CI01000027_03787377_03788902


Basic Information

Item Value
gene id CI01000027_03787377_03788902
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 3787377 ~ 3790279 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_03787377_03788902.mRNA
AAACTAGGTACCGCACCAGTATTAATTAGAATACATTCTAAGTGAATTTTTGATATCTGAACCACAGACCTCCATATAATTCAATGTAATTTGTTAGCAACATTCTAAAAAATGCTTGGTTAAATATGGACAAACACAGCGATTGGGTTGTTTTCACCCAGTGATTTTTTTTTCCAAACAATTTTGGGTTCATTTTAAGCAAGCCATATAGTAATTTTTTATCAATAGTTGAGTTAAATAAACTGCTTCACAAACGAGGGTCATGGATTTGCACAAAACATTAACATGATGGCACAAGCTAGTCGATGAGAATCAACTCCACAGCAGCTACATAAATTTATCAACTAACCATTCAGAAACGTCCAGTTGCACTTCTTCCTGAGTCTCTCCATCAGTGTCCGACTCTGATTTGCACAATGTAAGGCTGAACACCGTTACTGACGTTCGTCATTTTGGCTGCGTGACATTCTCCACCTTTGTTGTTGTTGAGCAACCCAAGCGCTAGCTGTTAAAGCTCCGCCCTCTTTTGGAAAGCGCGCCGGGAGCGGCAGCTCATTTAAAGGGACACACACGAAAACTGAATGTTTTTGCTCACACCCAACTAGGGGCAAATTTGACAAGCTATAATAAATGATCTGCGTTGTATTTTGCGCTGAAACTTCAGACACATTCTGGGGACATCAGAGACTTATATTACATCGAATATTACAATTATATTAAATCTAATATTACATATTTAACCGAACCGCTGGGTTTGTCCATATTTAACCCAACGTGGGTTGTTTTTAACCCAGCATTTTTTTTTTTTTAGAGTGAATAACAATCAAACAGTTATATGTCACTGTTGGGATAGTGACTAGTAGCAAGGCTACTAATGAAACTGAATATTTAGCCTAATATTGGATTGTTTGTTATTAGTATTAAAAGTCAAGTAGAAACATAAAATAGAAAAAATTAGTTTAAGGGACTAAATGTTAAAACGGCATGCCACGTGATTATTGGGGGATCGTATAGCAGCTGGACACCGCTCGTCCGAATCTCACTTCTCAAATTCCGTGTTGAGTTGATAGCACAACGATTCACACGGTCTATACTTAGCTCTCCTAAACGTCAAAGTCTGCAGCAAGACACGATCTGTGTTTTAGTGTGACGTGATATTTTAAAACTTTAAACGCTTTTCTTGAAATCATTTGAAGGCTGAAGGATTATATTTGTTTTAGGATGTTTTAGGATAATCAGCTGAAGAGTTTAGCCTGTTGAGCCCAGTAATGTTTAAGAAACTGTGATAATAAAGAAGAAAAGAGAAACGTGGGACAAACTATTCCAAGGAAGCGATTTATGAATGCATCGGTTTATACAGCTGTGTGAACTGTGAACATGTCACTAGGAATGATTTCATTTTTGGCTCTCTTCGTCTTTTTTATTCAAGTGCCGCAGGGCCAAACTGGATGTGCTGAAGTGGATTCCATGACAGAGGCGGTGGCTGGAGAAAACTTTCTGTTAGGTTGCATTTCCTGCAAAAGAAGAGAAGAAGTGCCAGGTTCTGCTATTGTGGACTGGCACTTCAAACCAGCTGGAACTGAGGAGTTTATACACATTTTCCAGTATGAATATCCTTTCCCCACTATTCTTCATGAAAACTATGAGGGAAGATTAGAGTGGCAAGGGACTATGGGGACAAAGGATGTGCAAATTGGTGCCATCTTCATTCATAATGTCACATATAACGACACTGGGACTTACCTCTGTACCTTCCACCGCACGCTATACCTTTTGCTGGATGAGGAGCATGTGATAATAAACAAGGAGGTGGAACTCACAGTTGTGGAAAAAGCCAACCCCGAGCTGACGGCTGTAATCTCAGAGATCATCATGTACGTGTTGATCGTAGTCCTGCAGTTGTGGATGATTGGAGTGCTGATTTACTGCTATAGGAAGATCTACGCAGAGAACGAAGCTCGAGAGGCCAGAAAAGCTACACGCTCTCAAAACAA
>TU159398
GTTGAGTTGATAGCACAACGATTCACACGGTCTATACTTAGCTCTCCTAAACGTCAAAGTCTGCAGCAAGACACGATCTGTGTTTTAGTGTGACGTGATATTTTAAAACTTTAAACGCTTTTCTTGAAATCATTTGAAGGCTGAAGGATTATATTTGTTTTAGGATGTTTTAGGATAATCAGCTGAAGAGTTTAGCCTGTTGAGCCCAGTAATGTTTAAGAAACTGTGATAATAAAGAAGAAAAGAGAAACGTGGGACAAACTATTCCAAGGAAGCGATTTATGAATGCATCGGTTTATACAGCTGTGTGAACTGTGAACATGTCACTAGGAATGATTTCATTTTTGGCTCTCTTCGTCTTTTTTATTCAAGTGCCGCAGGGCCAAACTGGATGTGCTGAAGTGGATTCCATGACAGAGGCGGTGGCTGGAGAAAACTTTCTGTTAGGTTGCATTTCCTGCAAAAGAAGAGAAGAAGTGCCAGGTTCTGCTATTGTGGACTGGCACTTCAAACCAGCTGGAACTGAGGAGTTTATACACATTTTCCAGTATGAATATCCTTTCCCCACTATTCTTCATGAAAACTATGAGGGAAGATTAGAGTGGCAAGGGACTATGGGGACAAAGGATGTGCAAATTGGTGCCATCTTCATTCATAATGTCACATATAACGACACTGGGACTTACCTCTGTACCTTCCACCGCACGCTATACCTTTTGCTGGATGAGGAGCATGTGATAATAAACAAGGAGGTGGAACTCACAGTTGTGGAAAAAGCCAACCCCGAGCTGACGGCTGTAATCTCAGAGATCATCATGTACGTGTTGATCGTAGTCCTGCAGTTGTGGATGATTGGAGTGCTGATTTACTGCTATAGGAAGATCTACGCAGAGAACGAAGCTCGAGAGGCCAGAAAAGCTACACGCTCTCAAAACA

