CI01000027_05740951_05748956


Basic Information

Item Value
gene id CI01000027_05740951_05748956
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 5740951 ~ 5748956 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_05740951_05748956.mRNA
ATGTCAGAGTTTACCCTCGATATCCAGCTGACAGAGTTGGGTTTTTCAAGCTGGAATTTCCCTCTCTGTGAGCCACAGAGTGTTAAGGAGACATTTTTGCCGACCCCGAACAGCATTGAAAAGCCAGCACCTGAGACTGAAATACATGTAGACTGTCATGAAGATGCCAGCATTGTCCCGAGTGCATCAGCTGAAAAAAGCTTTTTGCTGGACCACCAGTATTCCTCTCCCTTCAAGCATGACTCTTCATCTAAAGAGGAAACCGCTCAAGGTAATTTAAAAATCATTTCCACAGAGAAGAAGGATAAAGTCATTTGCACTTCGTGGAAAAGAGAAAGAAGAGAGGGGACAGAACAGAGAAACGATGACAATGAGCAAAGTGAACAAGAGGGAAAGAAATACAATGAAAAGGAACAGAACTGTTCAGAGGTGAGCCAGGAAGCCTCTAGTGTTACGACAGATGATGTTATATCTGGTGAAGAAAGGACTGATGAGGAGGTGGAATTTCGTCTGTTGATACATGTTTTTTCTTCAATTTCAGAGACAAATGGATGTGCAGAGAATGAAGAGAATCGCTGCCATGTGTGTGATCTTACCTTCTCCTCTCTCTTCTTACTCCGAGAACATTTAAATATGCATACGGGTGTTCGCCCCTACCGCTGCGATGAATGTGGCAAGCAGTTCTGCCAGTTAGTCAATTACCGCACTCACCTTCGCTCCCACTCGCAAAAGGCCTCTATCCACTGTCGTGTTTGCTCAACCATCTTTGAGACCGAGGAGCAGCTCCAGCAGCACTTGGACACTAACCATTTTGAGAAAGAGTTCTACCAGTGTGATTTTTGCAAGCAGATTTTCACTGACCTAGATGTGTGCAAGGGTCATGTAGAAGCACACAGGCAACAGGCGAAACGACATTTGTGCCTCAAATGCGGCTCCAGTTTTCGCCTTCGCAACTCGCTGCTCCGTCACTTGGAATGGCACAGCAGAGGCATCTTCTCCTGCTCGGACTGTGAGCGGACCTTCTCCAGCAAGGCTTCTCTGTTACGCCACAGTTTCTCTCACTTGGGTGTCTTGCCGTATACGTGTCTAAAGTGCAAACGTCATTTCCGCTTGCCCTCTCTCTACCACGGCCACGAGTGTAAGCCGGAGAGCATTCAGTGCATGGCGTGTTTGGTTTTCTTTCAGAGTCAAGAGGACTTTGACAAGCATAAGAAGGACACAGGATGCTGGGGTCATCAAGGGGCTTTGCCTACCAAGACAGATGAGATCCGCTGCATGGAGTGTGGCCAAGTCTTTGCAAGCATTGAGGAATTAAAGAAGCATGGGAGCACTCACCAGAGGGTCCTAAAATGTTCTGAATGTGGGATGGGTTTCCGCTCGTCACTCATGCTTATGTCACACATGGGGGGGCATGCGGCACAGCGGCCGTGTCTCTGCCAGGACTGTGGCCTGGGATTCCCGCATCAACAGGGTTATGACAGCCACCTGAAAACGTGTGGAATGGTAACGCCACCTGTGGCTTCTGTGAAGAAACCCAAACTGAAACCAACCCCCTCTCCACAAATAATGAAACCAATTGCACCTAACATAGTCTTCCAAACTATTGCTCAGGCCTCAAATCCTGTCACATTCTCCAATAGCTTGAAGGAGGTCCGCATGGTTCCATTAGCTGACCAGAATAAGTCTGCTGATGGTACGTGGAAGCTTACCTTAAATAAAGAGCCTCCTCCAGGTATGCCTTTAGTCATGCTTGTGCCAGTTTCCACTACACAGTACTCCTCTACCTCAGGTCCTGCCAAGACATCCCAAAACTTTTTACCATCGTCTCTGGTCTTAGAAACACCTTCATCTGCTCCACATGTAATTTCCATGCCGGTGGTCCCGCCTGGCACTGTTATTAGCAAAGAGGCAGAGAAAGACAACGTAGAGCCCTGCAGAACCAACATTCCTTCAAATACACTCATTCCAATGGAAAGTCATGACAGTTCCTCTAAGAAGAAGTGGACCATTGTAGAAGATCAGGGTTTTGTTCAAGTTTTTGGTACAGAAAACTTTAAGGCAGGTGAACAGGCTGCAGGTGTAGCGGAAGCAAATCAGGGAACGAACGTTACTGTGCAAGGAGAGGTGGAGAATGAGCAGAAAAATCAATCAAATATGAAGCCTAATGCATTGAGGGATGAAAAAACAGATCCAGGGTGTTCATCAGATGCTGCATCTCTCAATCCCACGTGCCCTGTGACACCATTACGCCTAATAAAGGTCAATGAGGAGAAGGATGACATCAAGAAAAAGTCTTCAAATTTGAATGACAACTCCTCGTCTGTTATGGCAGAAGTACAAGTTAGTGTGCCTTTCATGAGGAAATCAGAGAAGCAGATGCTGGATAAGCAGGACAGTAGAGATCAGAGATTTTTCAAAGAAGTCAAGTCATCTGACAGGATGTGTGCAGAGGCACAAATGGAATTTACCATGACGGGGGACAAATCAGAAAATGGTCCGCAGGGGCAAAATGAATCTGGTTTCGATGTAGAGGTGGAAATTAATGAAGATGTGGATTTGAGCAGTATGGAAGTGGAGATTGGTGATGAAGACAGTGGAGTGGATATGTTGGACGGTGAGCTTCATGAATGTGTGACTTGTGGACAAGTCCTTCCTGAAAAAGATATGATCCAGCACTACATGAAGCATGCAGCCGTCACCGACAGTCCTGAGCGCTCTCCTACTAACTGTCCCTCTCACACTACAGAACAATCCCCTCCATGTAGCCCATCAAGAAAAAGACTACGATCTGGTACAGAGTTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_05740951_05748956.mRNA True 2802 mRNA 0.47 3 5740951 5748956

