CI01000027_04887494_04956477 (KCNN3)


Basic Information

Item Value
gene id CI01000027_04887494_04956477
gene name KCNN3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 4887316 ~ 4957488 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_04887494_04956477.mRNA
TTATTAATATAAGGGGAGTCCCCCATTTAATCCAGCCTCCTTTTGCACCTGCTAATTTTATTCGGTTATAAATAACGTAATGATCCGTTCTTCACTCTCTCTCTTCCTTTCTCTCCCTCCAACTAAACTCCAGAGTTGAGGAGCAGAGCACAAACAAACCTGCTGGAGCCTGGTTGCCATGGATCCCCCTCCCTCTCTGAGTCTGGCCCTTCTCAGCGGGAGCGAAGACGAAGAGCAACGTCTGCCCCTCCCTCTCGGTGGTATCTCCCATGCTTCCCTTTCTGGCAACTACCCTGGGACCAACCACTCAAATCATACGGGAGGCAACAGCAGCCTGGAGCGTCTTAATGGCACCCCTTCTCCCACCACGCCGAACCTTCCCCCGGCATCGCTGCCCAAGTTGCCCCTGTCCACGACGCCTCAGCTGTCCACGCCAATCCCCAACGCGCTCCACCCCACTAGCACGCCGCTCTCCTCCTGCTTGGGTAGCCAACACAGCCTGAGCGGGGAGACGTCGCCTGTCTACAATGCGCTATTCTATTCCTCACATTCACCTTCCACTGAGCGAGATCGGGAGCGGGAGAGGGAGCGAGAGAGGGGATGTAAGCACAGGCAGGCCAGTCCCCTGGTGCACAGGCGGGACAGTAACCCCTTTACAGAGATCGCCATGAGTTCGTGCAAGTACAGCGGTGGCGTGATGAAGCCGCTCAGCCGCCTCAGTGCCTCCCGTCGGAACCTCATCGAGTCCGACAGTGGAAGCGACACCAAAGAGGGCCAGGCGAGTGCGGGCCAGGTGACCACGGCCTCCTCTCAGCACAGTCAATCCCAATCTCAGAACCCCCCAGAGATCGTTATCTCCTCGAAAGAGGATCCGCCTTACGGACACGCTTACGAACTAGAGGCCTCGGCCAATCAAATGTCCATCTACCACCAGAACCACGCCCTCTCCGAGAGCAGGGGCATGCTGGGTGGAGCGGCAGGGGGCGGGACTAATGGAAGGAGGGGCGGTGCTGTGGGAGGGCCAGGGAGGACCGCTTCTAAAGCCCCTAAACGTAAGAATCAGAACATTGGCTACAAACTAGGCCACAGGAGGGCACTGTTCGAAAAGAGGAAGAGACTTAGTGACTATGCGCTCATATTCGGCATGTTTGGCATTGTTGTCATGGTGATTGAGACCGAGCTGTCCTGGGGTGTCTACAATAAGAGCTCCATGTATTCTCTGGCGTTGAAGTGTCTTATCAGCCTTTCCACCGTCATCCTTCTTGGACTAATCATCGCTTACCATGCTCGAGAAGTGCAGCTCTTCGTTATTGACAATGGTGCGGACGACTGGCGGATCGCCATGACCATGGAGCGAGTGCTGCTTATCGCTCTGGAGCTGATCGTTTCGGCGGTTCACCCGGTGCCGGGGGACTTCAAGTTTATGTGGCGGGCGCGGCTGGCCTTCTCCTATGCTCCCTCGCAGGCGGAGGCAGATCTAGACATGGTGCTGTCCGTACCCATGTTCCTTAGACTCTACCTCATCGCCCGAGTCATGCTGCTACATAGCAAGCTCTTCACTGACGCCTCCTCTCGCAGCATAGGGGCACTCAACAAGGTGCACTTTAACACACGGTTTGTGATGAAGACCCTGATGACCATATGCCCAGGCACAGTGCTGCTAGTCTTCAGCATCTCCCTGTGGATCATCGCTGCCTGGACCGTAAGAGTGTGTGAGAGGTACCATGATGCTCAGGATGTGACCAGTAATTTTTTGGGTGCCATGTGGCTCATCTCCATCACCTTCCTCTCCATTGGATATGGAGACATGGTGCCTCACACCTACTGTGGCAAGGGAGTGTGTTTGCTCACAGGAATTATGGGAGCAGGTTGCACTGCATTGGTTGTTGCCGTGGTAGCCAGAAAGCTTGAGCTGACAAAGGCGGAGAAGCATGTGCACAACTTTATGATGGACACACAGCTCACCAAACGGATAAAGAACGCAGCAGCGAATGTTCTACGAGAGACTTGGCTGATATACAAGCACACCAAGCTGATGAAGAAAATTGACCACTCCCGTGTACGCAAGCATCAGAGGAAGTTCCTTCAAGCCATTCACCAATTGCGAAGTGTTAAAATGGAGCAGAGAAAACTCAGTGATCAAGCCAATACTCTGGTGGACTTATCAAAGATGCAGAGCGTCATGTATGAACTGATGTCTGAGCTGAACGACCGCAGTGAGGATCTGGAGAGGCAGATGTTAAGTCTGGAGCAGCGGGTGGAGCAGCTGACGGCCGGCTTTAACGCTCTGCCCGCTCATTTGTCGGCCACGCTCAGCGCCCAGCATACCGCACTCATTCAACTGCTGCGTGAGCGTGATGCCAAGGTCCTGAGCCCCACTGTGCCCTCTGTGCTCTCACCCACCGCTGCCAGCCTGCCTCTAGCCAACCCCCCCTCCGGCTCCGTCCCGGCTCAGCCCACCGAGGACAGTCCCAACACCAGCAGCTCCAGCTGCTGAGAGCACTGGTGCGGGAAGTTCCCTCCAGGGCGGAGAGTTGGATGATTAGTCATAACGAAGAGAAGAGATGACATAACCATATACACGCATATACATACGATGCACTGTAACTACGAGCATTACGCAGCTTAACGCCACAGAATATATCACAATGGAGGAGACGCTAACATTTGCACAAAAACCCTATGAAGAAACTGCCATATTTCATGTAGTCCAAACAAAGGACGTACTTTACTGTTACCATGAATGTATACATTTTAGAAGACACTGACTCAGACATGTTAACATGCATGGACACTCATAAACACACTTTCTCTAATTCCCTCTTTGCTACCAAAGTGCTTTGTCTATAGTTGACTGAAAAGGACTAAGGTGTGTGTTGCAAAACAAGTGATCGGGGTGGCTGGGATTAGAGAGAGTATAAATAATCAGCGCCCGAGAATGTTATGATGGCGAATCATCATAGAGATCTGGACAGCACTTTTTTACAGAGACTAACAGCCATTTGAGCAAAGTATTATTTCGAAGAGCGACGCTGACGCCAGTCGATACATTATAAAAACCACCCGATCAAGGTGGAACAGCTGCTCACACAGAAATAACTGTAGAATGAGTGATTATAGTCATTTTCTTAGTGGAATTGCTTCTATTATAATGGTGTTGGAATAAGAGACTATTTTACTTCTGACCCCATTTCAATGGAGAGACCATTTTGAAAACTGACTAATAGTGACATCCTGTGGCCGGAATACTGAATTACATCCGCTTGGAATATTGTACAGTATGCTATTACTGAAACTTAGCTTTGTATCGCTCAGTTTTTTACCATTAATTATTACTAACGCAGTTATAGCTCATATTTATTATAATTATACGATAGCATTCTTCTCATTCGTCATGGAAATTATGATTGCTGTATAAATAACGATTTTATTAATATTAATTATAGATAAGGGAGGTGCCGTTTGAGGTTGAAATTATTTTGTAATTTTATTTTACCAGAGAGAATTA

