CI01000027_05675953_05678901


Basic Information

Item Value
gene id CI01000027_05675953_05678901
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 5675145 ~ 5679050 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_05675953_05678901.mRNA
GTATAAAAATAATCATGAGGTATTTTGCTACTTATATAGTTTTCTATGCGTTATACATTTTTATATTAATAAAGTCTTTGGAAGTTACAAATATTGAGGCAATATCCTGCATTAAAATTACAAATGTGGGTATTACTGATGACATTTTGCATTTATGGATATAATATTTTGCCATCAAAATAATACAGTGATACTATTTCAACTCAGTACAAATGCTTGTATGTGACGCAACAACTTTTTAAAATTGGTCATGTACCATTAAATCAAAATTCCAATATGGCAGAATATAATATTATCTATATAATATTATGTTATGTAGTTTCACATTGATGTTTTACTACAACTAACTACAACAGTATTAAAGGGATAGTTTCACCCAAAAATGAAAATTGTGTCATCATTTACTCACCCTCAAGTAGTTCCAAACCTGTACAAATTACTTTGTTCTGCTGAACACAAAAGAAGATATTTGGAAGAATGTCAGTAACCGGGCAGTTCTGTTTGATTACTGACATTCTTCCAAATATCTTCTTTTGTGTTCAGCAGAACAAAGTAATTCATACAGGTTGGGGTCTACTTGAGGGTGAGTAAATGATGACACAATTTTCATTTTTGGGTGAACTATCCCTTTAATATATCCAAGTACTATGTGGATAACAGGTGAAGCAGCTGCTAATGTGCTGATGAAACTTATCGTTAGATGCAGTACATATTATAATATATTATCTATATCTTTTATTCCTTTTCCTTTGTCTAGTTTCAGCTTGAGTGAGGGGAAACTCAGGCACCTGCAGGCGACTCGCACATCATGCTTAAAGGAGAGGATAAGAAGAAAGGAACCAACACTAATGAGGATGAAGCCAATGAACAATCTGTGAAGAGAGGAATGGGGGAATTAATTTCTAAAGGTCTGGCATTAAGCTCCCAGAACAGAAGAGTGGAGGAACCGTCGCCTGCAGGCGCTAATGTCCTACCTGAGTCCTTGCCCGTTAATGCTGATGAAAAAGAGAGCGAAAAAGGCTCTTGTGAAGCAGATGTAAATACATTTCCACAGCAATTAAACCCTGTCAAAGAGGCTGATATGGATGCACAGAAATGTTTGGAAGACCTTGATCAGCCAGAGTCAAATTCTGATTGTCTTTCCAGCACCACAGATAATGAACTAAAATCACTGCCGCTTAATGCAGAATTAAATAAACCACAAATTGACACTCAGATGTCTGTTCAAACAGATGAAATCTCAAGTAGTCAGTCTGAAAGAGAGTCAGACAGGAATGAAGCCCACTGTTCAACTGTCCAAACATCTGAGAAAGCTGTCTGTGATACATCCTGTCCTGTTATAAGTGATAGCCAATGCGAAGAAGATTCTGACAAACAAATCCACGAGGACACTGCAGATGCAAAAAATTCTGACACTGAAAATCAAGAAGCCTTGCCCTCTGATGCATTAAACCAAACTGCTGTAACATTGGATGATGCCTGTGTAGATAATTCACCAGATAAAACGCAAGAGTCTAATTCAGAGCAGAATAACCAGACACCTTCAACCGAAGCCAATGATGAGACAAGCAGTATGGAGATCACAGAAAGCAAACGTGGATTTTCTTCATTTTCTCGCGGACGGCCACGCAAAGAGAAACGGGTCATCAAGTGTGAATATTGCGGGCGCCCGTTCAATCATGCCTCTGCGTATATCATTCATCTGCGTGTCCACACGGGTGAGAAGCCCTTCACATGCCAGGATTGTGGCAAAGCCTTTGCTCAACTCTCTAACCTTCGATCTCACAGCAAAGTCCATAAATCCAAAAGTCGGAAACATGCACACAGACACCACGACCGAAGTAGAGCCACGACTGAGAAAAGTGCAGACATGAACCAAGTGAGTGTGATCAACAAAGTGGAGAGTGATTGTCGTAGTAATCAAATCACCCCTAGAAGGAGGAGGGGGCGAGGAAGAGGGAAAGGGAAACCCCAAACGTGTCCGATCTGTGGCAAAGTCTTTTGCTACAAGTCTGTCCTCAAAATCCATCTTCGTATTCACAGTGGAGAAAAGCCATACTCTTGTAAGGTGTGCGGAAAATCCTTTACTCAGGCGTGTACTGCACGTGTCCATGAAAGAGTGCATTGGTCCATCAGGCCTTTCTTCTGTTCAAAATGCGGTAAGGGATTTTCTCAGATCGGGCCATTAAAAATACACACTTGTGAAGGTAAAAGAAACCCACATGCCACGTTGAAAGAGATGGAATTGGAAGGTGTTATCAGCTTCAGGTGTCACCTTTGCAAAAGTTGCTTTGGCACCAGAGATGAGTATGAATTACATTTGCAAGGACACACGGATACCCAGCGTTACAGCTGTGACTGCTGCAAGCAGACCTTTAGTCTTCTCTCAGAGCTACATACGCACAGCAAGCACTGCGTTTCCATTCGGCTCACAAAAACCAAGTCTTCTGGTTACAGTTCCTCACACAGATTACAACCCCAAAACTCCTTGAGAAGAAGAACTGCACAAAAAATGCGAAGTTCAAGTCCAGTAAGATCTCCTGAAAAAGACTTTTCCTTGCTGAGGAAGTTCAAAAGAAGCTCTTCTTTACTTGCTTGCCCTCCTCAGGTCATGGCCACCTCTGTTTATGACTCACAGAATAATCACCATTCAGTCAATCAGCCAATCAAATGCAGCTATTTCGTATCTCAGCTGAACAGTTCGCACCAAAAAGCAGATCCAAGAAAGTACTTCTGCCCACAGTGTGGACGAGTATTCCAGCATGTAGGAAGGCTGAGAGCCCATATGCTCACTCATCCGCGGGCTCGAAGCTTCACGTGTATCGATTGCAACAAGATGTTTAAAAACTGGAACAAATTTTGGATTCATCAGCGGCTGCATAGACAGAAAAGAGGACGCTTTTTTTGTCCCAAGTGCGGTCAGGGGTTTCGATTTGTGGGCTTGTACAATAAACATCTGCAGAAGCATCCAGAACTTAACGCTCACGTTTGTCCCTTCTGTCCTCACACATTCTCAAATGCACAAAAGTTGAGAAATCACCAGCAAGAGTGGCACCGCTCAACTATGCCCTTTATTTGTGATACTTGCGGAAAAGGTTTCGCAAGTGCGATCCTTCTTAAACGACACAGAGTTGTTCACTGCACAAATGATCCAATGGAGACACATTACACCATTGATCCGCAGTCCGCTGTACATCCCTATGAGTGCGGTACGTGCAGTGCCAGTTTTGAGAACTTAGACTTGCTTTTCCACCATCAGCTCTGCCATAAAACTGTAGAGAAAGAACCAATAGCAATGAAAGGCCAGCTACTTATAACAAGGGAAAAACATCAATCTCACCACCTCCAGCGTCAAAGCCACAACTACAGCCTTTCTGATAATCAGAGACAAGAGAAAATCTCCTCTTCAAATGGTGCAGAAATGCCTCATTCATTGTCACACGTAGGTTCCTCGAGCTTACATCCATTACAAAAGCAGAACACGGAGGCCCCAAGCACCACCAGGACATTGGCTTATCTGTCATCCGATCTACATTCCATTCCTAATTCTCAGAATAATGAGAGGCAAATGGTTAAAAAACACACTAAGGACAGTTTTTCAACAATGGAAGAATTAAATGGTTCAAGCCGGTCACCGTCTGTACTGAAGACAGAGGACACAGCCAGTGACTTAGTTTGCACTGAATGTAACGCTTGTTTTTCCAACCTTCAAGAATTGCATGGACATTACTTGGAACATGCCAGAGGAGAAATATGAATATTCTGTAAAAGTTGTTCTCTTTTGTTCAGCGAGTGCGTGAGAAACCTTTGTATTGGAATGACATACTTCTGAAACTAGTGAAAATGTTTGCTGTATATGAATATGTTTTTCATATGATATCAACATTACTGATGTACTGACAAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_05675953_05678901.mRNA True 3906 mRNA 0.41 1 5675145 5679050

Neighbor

gene id symbol gene type direction distance location
