CI01000027_03470743_03477848 (TBX20)


Basic Information

Item Value
gene id CI01000027_03470743_03477848
gene name TBX20
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 3470620 ~ 3479641 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_03470743_03477848.mRNA
CTTTAAAAAAAAAAACATGTTTACTCACGTAAATGCCACTCACTTTTGCTTCAACAGACGAATGTTTCCGACAATTCGCGTGTCATTTTCCGGAGTGGATCCGGATGCCAAATATATCGTACTATGGACATCGTTCCGGTGGACAATAAAAGATATCGATACGCCTACCACAGATCCTCATGGCTTGTGGCGGGAAAGGCAGATCCACCTTTACCTGCCAGGTTGTACGTGCATCCAGATTCGCCGTTTACAGGAGAACAGCTATTGAAACAAATGGTTTCCTTCGAAAAAGTGAAACTTACAAACAACGAACTGGACCAACACGGACATATCATCCTGAACTCAATGCACAAGTACCAACCCCGGGTTCATATCATCAAGAAGAAAGATCACACAGCGTCACTTCTTAACCTAAAGTCTGAGGAGTTTCGTACATTCGTCTTCACTGAGACCGTTTTCACTGCAGTCACTGCTTACCAGAACCAGCTGATAACCAAACTGAAGATTGACAGCAACCCTTTTGCCAAAGGCTTCAGAGACTCCTCCAGACTCACAGATATTGAGAGGGAAAGTGTTGAGAGCTTGATCCACAAGCACTCTTACGCGCGGTCGCCCATTCGGACTTACGCTGGTGATGAGGAGACCTTGGGTGAAGATGGGCACTCGGCACACAGTAGAAGTTCAGCGTTTACTGCATCGGACAACCTCTCTCTCAGCTCCTGGGTCACGACCACATCTGGTTTCTCGGGCTTTCAGCACCCTCAGTCTCTGTCTGCCATCGGAACCAGCACAGCGTCCCTGGCCAGTCCTCTTCCTCACCCCATCCAGGGCTCTCTACCCCCTTACAGTCGCCTGGGCATGCCTCTCACCCCGTCCGCCCTGGCCGGCTCCATGCAGGGCAGCGGGCCTACCTTCCCCTCCTTCCACATGCCACGCTACCACCACTATTTCCAGCAAGGGCCCTACGCCGCCATCCAGGGACTGCGGCATTCTTCCACAGTCATGACCCCGTTCGTATGATTCCTGCCACTTCAGCCTGATAAGATTTCCCTATCGCCGGCATGCGACGACACACGCAAAACACACGCTTACACGAACGGAAGAACCACATGTAAATAACATTGACTAAACATTGACGATCCGAGCGTGCTGCTTCTCGCAGTTGTGCTGGAGAAAAAGTGAATGAATGAGCCCAACGGACACGGATTCTCATAACTTCGAGGATGAGTTTTTAGCGTGGATAAGAGACTCGGAGATCTTTCTGACATGTTTATGCTACCTGTAACGATTCATCTCACGCCTTTATTGCCGCTCAGAGCCAAATGAGGGAGAACGTAACTCGCTGAATGTTACACTGGACAACTGCTGTTTCTCATTGCCCGTGATCCATCACCTCTTAATGATATGATACGATATCTGCCAACCACTCAGCCCTCCTGTTCAAATTGTCGACACTAGAGGGCGCTGTGCTTTCTGAAACAGCAATACTGGATGGAAACATTATATGTGTGGACTCAAAAATGTTGGACAGGTTGGTTTTATCTTTCTGGTCAGATAAGTATCTTCTTTAAAAACTGTTTAAGGCATTTAATTGTATTTCATATTTGAGTTGTTCTCAGCAAGAAAAATTATAAACGAACATTTCTGTTAAGATGAGGGTGAACTGCAACTGATATGAATCAGCGGACACTATGAGGCCATTTTGAGTTGCAACCAAGAAATCCAGAGGAAAATGCACATATTTCTGGTTTGGAACTGGCTAATAGAAGAGCGAACACTCAGAAAACTGATCTATAGCCACTCAAGGCTGCTTGCCGACAGCCAGCTTGCAGGAAGTCTACACCTGTAAATAATGGGCTAATTTTTAAATAATAGGCTCGTCTTCTCCAGGGGAATGAGGGACAGTGGGTAATTTGTGGCTGAAGTGGTCCTATTTGTACAGTCACATCGACGACAATTCATCAGCATCCTGTAACCAAATCACAGAGAAACAGCGCTAGCCGTAATAGCCAGATGAAGAGGAACTGGTGTGTGCGTGTGTGAGGAAGTTAATGATGATGGCACTGTCTTTTATTTATCCTTCAAATTTGACCAAATCAGGACAGATGAGCATAAATACACAACCATCCAAAAAGAGCCACACAATGCAAATAATGAGTCAAATTTATGTGCATTTTAAGGTTCAGGGTGTTTTATTCAGATACAATGTGATGTCAAAGCTGATAAAAACATGTGCCCACCATTTTCAAGCCTTTGATTTGTTATGAACAGACTGTACAAACAGTTATGTAGTTGCAATATATTAGCAAATGTTTTCCTTTTTTGTTTGTTTGTGTGTATTTTTAAGTCAGATGTATCCTACTCATAAGGAGCCATCTGACAATTTTTGTTTTGATGCCTTTTTTTAAGTGCAATATATTTATTTCAGCTATGAAAAAGATATGGCTAATGTAATATTTGAAGCAATGATAGATGTTATTTGTAAACAAAAAGAAATATACTATATCACCCCAAAAATAATGTTGTGAGAGTGTGATTTTTACATTTGCATTTTTGATATATGCTGCCTTCACAATCATTGTGTTAAGTAATTATAATATATACAATACCATATTGAAATTAATCTACATTTTAGGTTTACACTATGAAATTTGTATAGAATTGATATATAGTACATTTAAAAAAAACAGGGAGGGAAAAAAATTTGACCAGTGCGCCTGCATCTATAATAATTTAAAATGACATCTTATTGATTTATTTTTTTTATATGATTGAAATTTGAGGAACATTAATTTTAGGTATCAATTTATATA

