CI01000027_03998691_04000730 (RPP25L)


Basic Information

Item Value
gene id CI01000027_03998691_04000730
gene name RPP25L
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 3998168 ~ 4000834 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_03998691_04000730.mRNA
GTTTAAAAAAAGGCTGTGGAAGCTAAGCTGCCACAGTTCAGTCATATGAAACGACATAAGCCCGCAATTATTTAGAAAAAACAGCTGCAGCTATCTGAACTTGCTAGCCAGATCGCTACTTGCTAGCACAAGAAACGAAAGTAAGTTTATTAAAATATTTTTTCATGTGCCACTCTGAATAATGATGCTGTTTTCGATAACATATAATCCCGAGCTGTCATTTATTAAAATCATCCTCGTTTTGAGGACTCTGCCGCAAAAATATGGTAATTTATTCATTTTAATTTGGAAAATTATTTTTCATTCTAAGTGGATATAGGGGTCTTTGAAACTAACGTCATTGGTACAGAAAATGCACTTTTACATTTGTGCATATAGTTACTAATATAGATGTATGTGGGTAATTTTTGGGGAATTTTTTGGGTTGAAACTACATATACATATGAACCACAATACATTACTAGCAGAACTGATATACAGTAATTCATTCCTTTTTAATTTTCACAGGTGAAGGCTAAACATCATGGAGAACTACAGAAAAGCACGCACAGTTGAGCAGCCCTGCCCGTGTCCGTTCCCCAACCTGCCCAGCAACACTCCTGAAGTTCGAGTGAAGGATGGCAGCAAAGTCCGCAACCTGATGAGGTTTGCTTTAAGCCGTATGGAGGAGAAAGCACCTTCAGCAGATAATCCAGGCACCAATGAAGGGTCAGAGGTGAGCGTTGGGTCGGGGGAGAATCTGAGCCGCCAAATCGTGTTCACAGGTGTGGGTCAGAGCGTAGCTAAAGCCATCACGTGCGTGGAGATCCTGAAACGTCGTGTTCACGGACTACATCAGCATACCAAGCTGGCCTACCGCACAGTTCAGGAGGTCTGGGAGCCCCTGGAGCCTGAGGCTGGGTTGGACAGTCTCACAGTCAGCAGAAATGTACCTAGTGTATGGGTTCTGCTCTCCAAAGACTCACTTGATAGTAACCAGCCGGGCTACCAAGCGCCAGGTTCATTTGATGCCTTTTGGGCTCAGGCTCTCAAAGAGGAAGCGGCAACCCTGAGACATGAACAGAGAAGAAAGAGGGGAGGAACAGGGACTGGAAGGGCAGAAGGGGCTGGCAGAGGAAAGGGTCCACGCAAGCAACTGGGCCGACCTGGAGGAACACGTAAACCTTTAGGTCATGCAGGGGGTGGAAATTTCTATTTTGTGGAATCCAGAAAAGAAAAGTTCAAACAGTAGAATTGAAAGTTGTGATGTGTGGATACAAATAATGGTCAGCTCTGTGGCAGATAAAAATGTAACATGGAAAATGTACTGTTTTGGAACTGAATTATTTTGAGTGA

Function

symbol description
rpp25l Predicted to enable RNA binding activity. Predicted to be involved in tRNA 5'-leader removal. Predicted to be part of ribonuclease MRP complex. Orthologous to human RPP25L (ribonuclease P/MRP subunit p25 like).

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG:

id description
K14525 RPP25; ribonucleases P/MRP protein subunit RPP25

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_03998691_04000730.mRNA True 1335 mRNA 0.44 2 3998168 4000834

Neighbor

gene id symbol gene type direction distance location
CI01000027_03976548_03994948 NA coding upstream 3140 3975433 ~ 3995028 (+)
CI01000027_03941809_03967258 ATP2C1 coding upstream 30910 3941809 ~ 3967258 (+)
CI01000027_03907257_03920389 CEP85 coding upstream 77180 3907257 ~ 3920988 (+)
CI01000027_03879680_03890591 NA coding upstream 106431 3879274 ~ 3891737 (+)
CI01000027_03863467_03864594 PSMC4 coding upstream 133291 3862496 ~ 3864877 (+)
CI01000027_04012798_04014351 NA coding downstream 11913 4012747 ~ 4014351 (+)
CI01000027_04015806_04037491 NA coding downstream 14896 4015730 ~ 4038774 (+)
CI01000027_04054186_04103227 NA coding downstream 52204 4053038 ~ 4104420 (+)
CI01000027_04213570_04229519 PTPN23, PTPN23A coding downstream 211664 4212498 ~ 4229677 (+)
CI01000027_04350540_04357555 SHE coding downstream 349180 4350014 ~ 4358099 (+)
G139023 NA non-coding upstream 132651 3865013 ~ 3865517 (+)
G139027 NA non-coding upstream 157726 3838205 ~ 3840442 (+)
G139016 NA non-coding upstream 173733 3824046 ~ 3824435 (+)
G138958 NA non-coding upstream 210318 3787355 ~ 3787850 (+)
G139002 NA non-coding upstream 253930 3744009 ~ 3744238 (+)
G140381 NA non-coding downstream 132004 4132838 ~ 4133069 (+)
G140384 NA non-coding downstream 139105 4139939 ~ 4140428 (+)
G140386 NA non-coding downstream 145654 4146488 ~ 4146794 (+)
G140391 NA non-coding downstream 167575 4168409 ~ 4168635 (+)
G140392 NA non-coding downstream 169229 4170063 ~ 4174661 (+)
G138953 NA other upstream 478103 3502072 ~ 3520065 (+)
G138915 NA other upstream 511521 3484387 ~ 3486647 (+)
G138515 NA other upstream 2321308 1664408 ~ 1676860 (+)
G138436 NA other upstream 2490352 1506961 ~ 1507816 (+)
G138290 NA other upstream 2998987 995970 ~ 999181 (+)
G140436 NA other downstream 736564 4737398 ~ 4774262 (+)
G140440 NA other downstream 779583 4780417 ~ 4785660 (+)
CI01000027_05050310_05055447 NA other downstream 1048089 5050310 ~ 5055755 (+)
CI01000027_05069310_05070638 NA other downstream 1068518 5067917 ~ 5070868 (+)
CI01000027_05071693_05072917 NA other downstream 1071228 5071693 ~ 5073136 (+)

Expression


Co-expression Network