CI01000027_04978217_04987503


Basic Information

Item Value
gene id CI01000027_04978217_04987503
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 4978217 ~ 4987503 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_04978217_04987503.mRNA
ATGGTGACAGCTCCAGCATCTCAGTGTGTGAATCTGCGTTTGGTAGATGACGTACAGTGGGCCAGACACTCTGTCACTTTATTCAACCATCCAAAAGTCACAGAAAATCTGACCTTGATCAATGGTTCAGGTTACTTTCATGTCCATCTACAAGACAACCAATTGGCCAGCATTAACCACATGACGAAAACAAATATATTACAGATTGAGGTCAGACATTCTGCTGTAGTGCGAGTGCGTGTTCTGGACTCAAAGAATCAACCATTTCTTCATAATTTCCTGTTGCTCATGAACCTCATACTTATCCCTTCTTCATTCATCATTTCTGTGGAGGAGGCGGGGCCAGTGGACGAGTACAGTGTGGGATTCCATGTGACAGGCCTGGCAGTGGGTGTGGTGAAATGGGAGGGAGGGCCTCATCCTCAGTCCAGCGTCAGGTTCTCTGTGAGTGACAGCTCTATCGCCGTGGTAACAGAGTCAGGACTCGTCAGAGGCATGGCAGTGGGTCTGGTAAAACTCAGAGGAGCTCTCCAGACACAAGATACAGAAGCACCGCTTACCTTTGTACAGGATGAAGTGGAGGTGGAGGTGTTTAATCTGACAGCAGTGAGGATACAGGCTCCTTTAGTTACTCTCTCTGTAGGAACAGAGATGCCGGTTTACGTGATGGGGAGGGACAGCGGTCAGAACCCTCTGTCTCTGGGTGGTGTTGAGTCTGACCTTACGTTCCACTGGAGTCTGCACAAACCGTGTGTGCTGGAGATCAAACCCAGGCATGCACAGGTGGGCGTTAGTGTGTCTCCCTCTCACAGTTTCTCTGTGCTGGTGAGGGCTGAAGCTCCAGGCAGGACCAGCCTCAAAGTGTGTGTGCAGCTCGAACAGATACACGCCAGCAATACTTCACTCTCTGATCATCTCACTGATGAGATACAGATACTGGTGTTTGAAGAGATGCAGTTAACAACAGGAACTCCAGGTTCCATCCTCATGTCTCCCCTTTCTCAGTACACCCTGCAGAGCAATAAAGACTCAGTCTGTCCAGTCCGTTACACCCTTAGCCGGTGTATCTCAGGGGCAGGGCTTGTAACTGTTGACGATCAAGGGGTGTTGAGGACAGGGTCTGATACAGGCGTGGCTCTTTTGGAGGTTTTTGCAATGGACATTTGTGGTATCAACCAAACACTGTTGATCAGTGTGAAGGTGTCAACAGTGTGGTTTGTACGTGTTTTGACTGTGTCCTCCGTGAACAGTGATGGTGAGAGAGCCTTTCCTGCCTTCCCTCTGGGCTGGAGCATCCATATCAAAGTGCTATATTATGACAGCATGGGACAACAATTTCACTCCCATAATATGCAAACACTGGCCACCACTAACAGAGATGACCTGGTGCAACTGATAGTTGACAAAGACAATCATTCGTTTCTGGTTCAGACAGTGTCACCCGGTCTAACTGTTTTGAGGGTGCAGGGAGACCCTATAAACCCATTTCTGAGCGATTACACCCCTCTGTTTGTGGTGCCTGCCATGTCAGAGCCCCCAGGATTATTGCGCCCTGGGGATATCATCTGTTTCAGCTCTCCCATTACAGACCAGCAGGGTAAGCGAGGGAGATGGGATGTGTCATCAAGTCAGATCCTTCAAATGAATTCTGAGACTGGAGTAGCATTTGCAAAGAATTCTGGGACAGTAGTGGTTTACTACAGGCTAGAGGGAGGGCAGCAAACCTTCAGAGAGGTAACAGTGGAGTCTGCGTCCATTCCTGTGATCATTCTTCCTGCTGATAGGCTCCTCACTAACTGGCCTGAAGCTTCAGAATTCACAGTCAGAGTGGATCTTAACACCTCTGCTGCCAACATAGCTCAATGCAGTATAGACCAGTGGGAAGCCATAGACAAGAAACTACATCCTGAGGCAGAGCTATTGTGCTCGTTATACTTTGGCGCCCCCTACCTAGAGATAAGAATACTGCAGGATATCTTTCGCACAACACCCTTCTACAATACAGAAACGGCTCAGTACAGCTGCAAGATCTCTGTTCAGCCCCAGCCAGACTCCATCCTCCATCTTCTGTCCACTCTGCCTCTCTCCATCTATCTGTCTGCCTGTCTGCAGACTCAATCACCCCCAGCTGCCCTACTGTCGCTTCCTAACTCACCCCCTTCTTTTCAACCCTCCGTTCGGCTCCAGTATGTGCCGGCGTTCCATTGTCCTGTCACCAAGATCAAACTGTCCTCCCAGCAGCCTGTGGCTGAAATCACAGTGTTTGGCACCACAGATATGTTCAGTACATTGAGG
>TU159877
CAGTGGAGTCTGCGTCCATTCCTGTGATCATTCTTCCTGCTGATAGGCTCCTCACTAACTGGCCTGAAGCTTCAGAATTCACAGTCAGAGTGGATCTTAACACCTCTGCTGCCAACATAGCTCAATGCAGTATAGACCAGTGGGAAGCCATAGACAAGAAACTACATCCTGAGGCAGAGCTATTGTGCTCGTTATACTTTGGCGCCCCCTACCTAGAGATAAGAATACTGCAGGATATCTTTCGCACAACACCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_04978217_04987503.mRNA False 2295 mRNA 0.49 16 4978217 4987503
TU159877 True 254 lncRNA 0.48 2 4986181 4986923

