CI01000027_05272101_05283619


Basic Information

Item Value
gene id CI01000027_05272101_05283619
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 5270331 ~ 5283941 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_05272101_05283619.mRNA
ATATAAATGGCCTTGGAATACTGAAAGAATAAAACCAAACCATGATACAAGTTGTAATGTCATTGGGTTTCAATGAGATTATGAAATGGCAGAATATGTCGTCACTGTCAGAGACACTGAATACAGATTCACTTAATGCATCCTCTCTGTCAGAGACATATGACACAGATGCAGAATATCTCCACATTCTCAGAGATACAGAAATAGAGAAAGCACTGTAAGAACAAGTCCTCCGTAAGCACACTGTATTGAATTAAAGAGTTGTTAGAAAAAGTGTGATTATCACTGAGCTTTTTTTAAAGGACTGTTTGAGTGTCTCAGATTTGTTTACACCAGAGATAACTACAGTACAACTGACTATCGATACAGATTTTCTGATTCAATTCAATTCTGATTCACAAGCTATTGATTCAATTCAATTTGGCTGGATATGTTTCTAATTCAGTTGGGTATAATGTCCATAGTGTTTCAGGCTGATGTAAACCACTAACTAATCTTTCTGAACTATGCTGTATAACAACCGGCTCATGAGAGTCATTTGTTTAGGGCTACACTGGTCATGCTTTGTTATGATCCACAACAAAGAACCAGTTCATAAAATTCATTTATTTCATCATTAGATTATACTGGTTGCATGTTTGTTTTGTTGTTTTTACATGCAGCCTGCAAAAACAACTTAAAGATGTTTCTTGCCATTATTTTGAGGTACATACTTTATTCTTTTTAGTGAAACAAATTCAATACACATTGCAAACATACATTCACTACTGTTGGTAAAATATGTAACGTAATATTACGTAATATCATACGTAATATTTTATGAAAATATACATTTTAAAACAAAACAATACAGCTCAAACTATGCAGTTGAGTGAGTTTTGTGTATTCTGTACGAATACACTTTCACTCCCTGAAACTAGGAACTGTAGAAAGTTGTCAAAAATATAATTTTTTTTTAATACATATTGATACTGAAAGTAGTACCGTGAGTACCTAATTGATTTCTTTTTTGTGGCTTATTGTGATTAAACGGCCAAATACACACAAAATTATGTCAAAATGACTGTCTTGGAGAGGGTTCAGGTAAACTTTTGGAATGTAAAACAAACTATTGCAACAAAATTACCCAAATTATCTATATAGCAGTATATATGGTTGTTTTCCCTGAAGTATTGAAAATCGATATTTTTTAAGGTATCGTAATGAAGTATTGTGACAACACTAGCAGTAAAAGACTGATCTTGCTTGAATTTTAAGAACTGATATTGGGAATGCTTGAATAAAAACTGATATTTTTATCCAGACCTAGGGATAACTATGTATTATGTCACAATTTCAACCAAAGCCTGCTTGCTTAGTGAATCTGGAACATAGCAACATCATCAGATATTAGATTTGGCACATTATTGGTACAAAATGTACGCCAGTAATGTGTAAAAACAAAAACATATTCACACTCACACTCAAATCACACACAGCATTCCAGTCCAGCATTACAATCCCAGTGTGTCCAGCACATCTAAATTCATAAAACGGCAGATCAGCATGATCCATTCCGCGCTAAATCTCAAAACACTATTCTTACCATGTCAGTGATACGTGCCACATTATTTAAGACTTATATTCATATAATCATTGCTGTTTCTTTGTCAAAAATTGTGTTACATAACCATCACTTCATTGATTTGCCAACAGTGTGAGCAGTCATGGCAACAGACTGAGAACGGAATTAAATGAAATTATGGGCAACAGTCTCGGGGGAAGGTTTCAATGAAAGAGGAAAATTTCCAAAAACAAATTACCTCAACAAAGGTGGGCGAGACCCAAAAGCGAAATGAAAAGAAAGGTATTGGCTCTTTTAACAATAAGTACAAACATAATTTCACACTAATATGCTCTGTCTCCTTCCGGTTTACTCTATCACCCTATCCCTACCCCCTCTATCGCTCTCTCCATCACCTCGCTGTCATTAGTATGGCCGAGGTGTCAGGCAGTGGCGATGCTGAGCACCGAGTTCAGGCAGAGGACAGCGAAAGAAAAATAGGAAGACAGCAGCTGGTAGGAGGTGACAAGTTAACTTCCCTTAATGTGGAGCTAACTAACAACAAACAACCCAATCTACCGGAGGGGGCTCGCAGGTGCCTGAGAAAGGGCTTCCTGATTAGCCTTCTAATCTCGGCGAGTGTGAAGAGCGTTTACAGAGCCAGCGGTTCCTCTGCCGGTTCGCCAAGCCCCCCGAGTTGCGCATTGCCAATACCACTAGATGGGTTTTTCGGTTGCAGAGAGATAGCAGGAGGGCTGGAACGGAACCATCAGGAAGCTGAGACACTGCGAGCATGTGTGTGCGCTGGTGATAAAGTGCTGTTGCCCACGCGTGGCGTCGGGGATGGACCGGGCAGCGGGATGCCCGTCGGAGAGGCAGCTACACACCCGCGCTGCGATCTGGAGTACAAAGAGAACATCTCTTGCTGTGAGCAATCTGTACTCTCTCCGATGCCTTCTCTCTCGTTTGTACATCTCTCACTCAACCTTTGCCTGCTTCGGTTTTAGAGGCAATTTGTAAAACACGGACCTCCAGTCACCTCTCCCCCATCCCATAGTGCCTCTCTACGTGATTGGTTCACATGTGCCCCCGTCACATAGCTGCTCATTCTGTATTTGCAAATCTCCTCTCTAAGAATGGAAAATGCAAGTTGATGATAAAGTAAGATGTAGCGATATAAAGTACCAACTCAAGTAAGAATGCAATAATTAGGTCTGTAAATGTCAAAAATAATGGACCAGTGTCTAAATATCAGATCTGCATTCGATTTAGACTAGAACAGTTCATTTAATTATTTTTTTTCTCTGAAAATTTACTTCAATAATTGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_05272101_05283619.mRNA True 2872 mRNA 0.39 5 5270331 5283941