Neighbor

gene id symbol gene type direction distance location
CI01000027_05735304_05738483 ZNF576.2 coding upstream 2027 5735127 ~ 5738924 (+)
CI01000027_05724339_05733809 NA coding upstream 7092 5723434 ~ 5733859 (+)
CI01000027_05719979_05720814 NA coding upstream 19617 5719903 ~ 5721334 (+)
CI01000027_05711573_05714490 NA coding upstream 26378 5711477 ~ 5714573 (+)
CI01000027_05701396_05711410 NA coding upstream 29491 5700876 ~ 5711460 (+)
CI01000027_05757143_05758496 NA coding downstream 8057 5756982 ~ 5758881 (+)
CI01000027_05781043_05784234 KLHL38B coding downstream 31650 5780606 ~ 5784415 (+)
CI01000027_05789308_05795504 FBXO32 coding downstream 40200 5789156 ~ 5796059 (+)
CI01000027_05805062_05805690 NA coding downstream 56106 5805062 ~ 5806023 (+)
CI01000027_05807381_05817636 TBC1D31 coding downstream 58073 5807029 ~ 5817665 (+)
G140858 NA non-coding upstream 59492 5619656 ~ 5681459 (+)
G140946 NA non-coding upstream 130773 5609873 ~ 5610178 (+)
G140920 NA non-coding upstream 132836 5602529 ~ 5608115 (+)
G140929 NA non-coding upstream 173298 5566567 ~ 5567653 (+)
CI01000027_05563090_05579132 NA non-coding upstream 174481 5560351 ~ 5579146 (+)
G140894 NA non-coding downstream 1275 5750231 ~ 5753375 (+)
G140950 NA non-coding downstream 72854 5821810 ~ 5822331 (+)
G140869 NA non-coding downstream 157840 5906796 ~ 5911149 (+)
G140893 NA non-coding downstream 209333 5958289 ~ 5959908 (+)
G140875 NA non-coding downstream 264733 6013689 ~ 6017411 (+)
G140862 NA other upstream 20186 5712612 ~ 5712702 (+)
CI01000027_05071693_05072917 NA other upstream 667815 5071693 ~ 5073136 (+)
CI01000027_05069310_05070638 NA other upstream 670083 5067917 ~ 5070868 (+)
CI01000027_05050310_05055447 NA other upstream 685012 5050310 ~ 5055755 (+)
G140440 NA other upstream 955291 4780417 ~ 4785660 (+)
G140924 NA other downstream 214250 5963206 ~ 5965326 (+)
G141052 NA other downstream 522411 6271367 ~ 6271600 (+)
CI01000027_06706050_06708485 NA other downstream 957421 6705983 ~ 6708513 (+)
G141082 NA other downstream 1149455 6898411 ~ 6900923 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_009926 wu:fe05a04 coding NC_007127.7 CM002900.2 25171832 ~ 25181542 (+)