CI01000027_05069310_05070638


Basic Information

Item Value
gene id CI01000027_05069310_05070638
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 5067917 ~ 5070868 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_05069310_05070638.mRNA
ATATAAAAATGCGATGTGTTTGGACATTTAAGCACAGTATATGGCATAAATACTCTACAGCACTAAACATGCAATACTTTAATTTAATGTAATTAAGAAGGCTAGTATATGACACTAGGTCAATAGAGTTAAGAGATCTAATCATCTTGCTGACCTAAAATCTAAAGGTGGTTTCAATGCATGCAATCCTGCATCAGGAATGAAGCAAGGTTATGCAACTACACTGAGATAAACAACTTCAATTTACTCTAGTCCAAATCCAATCTCTCTATCTCATGTTATGATGTGGCTAAAAGGTTAAAGAGCTATGGAGTAAATCAGCATGTCCTTACATCAAACAACGTTATACGCCTACAAATACACTATAAAGTTAGACTGACAGAAGTATGTTTTTAATTGCTGATAAACAACTAAGGCTAAAATTGCAGCACTATCTTTGCTTTACAGTTAGGAAGAATCTCTTTGTAGATATGTTCATACATCCAGCGTATCCAGGAAGATACATCATCGTATGGACAGTGATCATTAATTACATTCATTAGGGGGGGGGGGAAATTCTATAGCCTTACGGTAAGAAATGGACAGTAAAGTGGATGGTGAGGGTATGCCATGCTAGGATGACGTGACATGCAATCTGTTTTCATTTTCCAAATGTTGGCATTTTGCCCACTTCCTCTCTTTCCTCACCTGGTACAAAGCCTCCAGATAGACACAAAGAAATGGTGCATTCTCTATTAGAATGAGGTTCCTCAAATCACTAGTTCCAAATTCAGCATACATAGTGTAACATGATCATTATTGACCACTTTGAATAGATAGTAATGAAATTGATATCAAAACAGCTGCTCTTAGCTGCAATAGGAACTAAAGTTTTAGATCCTTTTTTTTTTTTTTTTTAAATATTGTATATTCAGTAAGGAATGACTTTACCAATGAACCACAATACTAATTTAGTTAACTGTTATTTTTTGAGCATAACATATTAGTTTTGTGCAAAATGGGGCTGTAGACAATGAGGTTTGCTAGAGGAATTTGACTGAGAAAAGATTCAGTGAATTTAGACCACATCCACTGTTGTTTTGACTTTCAGAAGAGTTTAGAAAATATGCAGGCGTTGAGAAGAGCACGTAACCAATTGTAAAATCCCTGATAATGAATTAACATTGTACCATACAGGGCACCAGAGTACCAGATAAAGAAAATACCCACTGTTTTGTAACATTATTTCATTTGTGACTGTTTCAAATGGCACTGATAGTCATTAATGTTATTTATCAGGAATAACTGAACAAAACCTCTGGGAATGCAGCTGTTATGGCAAACAGAAGTTTACTCATTTCTAAGATGTTTACTATAGCCATTTGCAACATGGCAAAACAGAAACAACAAAGAGATGTACGCGAACATTGAAAGATCGCAGGAGGTCTTGATAGGTCAGAGGTGGCGTTATCACATACGTCAGCTCAGTTCTGCTATAAAGAGCCAAGCCATCTGTGGGTCATCACAATCTCAACACAATTCTCTCGAGGACTGCAAGGAAGGAAAGACTGAAAAGATGAAATTGTACCTGGCTGCAGCCGTGCTGATGCTTGTACTTGCAGTACAGACAGAGGCCCAAGATGAGCCCACACTGGAGCAGCGTTTCGCCAAATTCCAGACTCAGGTGAAGGAGATTGCAGATGACCTGACAGAGAAGACCAAGGCCACATTTGAACAGATTGATAAGAGCGAGTTTGCTGTTAAAACCAAGAGCTGGTTTAGTGAGCAGTATGAGAAGATGAAGCAGGGTTTGGGTTTCTGAAACCTTCAATTAAA
>TU159886
CAGAGGTGGCGTTATCACATACGTCAGCTCAGTTCTGCTATAAAGAGCCAAGCCATCTGTGGGTCATCACAATCTCAACACAATTCTCTCGAGGACTGCAAGGAAGGAAAGACTGAAAAGATGAAATTGTACCTGGCTGCAGCCGTGCTGATGCTTGTACTTGCAGTACAGACAGAGGCCCAAGATGAGCCCACACTGGAGCAGCGTTTCGCCAAATTCCAGACTCAGGTGAAGGAGATTGCAGATGACCTGACAGAGAAGACCAAGGCCACATTTGAACAGATTGATAAGAGCGAGTTTGCTGTTAAAACCAAGAGCTGGTTTAGTGAGCAGTATGAGAAGATGAAGCAGGGTTTGGGTTTCTGAAACCTTCAATTAAAATAAAGACCGATGACCTTATACCCTTCATCTCTGCAACCCTGCAATTACTTTGTGATATGTGATATCACCTCCACCCTGTTGTGCCGAATGGCGCGTTTGTTACAGTTCTAAACAACTTCAAACTGTGATGATCTGCTTGTCATTTGTGTAATCTGTAAAATAGTTTACAATTTTGTGGGATGCTGTTAAATATTATGGAAAAATTTAAAATCTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_05069310_05070638.mRNA False 1815 mRNA 0.38 4 5067917 5070652
TU159886 True 596 TUCP 0.43 4 5069352 5070868