Neighbor

gene id symbol gene type direction distance location
CI01000027_05205628_05209568 NA coding upstream 60161 5205087 ~ 5210170 (+)
CI01000027_05157946_05159188 NA coding upstream 111085 5156133 ~ 5159246 (+)
CI01000027_05082223_05082843 APOC2 coding upstream 187138 5081616 ~ 5083193 (+)
CI01000027_05074328_05075547 NA coding upstream 194591 5074328 ~ 5075740 (+)
CI01000027_05071693_05072917 NA coding upstream 197219 5071693 ~ 5073136 (+)
CI01000027_05398796_05408689 NA coding downstream 114467 5398408 ~ 5410067 (+)
CI01000027_05444238_05445884 NA coding downstream 159942 5443883 ~ 5446211 (+)
CI01000027_05461577_05471900 YWHAZ, YWHABA, YWHAB, 143B1, YWHABL coding downstream 175652 5459593 ~ 5472892 (+)
CI01000027_05483140_05487852 NA coding downstream 198933 5482874 ~ 5488587 (+)
CI01000027_05489565_05492924 NA coding downstream 205624 5489565 ~ 5492969 (+)
G140748 NA non-coding upstream 31004 5223627 ~ 5239327 (+)
G140734 NA non-coding upstream 66826 5203196 ~ 5203505 (+)
G140680 NA non-coding upstream 69245 5197626 ~ 5201086 (+)
G140684 NA non-coding upstream 105469 5118468 ~ 5164862 (+)
G140685 NA non-coding upstream 155829 5109819 ~ 5114502 (+)
G140837 NA non-coding downstream 83093 5367034 ~ 5367304 (+)
G140838 NA non-coding downstream 83442 5367383 ~ 5367631 (+)
G140739 NA non-coding downstream 86820 5370761 ~ 5376536 (+)
G140832 NA non-coding downstream 127341 5411282 ~ 5412302 (+)
G140843 NA non-coding downstream 128486 5412427 ~ 5412735 (+)
CI01000027_05069310_05070638 NA other upstream 199463 5067917 ~ 5070868 (+)
CI01000027_05050310_05055447 NA other upstream 214392 5050310 ~ 5055755 (+)
G140440 NA other upstream 484671 4780417 ~ 4785660 (+)
G140436 NA other upstream 490993 4737398 ~ 4774262 (+)
G140862 NA other downstream 428671 5712612 ~ 5712702 (+)
CI01000027_05757143_05758496 NA other downstream 473041 5756982 ~ 5758881 (+)
G140924 NA other downstream 679265 5963206 ~ 5965326 (+)
G141052 NA other downstream 987426 6271367 ~ 6271600 (+)
CI01000027_06706050_06708485 NA other downstream 1422436 6705983 ~ 6708513 (+)

Expression


Co-expression Network