGATGAGATGGTACAGTCATGGAATCAGTCAGGGTTTACTCCAGAGACCATTGACTGGAGTGAGCTTAATGTGAAAGATTGCAGGATACTCCATGGCGAGTTTGTGGGTCCTGCTTGTGGACATAATGGCCCGTACATCCCTGATGTATTGTTCTGGTCTGTCATTCTCTTCTTCACCACTTTCTTCCTGTCATCCTTCCTCAAGCAGTTCAAGACCAAGCGATATTTCCCCACTAAGGTCCGCTCTTCCATCAGTGACTTTGCAGTTTTTCTAACCATCATGATTATGGTCTTGGTTGATTACTTGGTGGGCGTCCCCTCTCCTAAACTACATGTCCCAGATACCTTTGAGCCAACTTCTAAGAATCGAGGCTGGCTGATCTCACCTCTGGGTGATAACCCCACATGGACGTTGATCGCAGCAGCCATCCCTGCCCTGCTGTGCACCATCCTCATCTTCATGGATCAGCAGATCACCGCTGTCATCATCAACCGTAAAGAACACAAGCTCAAGAAAGGCTGTGGGTATCATCTTGACCTTTTGGTGGTGGCTGTGATGCTCGGAGTGTGTTCTGTGATGGGCTTGCCCTGGTTCGTCGCTGCCACTGTCCTCTCCATCTCTCACGTCAACAGCCTGAAGGTGGAGTCGGAGTGTTCAGCCCCGGGAGAGCAGCCAAAGTTCCTGGGTATCCGTGAGCAGAGGGTTACCGGGTTCATGATCTTTGTGCTTATGGGTCTCTCTGTCTTTATGACATCTATTCTAAAGTTTATACCAATGCCCGTGTTGTATGGAGTGTTCCTCTACATGGGTGTGTCCTCACTCAGAGGCATACAGTTCTTTGACCGTATTAAACTGTTTGGGATGCCTGCAAAGCACCAGCCTGACCTGATCTACCTGAGATACGTGCCGCTGTGGAAGGTTCATATATTCACAATAGTTCAGCTCACCTGCCTGGTGCTGCTTTGGGTCATCAAAGCGTCTGCTGCTGCGGTGGTCTTCCCTATGATGGTTCTTGCTCTGGTATTTGTGCGGAAGCTTCTAGATTTCTGCTTTACGAAGAGGGAGCTTAGCTGGTTGGATGACCTAATGCCAGAAAGCAAGAAGAAAAAGGAAGATGACAAAAAGAAAAAAGCAAAAGAGGAAGCACAGCGCATGATGGAGGCAGGAGGAGGAATAGAGATCCCTTATGATGGTGATCACCTGGAAATCCCTGTGAAGACCCTTAAAGTCAGGTTGGTGACAGTTCATAAATCACACACTTAAAAATATCACGAATCTCTTGTATACTGCAGCAAAGGCATTTCTTTGTGTGGGTTTCTTTTAAAAACCTGTGTTGGCCTCATTCAACGGCTCATTCAATAAGTTTTGACCCGTTTCTTTTGAGACAGATCTGACAGTGTAGCCTCCGGCACCTCATACGAGGAAGACACGAGCGGAGTGGTTGGTCTTTTGTCTACACACAGACCTGCTTGTGTTCTGGTTCCTGCATAATCCCTCTTTATAGGGGCAAATTCCAATCTGTGTTTTTGTGCCCTTAAAGTATCATGTTATTTGGGGTCTCTGCGGACATGAAAAAACAACATAATTATATACATAAACAACAGTAAACAGTAAAACAGTATTTTTAAAA

Function


symbol description
slc4a7 Predicted to enable inorganic anion exchanger activity. Predicted to act upstream of or within anion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SLC4A7 (solute carrier family 4 member 7).

GO:

id name namespace
GO:0015701 bicarbonate transport biological_process

KEGG:

id description
K13858 SLC4A7, NBC3; solute carrier family 4 (sodium bicarbonate cotransporter), member 7

RNA


RNA id representative length rna type GC content exon number start site end site
CI01000027_03335011_03357910.mRNA True 4104 mRNA 0.50 24 3335011 3358277
Loading

Neighbor


gene id symbol gene type direction distance location
CI01000027_03278134_03279807 ANKRD34A coding upstream 53989 3278134 ~ 3281022 (+)
CI01000027_03243374_03247133 TXNIP, TXNIPB coding upstream 87841 3243154 ~ 3247170 (+)
CI01000027_03233523_03240000 HFE2 coding upstream 95009 3233523 ~ 3240002 (+)
CI01000027_03212432_03231800 THBS3, THBS3A coding upstream 103149 3212432 ~ 3231862 (+)
CI01000027_03202787_03208051 MTX1A coding upstream 126710 3202787 ~ 3208301 (+)
CI01000027_03421902_03436988 NA coding downstream 63551 3421828 ~ 3437216 (+)
CI01000027_03470743_03477848 TBX20 coding downstream 112343 3470620 ~ 3479641 (+)
CI01000027_03524553_03546701 SMARCC1, SMARCC1A coding downstream 165330 3523607 ~ 3546701 (+)
CI01000027_03570192_03600805 CSPG5A coding downstream 211915 3570192 ~ 3600805 (+)
CI01000027_03610825_03621755 PPOX coding downstream 252466 3610743 ~ 3621892 (+)
G138904 NA non-coding upstream 14480 3319283 ~ 3320531 (+)
G138884 NA non-coding upstream 20179 3309830 ~ 3314832 (+)
G138892 NA non-coding upstream 79804 3254930 ~ 3255207 (+)
G138888 NA non-coding upstream 86305 3248478 ~ 3248706 (+)
G138859 NA non-coding upstream 143073 3191620 ~ 3191938 (+)
G138925 NA non-coding downstream 59407 3417684 ~ 3417948 (+)
G138926 NA non-coding downstream 60146 3418423 ~ 3418690 (+)
G138934 NA non-coding downstream 75570 3433847 ~ 3434057 (+)
G138959 NA non-coding downstream 89702 3447979 ~ 3503193 (+)
G138915 NA non-coding downstream 126110 3484387 ~ 3486647 (+)
G138515 NA other upstream 1658151 1664408 ~ 1676860 (+)
G138436 NA other upstream 1827195 1506961 ~ 1507816 (+)
G138290 NA other upstream 2335830 995970 ~ 999181 (+)
G138247 NA other upstream 2465436 855388 ~ 893121 (+)
G138238 NA other upstream 2503328 829774 ~ 831683 (+)
G138953 NA other downstream 143795 3502072 ~ 3520065 (+)
G140436 NA other downstream 1379121 4737398 ~ 4774262 (+)
G140440 NA other downstream 1422140 4780417 ~ 4785660 (+)
CI01000027_05050310_05055447 NA other downstream 1690646 5050310 ~ 5055755 (+)

Expression


CI01000027_03335011_03357910(SLC4A7) Expression in PRJCA010000

Bar chart with 27 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 10.
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CI01000027_03335011_03357910(SLC4A7) Expression in each Bioproject

Bar chart with 44 bars.
CI01000027_03335011_03357910(SLC4A7) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 400.
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Co-expression Network


Homologous


species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010968 slc4a7 coding NC_007127.7 CM002900.2 42693247 ~ 42770064 (-)
bowfin (Amia calva) AMCG00008915 LOC106583168 coding CM030126.1 CM030126.1 14570452 ~ 14587950 (-)