XLOC_008538 (npat)


Basic Information

Item Value
gene id XLOC_008538
gene name npat
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 25528290 ~ 25542592 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017065
AGATGAGGCGAATTTCCGCGCCTTTTCGCAGTCGTGATGGATGAAAGAGCAAAACAACCTTCTGTATTTCACCTACATTATCTCATTATGGACTAAATTGCGTTTCCACTTCACATGCAGGCGATCTCGTGACTTTGGATAACATCGAAATATGTTGCTACCGTCGGACGTCGCCAGACTTGTGTTAGGCTACCTGCAACAAGAAGGTCTGAATGCCACAAGTCGAGCCTTTATTTATGAAAGCCCAAACCTGAAGGAATATGCCGAGCACAGTTCAGAGGACGGCATCATTCCTGcctgtgtattttctctttttggAAAAAACCTGATCACGATTTTAAATGAGTATGTTGCTGTTAAAACAAAGGAAACATGTCAAGAAAATCAAATCCCAGCTGTGATGACGTCATTATGGAAGAAGCTCGACTTCACGCTCAGCCAGATCAAGTCTCTGCAGAATTCTCCTGCTGTGCAACTGAATCAGCGAATGCGTACTAGGAATAGCATTCAAAACATGAGACGTCAACAGAGACCCTTGCTGGTAGTGGAGTCTCCTATCTCCGGGCACCAGCCAGTGACTCCATCAGGCCAGTGTGTTGTGGCCAGCACTGTGTCCACCCCTCAGAGCATGCTGGGACATTCAACACCAGTGTCTTACACTTCCCTGCCAACCAGACCCTCCACCCTCTGCCTTAGTCAGCCAGGAGAGTCAACGTTGCATATACTCGTTCCTGATAACAGGCTAAATCCAGGACCTTTGTCCCCAGCCCGCAGAAAATGCGACTCGCCGAGGCGGAGAGGTGGTGGTCAGTTGGGTGCCATTGGTACCAGCAAGGCCACTGTAGTGTCCAGCAGTCTCATTGTGGAAAATCAAAATGAAGAAACCGTGACAGAGAACCTATCTCAAATAGTTATAGAAAATGCCAGAGAAAAAATACTCAACGACAGATCCTTACAAGAAAAACTTgcagaaaacatcaacaaaatatTGGGGAGTGACAACAGTCCTCAGACATCAAAAGCTACCTGCAGTACGGTGGAACAAGAGCAGTCCATTGATGAAATCCTAGGCCTCCAGGGGGAAATTCATATGACAGATGATGCCATTCAAGACATACTGGCACAGACGGAGTCAGACCCTGCATTTCAGGCGCTCTTTGACCTCTTTGACTGTGGGAAAAGTAAAACTGCTGAAGGCGGTGAACAGGCTGATGGGAGTTTCAGCACTAGTACCAGTGCACAAGAGAGTGACGAGGCTGGCCATGTAGACAGTGCCTCTGAAAACGCCACTGGACAGGAGGATTCCACATCTGGGGGAGAAAGCAGTGCACAAAACATACGCAACCAGAATACATCTGAATCAAATGGCAAAAAGAATTTCCCTGGCCTTCACAAGTCTTCCTCTACAGCTCCACAGGCACATCACCTAACCAAACAAACTGGACGAGGATCCACAAACTCCAAAAGAGGGCTGATCAGGGCTAGAGTTTCACCTGGCAATAAACAATCCAGAGTTGCCACTTCAACTTCTTTATTATTGAACGATAAAGCAGACTCGCGTTCACCTGATAAAACCGTAACAAGCTCTTCTTTCACAGAAGATGGAATTGGCATGGAAATAGACGAGCCGGAAAATGAAAACTCTGACAGTGTAAATATTCAAAATCAACAGGTAGTTCTTCACGAGAGCTCACTCATCACCAAAACACTCAATAATGTGAGCAGTCAAGTCTCTGTGTCAAATAAGAGTCCTCAAACCACGTCCACTACAGAAACCTCTGATAACACATCAGTAAATGAGCCTGGCAGAGTAACAGGACAGAATGTAGAGATGGAAACCCCTTCATCTATTCAAAGTGAACCTGCATCCACACTTTACCAGCCCCAACCTGACAGAGACACTTCCATCAAAATCACTTCTCCACCTTCCTCAAATAAAACACCTGTAACTCCCTCATACACATCCAACACTATGAAGAATAATCTGCCTTTAGCAAATGCGTCACCTTCCACATCCACCACCTCAGCTTCTGGTGCACAGGTCAAAGAGCCTGACCCAAATAAAATTGTATCTCTGAAAATCATAATCAGTGATGAGGAACATGAAGTCCCTGCTGATGCGGCACTAAACCAGGCTGTTTCCAGCATCACCAGTGACCATATCCCCACCATATTCTTATCTTCTCCTGCAAAATCGCCTGCCAAGACTTTGCCTATGACCTCTTTGGTCATAACACAAGACGAAACTGCTCAGGCTGTGAGCTGTTTACAGGGGGCAGAGGGTGTCGGGTCGTTCGCAACACCTACAATGAGCTTGCAGAGTAATGCTCCACTCACACGTCTTGCAGGACAAGAAACCGGTTTCATTCAGCTGCTGCAAGCTAACCCCACCTTTGGGCCTTCAAGTGGCTATTATGTTGTAACTGATCCGGCTGGAACCGAACAGCGGTCTAATGTTGTGCTGCTTCCAAGTAATGTGCCTCAAGGGACTGTGTCGTCACTGCCGCATATGGTTGCGACGCCGCCCCGCCAGAGGACTGTGGTGTCTATGGGGCCAAATGTCTCTCAGACCTATTCGCCAGgctcCACTATTATTATATCGTCACCTGTTCAGCCTATGTTACAAAATGTGGTGCTTCCAGTGTCTGTTATGGGGCAGAATACTGGAAAACTCACAGTCCTTCCAAATCAGATGTTGACTTTGCCACGTTCAACCACTGTAAGGCAACCTACGAAAGTAATTTCGCAACATAAACTGGCACCCAAGGAAAACACTGACACTGCCAAAACTGGCACACCAGGCTCTGTTCAAGTTTCCAAAGTGCTTTCCCAGACTTCTGAACAAGAAAAGGGTGTAAATGGGTCAAGCCCCAGCCACCGGCGGATACTTTGCTTTGACGTCACGCCTGAAAACAATGCAACTGGACCAAATTCCTCACAGACAAGCATGCTCACGTCCTCTGCTGTTACATCCTCCTCGACTCAAAAAGAAATCACACCCACTAAAGCCAAACAGCCTTCAGCTTCTGACACATCCAAACGAAGAATAGAAACAACTAGACTTCCAGAAGTAAATACCAACACGGGTGCAAAAGACTCCACAAAAGTCACCATCTTTCATCAACAAAAGGAAGCTCTGAAAAGTAGTGTGACTGATAAAGAACTTAATATAATCGAAAGTACCAAGCCTTCACACAAAGAGTCTGTTGTTATATCAGAATCATCACAAAAATCACAAAGCAAAGATGCAGGGCCTTTAACATCATCTGTCCCGGGGCCAAAACAGAAACCATCAGACAACTCGAAAGAATCATCAGGTGAAAAGACTCTCTCAAACCCACCAGAAATGTCCTCAGAGAAAACATCCTTACAAGATTCTCCAGGCATCACTGCTAATAAAGAAAATGAGCTGGAGAGCAGTCAAACACTAGCACGTCCCACTGACAATCTCGTACCATCTCCAGCAAAATTTGCAACACCGTTATTAAATTCTTCCAGTAAAACTTTATGCAAAACGAGCCCTCTGACCAAACAGGCTGTTGAGATGCTGCAGGACATACAAGGTCAGACACCTGTGGCAACTCCTCCGAAAAAACAAGCAATCGGATGTCCAGATCTCCCTCTTCCAAGAACACCCGGACCGGGACGTGCACTAGAGGATCTGACAGATGGATTGAGAACGCCGTCCCGCCAGAGGCTGAGGCGAGAGGGTGAATGCACACCTAGGCATCTCCCGCTGCCCGCCACACCTGACATCCCCTCCTGCAGTCCTGCCAGTGAGACGGGCAGCGAGAACAGCATCAACATGGCCGCTCATACCCTCATGATCCTGTCTCGGGCCGCCAGAACAGGAGGCCCTCTGAAAGATAGCCTACGGCAGGAAGAGGCTGGTGCGGGGAAATCGGCCATCTCGAAAGGGAagaagcgaaagattgaagccaGCCCTACCGCTAAGAAAGAGCTACAGCTTTCCAGATCCTCCAGCGGTAAAAAGAAATCTAAGAAACAAAAGAAGCTGCTGGACTCCTTCCCTGATGACCTGGATGTGGACAAATTCCTGTCCTCCCTGCATTATGATGAGTGAAGAAGCTGAGGACGAGCTGCACTGCGAAGTTCaccaccattttagggacaagaCAAGCCATGTGTGCTATGAGAGCCACAAAAACAATTATTCTGAAGAGCTGCTTACTGTTTTACATCCAGAATGTGAGATATTGTACATAGACATTGTATTAGACTAGCAATTAAATTCATACTTTAAAGATATTCAAATACAGCCCCAGGCTGATTCAGCACTCTTGAAAAgtggaaataatttaaaaataaaacggtATTTTAACTACA
>TCONS_00017066
GCCTTTTCGCAGTCGTGATGGATGAAAGAGCAAAACAACCTTCTGTATTTCACCTACATTATCTCATTATGGACTAAATTGCGTTTCCACTTCACATGCAGGCGATCTCGTGACTTTGGATAACATCGAAATATGTTGCTACCGTCGGACGTCGCCAGACTTGTGTTAGGCTACCTGCAACAAGAAGGTCTGAATGCCACAAGTCGAGCCTTTATTTATGAAAGCCCAAACCTGAAGGAATATGCCGAGCACAGTTCAGAGGACGGCATCATTCCTGcctgtgtattttctctttttggAAAAAACCTGATCACGATTTTAAATGAGTATGTTGCTGTTAAAACAAAGGGTGAgtgattttgttttatgtgtaattTAAGTATTCGACaggtgaataaactaaattggccatagtctaAGTGTGGTCaagtaagagtgtatgggt