CI01000027_05668637_05672662 NA coding upstream 2081 5666375 ~ 5673064 (+)
CI01000027_05659449_05662678 NA coding upstream 12188 5659449 ~ 5662957 (+)
CI01000027_05657678_05659351 NA coding upstream 15794 5657678 ~ 5659351 (+)
CI01000027_05654573_05657504 NA coding upstream 17641 5654573 ~ 5657504 (+)
CI01000027_05624635_05626386 NA coding upstream 48540 5624526 ~ 5626605 (+)
CI01000027_05684713_05689894 NA coding downstream 5545 5684595 ~ 5689916 (+)
CI01000027_05691123_05698421 NA coding downstream 11967 5691017 ~ 5698620 (+)
CI01000027_05701396_05711410 NA coding downstream 21826 5700876 ~ 5711460 (+)
CI01000027_05711573_05714490 NA coding downstream 32427 5711477 ~ 5714573 (+)
CI01000027_05719979_05720814 NA coding downstream 40853 5719903 ~ 5721334 (+)
G140946 NA non-coding upstream 64967 5609873 ~ 5610178 (+)
G140920 NA non-coding upstream 67030 5602529 ~ 5608115 (+)
G140929 NA non-coding upstream 107492 5566567 ~ 5567653 (+)
CI01000027_05563090_05579132 NA non-coding upstream 108675 5560351 ~ 5579146 (+)
CI01000027_05542184_05551414 NA non-coding upstream 121995 5541415 ~ 5553150 (+)
G140894 NA non-coding downstream 71181 5750231 ~ 5753375 (+)
G140950 NA non-coding downstream 142760 5821810 ~ 5822331 (+)
G140869 NA non-coding downstream 227746 5906796 ~ 5911149 (+)
G140893 NA non-coding downstream 279239 5958289 ~ 5959908 (+)
G140875 NA non-coding downstream 334639 6013689 ~ 6017411 (+)
CI01000027_05071693_05072917 NA other upstream 602009 5071693 ~ 5073136 (+)
CI01000027_05069310_05070638 NA other upstream 604277 5067917 ~ 5070868 (+)
CI01000027_05050310_05055447 NA other upstream 619206 5050310 ~ 5055755 (+)
G140440 NA other upstream 889485 4780417 ~ 4785660 (+)
G140436 NA other upstream 895807 4737398 ~ 4774262 (+)
G140862 NA other downstream 33562 5712612 ~ 5712702 (+)
CI01000027_05757143_05758496 NA other downstream 77932 5756982 ~ 5758881 (+)
G140924 NA other downstream 284156 5963206 ~ 5965326 (+)
G141052 NA other downstream 592317 6271367 ~ 6271600 (+)
CI01000027_06706050_06708485 NA other downstream 1027327 6705983 ~ 6708513 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_009918 si:dkeyp-84f3.9 coding NC_007127.7 CM002900.2 25074029 ~ 25080476 (+)