CI01000027_05398796_05408689


Basic Information

Item Value
gene id CI01000027_05398796_05408689
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 5398408 ~ 5410067 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_05398796_05408689.mRNA
CTATATATAGATGAATCGACTGAAACACTAATATGAGTTATATAGGCAAAACTATTACATCATGGAGCTACATAATATACTCTGATTAGCTCATAAAAGATAATAAAATAATTTAGAGGTGTTTCTCTCACACTTCCTTGTGGGAAAGAAATATCTGTGAGTGAAGCAGTAATTTGATTAATATTTATATTAGATCTTCCTTGTTTATTCCTGGTGGCTAGATGAAGTATTGCAGCTTAACTGTGATCTATACAGCTGATTTCAGCTCAGTACCGCTACTCAGTGCGACATCTGGTAGGCATCAAATCTGACTCTAAATCAGTACCTAAGCATCTATTCAGACACCTCTGATGGGGCCCCTCTAAAGGATGTACGTCACAGCAGGAAGATGTGGTTTGCCACGAAGAGCGTAACGGAGAAAGGAAATAGTTACAGAGAATGTGCTGTGAGAACCTTCTCCATAGACGCAGGGTTTCTGATAAAGAAGACAGCACCGAAGGAAAAGGCGTGTTACCCTCTGCCCACAGTGAAGAAACTCCTGGAGCAGAAGAGAAAGAGAGAGACCTCCTCAGCACCCCCCTCCTGCTCTACAGCATCGTATACTGCTGGTGGTGCTGCATCTGTCCCAGTGTTGGCATCAGTACATTCTCCCACTGCCGGAACCAGTGCAAGCTACACAGACATGGCCGCAGTTAGATATGACCGATGGGATGTTCCCAGCATTCATCAGGCACATTCCTCCCTACAGCAGTGCAACCCTTTCTCATTCATGCCCAGTTCCTCCGCCACACAAAACTTTACCCAGACTGGACAGACGCTTGCTGCTGGCTACAGTCCTCAGCAGATGCCAGACTGCCAGGACGCCCAGACAACACAGCAATATTCTATAACAGAGTGCCCTGTAACTGCAGCCGGGACTGATATGACTGGGACAGTCCCCATTCAGAGCTCCGGCTTGTGTTGGCCATCTGAATCCAGAGCAGAGGATCACACAAGCCAATACGTTCTCCAAGATTTCAGGCCCCAAATGGATATGGTGAAGCTGCAGGAGGCTCGAGTCTTCCTGCAGAATATGGATTACAGTAGAACCACCTGGCAGGATGATGATGGGGACACGATTTTACATATCTACACTGCGAAAGGCCTGAGGGAATATGCTTTTGCTGCTGCGGAGAAACTCCGTGGACTGGGGAAGTTGGACTCTAAAGAACACAAGGGCAAGACTGCTTTGCTGGTGGCCGTAACTGCTAATCAGCCAGATATAGTCCAGGATCTACTCTATCTTGGTGCAGACATCGGCATCTGTGATGTCAACGGTCAAACTGCGCTCCACCTGGCTGCCACCTATGGGTTCCCCCGTGTCATGGAGGTTATTCTCTTTGCTGGACTGCGAGTGGACCTGGAAGCTCGTAATTTTGAAGGCCTGACTCCTCTGCACTGTGCAGTGATCTCTCACTGTGCCACGATGAAGGCTATAAATGCCTCCTCCTCATCCTCAACATGGCTAGTCGATGGCAGTCTACAGACTCAAGCAGAAGATAAACTGACGTGTTTGCGGCATCTTATAAATGCTGGGGCTTCAGTTCTCAGTCAGGAAATCAAAAGCAACAAGACAGTTCTTCACCTGGCAGTGAAGGAGGGGAATATCCATCTCGTGCGCTTCCTCCTGAGCCTCCAACTCTCCAATATACAGGCGTTCATCAACATGAAAGCTCACGGACATACCGCCCTACACATGGCCGCAGGGCTGCACGGAAACCCTTATCAGGAAGAACTGATCCGGCTGCTGCTGAATCGTGGTGCTGATCCCAGCATCCGCAACCTGGAGAACGACCAGCCCGCTCATTTACTGCAGAGCGGAGACAAAGGAGAGAAACTCAAGCTCATCTTGAAGAAGAAAAGTGCCTCCTCTAGGCGACGTTTTACATCCTTACAGGACCAAGAGTGACTAGGACTGATCAGTCCAAGCGTTCCCCACTTTCTCCAATAGAGATCTAGATCAAATAACAGTACGCACAAAAACATCAGTCTTGATCAAGTCACCATCAAGATGTAGATAAGAACAATTATGGATTGACCTTTGTCAAATAATTATGACCAGAAAAAGCTTTTAAAATTAACCCAAAGACATTCTTCCTAGACTAGAATGAATCTAGATCATCCCTGGAGAAGGATGGGTTTATCTTCAGTATCCTTTTATGAGGATTTTCACTTATTGCATCATTTTAGTATGACAGTATATCTTGTTTGAAGGATCATTCATTGATTCTGTACCATAATGCTGCTTTCCAGTTTATTTAAATGCTGAACATCAGCATTTTACTATGTTCATGAATAGTGATTTCAATGAAATCATCATGAGGACTGTCAGTACCAGTCAAATTTCCACCTTCAATTATAAACCATATTGGTTTGCTTACATGATCTTAACCCACTGTATCAGTGGAATTTTTTTATATGTTTTTAGAAGTATTTATATGGCTTTTGGTTAGTGCGTGTTGCATATTATTCTCTGTGCTCTTGTTCATGTTACTTTCACTCAGGGGAAAGGTCAGTTATTTATTTCATTGTTTGATATGAATGACAGCAGTTCTCTATGTAATGCACTTTTCTCAGCAGCACACTTGATATCATAGTTGTCCTTACAGGAGATGTGTCATCTGACCGTGTATGTGAATGTTATTTTGATGAGTCATATACGAGGGGGTGAAATGTCAGGGGGTTCTGAGGTAAGAAGGTAGACCTTCAAGACCTTTCAGAATCAAGTCACAATCATTAATATGATTTAACAATGTTAATTCAGTGGAATAGTAAAGGTTTTTTTTTGTGTGTGGGGATCGTGTCCATCTTGTATCAAGATTTCAAATGTTGGAAGTTGTTGTTGTTGTTGAGTCAGAGACATACATGATTCACCGTGCTGAAGTACCTAGAGTCCCTCTGGAAATTCAAATGAGGGAAAACACACGCTAATGTCACTTTCTTGTAAAACAGAGAGGACTGTGGATTTATGAGAATTAGTATGAAAACAATTCCATCTAGTGAATTCATTTGCTCATTGTTTTAATAATTATCGCAAACACTTAATGAATTAAACCATCTGACAAAACCAAATTCTGAGAGTATATAAAGTAGCATTAAAATCAGCTTGATTGAATGTACAATGTTTTATTATATCATTTATGAAGAGTGATATCATTATGAAAAACATTTATAGTTATTCATGTATTGCAAATCATTAATGTTTTATTAATGTGTTTGTGTGTTTTGCATTATATGTCAACTGACCAAGCCAAACTAAGTAAAGCTGATCAAAGTAAAGACCAAGA