Neighbor

gene id symbol gene type direction distance location
CI01000027_04887494_04956477 KCNN3 coding upstream 20729 4887316 ~ 4957488 (+)
CI01000027_04860802_04872130 NA coding upstream 105651 4860802 ~ 4872566 (+)
CI01000027_04835989_04851147 SNX27.L, SNX27B, SNX27, SNX27A coding upstream 127039 4835989 ~ 4851178 (+)
CI01000027_04777135_04777760 NA coding upstream 198904 4776487 ~ 4779338 (+)
CI01000027_04774573_04774740 NA coding upstream 203239 4774573 ~ 4775489 (+)
CI01000027_05018992_05033275 NA coding downstream 30757 5018260 ~ 5034290 (+)
CI01000027_05050310_05055447 NA coding downstream 62807 5050310 ~ 5055755 (+)
CI01000027_05061061_05063086 APOEB coding downstream 72236 5059739 ~ 5063414 (+)
CI01000027_05069310_05070638 NA coding downstream 80414 5067917 ~ 5070868 (+)
CI01000027_05071693_05072917 NA coding downstream 84190 5071693 ~ 5073136 (+)
G140645 NA non-coding upstream 92399 4885619 ~ 4885818 (+)
G140643 NA non-coding upstream 94307 4883685 ~ 4883910 (+)
G140642 NA non-coding upstream 94607 4883409 ~ 4883610 (+)
G140641 NA non-coding upstream 95322 4882579 ~ 4882895 (+)
G140640 NA non-coding upstream 95851 4882080 ~ 4882366 (+)
G140672 NA non-coding downstream 51042 5038545 ~ 5038798 (+)
G140674 NA non-coding downstream 51738 5039241 ~ 5039487 (+)
G140683 NA non-coding downstream 114888 5102391 ~ 5108232 (+)
G140685 NA non-coding downstream 122316 5109819 ~ 5114502 (+)
G140684 NA non-coding downstream 130965 5118468 ~ 5164862 (+)
G140440 NA other upstream 192557 4780417 ~ 4785660 (+)
G140436 NA other upstream 198879 4737398 ~ 4774262 (+)
G138953 NA other upstream 1458152 3502072 ~ 3520065 (+)
G138915 NA other upstream 1491570 3484387 ~ 3486647 (+)
G138515 NA other upstream 3301357 1664408 ~ 1676860 (+)
G140862 NA other downstream 725109 5712612 ~ 5712702 (+)
CI01000027_05757143_05758496 NA other downstream 769479 5756982 ~ 5758881 (+)

Expression


Co-expression Network