Function

symbol description
npat Predicted to enable transcription coregulator activity. Predicted to be involved in regulation of transcription involved in G1/S transition of mitotic cell cycle. Predicted to be active in nucleus. Orthologous to human NPAT (nuclear protein, coactivator of histone transcription).

GO:

id name namespace
GO:0000083 regulation of transcription involved in G1/S transition of mitotic cell cycle biological_process
GO:0005634 nucleus cellular_component
GO:0003712 transcription coregulator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050506-54 Predicted to enable transcription coregulator activity. Predicted to be involved in regulation of transcription involved in G1/S transition of mitotic cell cycle. Predicted to be active in nucleus. Orthologous to human NPAT (nuclear protein, coactivator of histone transcription).

Ensembl:

ensembl_id ENSDARG00000055548

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017065 False 4347 mRNA 0.46 17 25528290 25542592
TCONS_00017066 True 445 lncRNA 0.41 3 25528309 25529425

Neighbor

gene id symbol gene type direction distance location
XLOC_008537 zgc:152863 coding upstream 28772 25489406 ~ 25499518 (+)
XLOC_008535 pak4 coding upstream 42280 25452092 ~ 25486010 (+)
XLOC_008536 CU856359.1 coding upstream 58445 25469729 ~ 25469845 (+)
XLOC_008534 aifm4 coding upstream 79664 25438714 ~ 25448626 (+)
XLOC_008533 NA coding upstream 128716 25395901 ~ 25399574 (+)
XLOC_008539 NA coding downstream 26345 25568937 ~ 25570599 (+)
XLOC_008540 tsr1 coding downstream 92734 25635326 ~ 25656331 (+)
XLOC_008541 CT027805.2 coding downstream 124995 25667587 ~ 25667701 (+)
XLOC_008542 hic1 coding downstream 138452 25681044 ~ 25690267 (+)
XLOC_008543 NA coding downstream 353873 25896465 ~ 25902650 (+)
XLOC_008463 BX663520.1 misc upstream 4276008 21252191 ~ 21252282 (+)
XLOC_008532 NA non-coding upstream 150796 25370567 ~ 25377494 (+)
XLOC_008531 NA non-coding upstream 318448 25208392 ~ 25209842 (+)
XLOC_008529 NA non-coding upstream 432992 25094836 ~ 25095298 (+)
XLOC_008544 CR848822.1 non-coding downstream 563723 26106315 ~ 26106433 (+)
XLOC_008546 CABZ01021926.1 non-coding downstream 897521 26440113 ~ 26440227 (+)

Expression


Co-expression Network