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_05398796_05408689.mRNA True 3326 mRNA 0.42 12 5398408 5410067

Neighbor

gene id symbol gene type direction distance location
CI01000027_05272101_05283619 NA coding upstream 114467 5270331 ~ 5283941 (+)
CI01000027_05205628_05209568 NA coding upstream 188238 5205087 ~ 5210170 (+)
CI01000027_05157946_05159188 NA coding upstream 239162 5156133 ~ 5159246 (+)
CI01000027_05082223_05082843 APOC2 coding upstream 315215 5081616 ~ 5083193 (+)
CI01000027_05074328_05075547 NA coding upstream 322668 5074328 ~ 5075740 (+)
CI01000027_05444238_05445884 NA coding downstream 33816 5443883 ~ 5446211 (+)
CI01000027_05461577_05471900 YWHAZ, YWHABA, YWHAB, 143B1, YWHABL coding downstream 49526 5459593 ~ 5472892 (+)
CI01000027_05483140_05487852 NA coding downstream 72807 5482874 ~ 5488587 (+)
CI01000027_05489565_05492924 NA coding downstream 79498 5489565 ~ 5492969 (+)
CI01000027_05542184_05551414 NA coding downstream 131348 5541415 ~ 5553150 (+)
G140739 NA non-coding upstream 21872 5370761 ~ 5376536 (+)
G140838 NA non-coding upstream 30777 5367383 ~ 5367631 (+)
G140837 NA non-coding upstream 31104 5367034 ~ 5367304 (+)
G140748 NA non-coding upstream 159081 5223627 ~ 5239327 (+)
G140734 NA non-coding upstream 194903 5203196 ~ 5203505 (+)
G140832 NA non-coding downstream 1215 5411282 ~ 5412302 (+)
G140843 NA non-coding downstream 2360 5412427 ~ 5412735 (+)
G140933 NA non-coding downstream 68895 5478962 ~ 5479215 (+)
CI01000027_05563090_05579132 NA non-coding downstream 150284 5560351 ~ 5579146 (+)
CI01000027_05071693_05072917 NA other upstream 325272 5071693 ~ 5073136 (+)
CI01000027_05069310_05070638 NA other upstream 327540 5067917 ~ 5070868 (+)
CI01000027_05050310_05055447 NA other upstream 342469 5050310 ~ 5055755 (+)
G140440 NA other upstream 612748 4780417 ~ 4785660 (+)
G140436 NA other upstream 619070 4737398 ~ 4774262 (+)
G140862 NA other downstream 302545 5712612 ~ 5712702 (+)
CI01000027_05757143_05758496 NA other downstream 346915 5756982 ~ 5758881 (+)
G140924 NA other downstream 553139 5963206 ~ 5965326 (+)
G141052 NA other downstream 861300 6271367 ~ 6271600 (+)
CI01000027_06706050_06708485 NA other downstream 1296310 6705983 ~ 6708513 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_009905 NA non-coding NC_007127.7 CM002900.2 24565734 ~ 24573801 (+)