Function

symbol description
kcnn3 Predicted to enable calmodulin binding activity and small conductance calcium-activated potassium channel activity. Predicted to be involved in potassium ion transmembrane transport. Predicted to act upstream of or within potassium ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection; neuronal cell body; and plasma membrane. Is expressed in atrium and cardiac ventricle. Human ortholog(s) of this gene implicated in paranoid schizophrenia and schizophrenia. Orthologous to human KCNN3 (potassium calcium-activated channel subfamily N member 3).

GO:

id name namespace
GO:0006813 potassium ion transport biological_process

KEGG:

id description
K04944 KCNN3, KCA2.3; potassium intermediate/small conductance calcium-activated channel subfamily N member 3

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_04887494_04956477.mRNA True 3508 mRNA 0.50 9 4887316 4957488

Neighbor

gene id symbol gene type direction distance location
CI01000027_04860802_04872130 NA coding upstream 14750 4860802 ~ 4872566 (+)
CI01000027_04835989_04851147 SNX27.L, SNX27B, SNX27, SNX27A coding upstream 36138 4835989 ~ 4851178 (+)
CI01000027_04777135_04777760 NA coding upstream 108003 4776487 ~ 4779338 (+)
CI01000027_04774573_04774740 NA coding upstream 112338 4774573 ~ 4775489 (+)
CI01000027_04768212_04770488 KRTCAP2 coding upstream 116629 4768212 ~ 4770687 (+)
CI01000027_04978217_04987503 NA coding downstream 20729 4978217 ~ 4987503 (+)
CI01000027_05018992_05033275 NA coding downstream 60772 5018260 ~ 5034290 (+)
CI01000027_05050310_05055447 NA coding downstream 92822 5050310 ~ 5055755 (+)
CI01000027_05061061_05063086 APOEB coding downstream 102251 5059739 ~ 5063414 (+)
CI01000027_05069310_05070638 NA coding downstream 110429 5067917 ~ 5070868 (+)
G140645 NA non-coding upstream 1498 4885619 ~ 4885818 (+)
G140643 NA non-coding upstream 3406 4883685 ~ 4883910 (+)
G140642 NA non-coding upstream 3706 4883409 ~ 4883610 (+)
G140641 NA non-coding upstream 4421 4882579 ~ 4882895 (+)
G140640 NA non-coding upstream 4950 4882080 ~ 4882366 (+)
G140437 NA non-coding downstream 18239 4975727 ~ 4991547 (+)
G140672 NA non-coding downstream 81057 5038545 ~ 5038798 (+)
G140674 NA non-coding downstream 81753 5039241 ~ 5039487 (+)
G140683 NA non-coding downstream 144903 5102391 ~ 5108232 (+)
G140440 NA other upstream 101656 4780417 ~ 4785660 (+)
G140436 NA other upstream 107978 4737398 ~ 4774262 (+)
G138953 NA other upstream 1367251 3502072 ~ 3520065 (+)
G138915 NA other upstream 1400669 3484387 ~ 3486647 (+)
G138515 NA other upstream 3210456 1664408 ~ 1676860 (+)
CI01000027_05071693_05072917 NA other downstream 114574 5071693 ~ 5073136 (+)
G140862 NA other downstream 755124 5712612 ~ 5712702 (+)
CI01000027_05757143_05758496 NA other downstream 799494 5756982 ~ 5758881 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G74856 kcnn3 unknown NC_053118.1 CM020915.1 22247426 ~ 22250434 (-)
mexican tetra (Astyanax mexicanus) G74294 NA non-coding NC_035904.1 CM008307.1 16745859 ~ 16746395 (+)