Function

symbol description
tbx20 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within several processes, including circulatory system development; cloaca development; and regulation of cardiac muscle cell proliferation. Predicted to be located in nucleus. Is expressed in several structures, including cardiovascular system; digestive system; integument; mesoderm; and nervous system. Human ortholog(s) of this gene implicated in atrial heart septal defect 4. Orthologous to human TBX20 (T-box transcription factor 20).

NR:

description
T-box transcription factor

GO: NA

KEGG:

id description
K10185 TBX20; T-box protein 20

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_03470743_03477848.mRNA True 2813 mRNA 0.42 6 3470620 3479641

Neighbor

gene id symbol gene type direction distance location
CI01000027_03421902_03436988 NA coding upstream 33404 3421828 ~ 3437216 (+)
CI01000027_03335011_03357910 SLC4A7 coding upstream 112343 3335011 ~ 3358277 (+)
CI01000027_03278134_03279807 ANKRD34A coding upstream 189598 3278134 ~ 3281022 (+)
CI01000027_03243374_03247133 TXNIP, TXNIPB coding upstream 223450 3243154 ~ 3247170 (+)
CI01000027_03233523_03240000 HFE2 coding upstream 230618 3233523 ~ 3240002 (+)
CI01000027_03524553_03546701 SMARCC1, SMARCC1A coding downstream 43966 3523607 ~ 3546701 (+)
CI01000027_03570192_03600805 CSPG5A coding downstream 90551 3570192 ~ 3600805 (+)
CI01000027_03610825_03621755 PPOX coding downstream 131102 3610743 ~ 3621892 (+)
CI01000027_03660816_03671233 KCNJ9, KCNJ6, KCNJ5 coding downstream 181175 3660816 ~ 3671515 (+)
CI01000027_03675758_03678539 FBL coding downstream 196117 3675758 ~ 3678649 (+)
G138934 NA non-coding upstream 36563 3433847 ~ 3434057 (+)
G138926 NA non-coding upstream 51930 3418423 ~ 3418690 (+)
G138925 NA non-coding upstream 52672 3417684 ~ 3417948 (+)
G138904 NA non-coding upstream 150089 3319283 ~ 3320531 (+)
G138884 NA non-coding upstream 155788 3309830 ~ 3314832 (+)
G138915 NA non-coding downstream 4746 3484387 ~ 3486647 (+)
G138918 NA non-coding downstream 12791 3492432 ~ 3497919 (+)
G138954 NA non-coding downstream 27881 3507522 ~ 3514673 (+)
G138985 NA non-coding downstream 145672 3625313 ~ 3625608 (+)
G138515 NA other upstream 1793760 1664408 ~ 1676860 (+)
G138436 NA other upstream 1962804 1506961 ~ 1507816 (+)
G138290 NA other upstream 2471439 995970 ~ 999181 (+)
G138247 NA other upstream 2601045 855388 ~ 893121 (+)
G138238 NA other upstream 2638937 829774 ~ 831683 (+)
G138953 NA other downstream 22431 3502072 ~ 3520065 (+)
G140436 NA other downstream 1257757 4737398 ~ 4774262 (+)
G140440 NA other downstream 1300776 4780417 ~ 4785660 (+)
CI01000027_05050310_05055447 NA other downstream 1569282 5050310 ~ 5055755 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010967 tbx20 coding NC_007127.7 CM002900.2 42509011 ~ 42523744 (-)
bowfin (Amia calva) AMCG00002469 tbx20,LOC107719124,LOC107686728,LOC107600539,LOC107737833 coding CM030136.1 CM030136.1 15922805 ~ 15934434 (+)