CI01000027_05050310_05055447


Basic Information

Item Value
gene id CI01000027_05050310_05055447
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 5050310 ~ 5055755 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_05050310_05055447.mRNA
TATGGCAACTTTGTGGATAATATACGGCTGTATGTGAGGGGTGGGAGCGGAGGAATGGGTTTGCCTCGTTTAGGGGGACATGGGGGAAATGGTGGAGATGTGTGGGTGGTGGCCAAAAAAGGCACTACATTGAAGCAAATCAAGGACAAACACCCTAACAAACGATTCACTGCAGGTGTTGGTTCAAACAGCAGTATTCATGCTCTGAGAGGGGCGAAAGGAGAGGACACCCAGGTCTTTGCACCTACTGGGATCAGTGTAACAACGGACGGACATTTTATTCTTTTCACTTTAGGGGAGTTGAACTGTGAAGGAGACAGACTTTTGGTGGCTAGAGGTGGTCATGGTGGCTCTCTTCACTCGGGGTTCTTACCCAGTAAAGGTCAAACCAGACAGATTCGGCTGGACCTTAAACTCATCGCAGATCTTGGACTTGTAGGGTTTCCCAATGCAGGCAAATCCTCCTTGCTGACTGCCTTGTCTCATGCTAAACCAAGGATTGCCAGCTATCCCTTTACAACTTTAAGACCTGAAATCGGAAAGATCATGTATGATGACCACAAACAGGTAGGATGACAGGCTCTTCAAAATGTGTTGAACTCATAACATTCACTCAGGAGGATGTTGTCATGTCACACAACTTATTGTAGTTATAACACTGGCATGCCTGTTCAGAAGACCACATTGTGTGAAGGAGTCTTTGTTTTTAATTTATGGATACAACTAGGTTAATTAGATTTATTCTGTATATTGCTTGTAAAGAGAATTAAACCAAAATTACAATATACAGTTAAACCAAGATTTAAACCAAAAATTACAATATACAGTTACATTTTTGATAAACAGATCTTTAGCAAATATGATTTTATATGTTGTGTCATATA

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_05050310_05055447.mRNA False 884 mRNA 0.41 5 5050310 5055755

Neighbor

gene id symbol gene type direction distance location
CI01000027_05018992_05033275 NA coding upstream 16020 5018260 ~ 5034290 (+)
CI01000027_04978217_04987503 NA coding upstream 62807 4978217 ~ 4987503 (+)
CI01000027_04887494_04956477 KCNN3 coding upstream 92822 4887316 ~ 4957488 (+)
CI01000027_04860802_04872130 NA coding upstream 177744 4860802 ~ 4872566 (+)
CI01000027_04835989_04851147 SNX27.L, SNX27B, SNX27, SNX27A coding upstream 199132 4835989 ~ 4851178 (+)
CI01000027_05061061_05063086 APOEB coding downstream 3984 5059739 ~ 5063414 (+)
CI01000027_05069310_05070638 NA coding downstream 12162 5067917 ~ 5070868 (+)
CI01000027_05071693_05072917 NA coding downstream 15938 5071693 ~ 5073136 (+)
CI01000027_05074328_05075547 NA coding downstream 18573 5074328 ~ 5075740 (+)
CI01000027_05082223_05082843 APOC2 coding downstream 25861 5081616 ~ 5083193 (+)
G140674 NA non-coding upstream 10823 5039241 ~ 5039487 (+)
G140672 NA non-coding upstream 11512 5038545 ~ 5038798 (+)
G140437 NA non-coding upstream 58763 4975727 ~ 4991547 (+)
G140645 NA non-coding upstream 164492 4885619 ~ 4885818 (+)
G140683 NA non-coding downstream 46636 5102391 ~ 5108232 (+)
G140685 NA non-coding downstream 54064 5109819 ~ 5114502 (+)
G140684 NA non-coding downstream 62713 5118468 ~ 5164862 (+)
G140680 NA non-coding downstream 141871 5197626 ~ 5201086 (+)
G140734 NA non-coding downstream 147441 5203196 ~ 5203505 (+)
G140440 NA other upstream 264650 4780417 ~ 4785660 (+)
G140436 NA other upstream 270972 4737398 ~ 4774262 (+)
G138953 NA other upstream 1530245 3502072 ~ 3520065 (+)
G138915 NA other upstream 1563663 3484387 ~ 3486647 (+)
G138515 NA other upstream 3373450 1664408 ~ 1676860 (+)
G140862 NA other downstream 656857 5712612 ~ 5712702 (+)
CI01000027_05757143_05758496 NA other downstream 701227 5756982 ~ 5758881 (+)
G140924 NA other downstream 907451 5963206 ~ 5965326 (+)

Expression


Co-expression Network