Neighbor

gene id symbol gene type direction distance location
CI01000027_05061061_05063086 APOEB coding upstream 4503 5059739 ~ 5063414 (+)
CI01000027_05050310_05055447 NA coding upstream 12162 5050310 ~ 5055755 (+)
CI01000027_05018992_05033275 NA coding upstream 33627 5018260 ~ 5034290 (+)
CI01000027_04978217_04987503 NA coding upstream 80414 4978217 ~ 4987503 (+)
CI01000027_04887494_04956477 KCNN3 coding upstream 110429 4887316 ~ 4957488 (+)
CI01000027_05071693_05072917 NA coding downstream 1041 5071693 ~ 5073136 (+)
CI01000027_05074328_05075547 NA coding downstream 3676 5074328 ~ 5075740 (+)
CI01000027_05082223_05082843 APOC2 coding downstream 10964 5081616 ~ 5083193 (+)
CI01000027_05157946_05159188 NA coding downstream 85481 5156133 ~ 5159246 (+)
CI01000027_05205628_05209568 NA coding downstream 134435 5205087 ~ 5210170 (+)
G140674 NA non-coding upstream 28430 5039241 ~ 5039487 (+)
G140672 NA non-coding upstream 29119 5038545 ~ 5038798 (+)
G140437 NA non-coding upstream 76370 4975727 ~ 4991547 (+)
G140645 NA non-coding upstream 182099 4885619 ~ 4885818 (+)
G140683 NA non-coding downstream 31739 5102391 ~ 5108232 (+)
G140685 NA non-coding downstream 39167 5109819 ~ 5114502 (+)
G140684 NA non-coding downstream 47816 5118468 ~ 5164862 (+)
G140680 NA non-coding downstream 126974 5197626 ~ 5201086 (+)
G140734 NA non-coding downstream 132544 5203196 ~ 5203505 (+)
G140440 NA other upstream 282257 4780417 ~ 4785660 (+)
G140436 NA other upstream 288579 4737398 ~ 4774262 (+)
G138953 NA other upstream 1547852 3502072 ~ 3520065 (+)
G138915 NA other upstream 1581270 3484387 ~ 3486647 (+)
G140862 NA other downstream 641960 5712612 ~ 5712702 (+)
CI01000027_05757143_05758496 NA other downstream 686330 5756982 ~ 5758881 (+)
G140924 NA other downstream 892554 5963206 ~ 5965326 (+)
G141052 NA other downstream 1200715 6271367 ~ 6271600 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location