Function

NR:

description
Sodium channel beta-1 subunit precursor

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_03787377_03788902.mRNA False 1994 mRNA 0.40 4 3787377 3790279
TU159398 True 936 TUCP 0.42 4 3787378 3789222

Neighbor

gene id symbol gene type direction distance location
CI01000027_03750919_03761043 FLI1, FLI1B coding downstream 26314 3750830 ~ 3761063 (-)
CI01000027_03694455_03710634 NA coding downstream 76338 3694227 ~ 3711039 (-)
CI01000027_03689861_03690969 NA coding downstream 96166 3689439 ~ 3691211 (-)
CI01000027_03513546_03521352 NA coding downstream 266025 3512392 ~ 3521352 (-)
CI01000027_03501726_03510058 NA coding downstream 277319 3501120 ~ 3510058 (-)
CI01000027_03832200_03836030 NA coding upstream 40926 3831205 ~ 3836530 (-)
CI01000027_03898513_03905519 NA coding upstream 106987 3897266 ~ 3906494 (-)
CI01000027_03922380_03931033 NA coding upstream 131963 3922242 ~ 3931033 (-)
CI01000027_03969492_03973741 NA coding upstream 178419 3968698 ~ 3974176 (-)
CI01000027_04008272_04011121 NA coding upstream 217901 4008180 ~ 4012622 (-)
G140221 NA non-coding downstream 12297 3774856 ~ 3775080 (-)
G140220 NA non-coding downstream 12827 3773514 ~ 3774550 (-)
G140167 NA non-coding downstream 37338 3746879 ~ 3750039 (-)
G140218 NA non-coding downstream 43983 3743148 ~ 3743394 (-)
G140217 NA non-coding downstream 45366 3741247 ~ 3742011 (-)
G140262 NA non-coding upstream 12436 3802715 ~ 3805429 (-)
G140237 NA non-coding upstream 33625 3823904 ~ 3824438 (-)
G140267 NA non-coding upstream 59081 3849360 ~ 3849642 (-)
G140268 NA non-coding upstream 79188 3869467 ~ 3869871 (-)
G140308 NA non-coding upstream 208409 3998688 ~ 4036880 (-)
G140118 NA other downstream 202698 3509352 ~ 3584679 (-)
CI01000027_02226447_02227499 NA other downstream 1559352 2225781 ~ 2227499 (-)
CI01000027_02119227_02124423 NA other downstream 1661349 2119131 ~ 2125142 (-)
CI01000027_01303308_01319462 NR2F5, NR2F1, NR2F1.L, NR2F2 other downstream 2467216 1302034 ~ 1321178 (-)
CI01000027_01241417_01245177 NA other downstream 2540400 1240478 ~ 1246267 (-)
G141481 NA other upstream 581968 4372247 ~ 4412810 (-)
G141488 NA other upstream 717196 4507475 ~ 4508971 (-)
G141728 NA other upstream 1086788 4877067 ~ 4877766 (-)
G141588 NA other upstream 1318056 5108335 ~ 5201155 (-)

Expression


Co-expression Network