XLOC_008540 (tsr1)


Basic Information

Item Value
gene id XLOC_008540
gene name tsr1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 25635326 ~ 25656331 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017067
AAGTTTACATGTGCGGCATGACAGAAAATGGCTGCAGGAGGAGAGCAACAGCAGCAGACACACAGACCTGGAGtttataaacagaaaaacaagcagCACAAGCATGGAAAACATCGAACTAAAGGCGAGATCGGCCGGGAGAACAAGGGTAGAGTTGCTATTGTGGCCCTCACCAAGAAACAGAGGAGAGAGATGAGGAAAAAGGACCGCAGGAACACGGCTAACCAGCTGCGTCGCAACAAAAAAGACTTGGTGCTGACGGAGAAGCGTAAACTGGGCAGCCGAGATGGACCTCCTCATCTGGTGGCAGTCATAGCACTTCATTCAAGAGTGGATGCTGGAGCTGTCACAAAGATGTTGAGAGGGGAAGGAGTTGGTGGAGTGGTGCGTGAAGATCAAGGAGTCACTGGGGCCAAGGACAGCTTTGGTCTTGTTCTTCCTCGCTTTAAGCAGAGATTCACTTTCTACAGGCCAGACACGGatGACTTGCATTCACTCCTGGATGTGGCAAAGATTGCAGACAGTTTGGTGTTTGTGCTGGATTCAAATGAAGGTTGGGATAGCTATGGAGAATACTGCCTGTCCTGTCTCTTTGCCCAGGGATTACCAAGTCATGCACTGGTATGTCAGGGAGTGGCTGATCTAGCAGTGAAGAAGCGCACTGAGTCCCGACGAGCTCTCTCTCGTTTGGTAGAGTCTCGTTTCCCAGAAGCACGTCTCTTCCCTGTGGACTGTGATCAGGATGCCGTTTTGCTTCTACGGCACTTGTCAGCGCAAAAACAGAGGCGTCTGGGGTTCCGCTCTCGCCGCTCACACCTGCTGGCGCAGAGAGCCACATATGTCCCCAATAACAGCCAGAGCGGGACAGGGTTGGGGACTCTCTGTGTGTCAGGATATATTCGAGGCTGTCCTCTGCAAGTCAACCGGCTGGTGCACATCACAGGTCATGGAGACTTTCAGCTCAGCCAGATCGATGCTCCAGCAGACCCTCTGCCAATAGTTCTGTCAACATCTCGACCAGCAAAACCAGGACGAGATGTGGAGATGATGGACGGTGGAGATGGAGAGGTGAATGGGGATGTTCGGGTGTTGATGAAAGCAGACCCTGCTCAGAGAGAGAGCCTACAGGCAGAGGCAGAAGTCGACCCCATGGAGGGAGAGCAGACGTGGCCCACAGAAGCAGAGCTGGAGGAGGCTGAAGAGGCCAGTAAGAAGAGGAGAGTGATGAAGGTACCGAAGGGGACATCCGACTATCAGGCCACATGGATTATTGATGAAAATGCTGAGGAGGAAGGGGATGGTGGTGATGAtggggatgatgatgatgacagctgtgatgatgatgatgatgatgatgatgagatgATGGACGATGAAATGGATGGAGATAATGAATCTCAGCTGTGGTTCGCTACATGTTCTTCAACAGAGATGATATTCTGTGGTTTAAGCCAGTAGAACTACGTACAAAGTGGGGCCGACGAGGACACATCAAGGAAGCTTTGgGCACTCATGGCCACATGAAGTGTGTGTTCGACAGCCAGCTGCGCTCTCAGGACACTGTGCTGATGAACCTCTATAAGAGGGTTTATCCTCACTGGACGTACGACCCCTACGTTCCTGTCCCTCTGCCCTGGGTCAAGAGAGAAGAGCCGCCAGCGCTGGCTGACATAGACATGGAGTAAAGGCAGGAAGTCATGAACTGAATGCAATAGAAACACAACATGACACCAACTGCTTGTGTCACAGGATATACACACATTAATTCTCAATCTCTATACCATTAAATGTCTACGTTTAA
>TCONS_00017068
AAGTTTACATGTGCGGCATGACAGAAAATGGCTGCAGGAGGAGAGCAACAGCAGCAGACACACAGACCTGGAGtttataaacagaaaaacaagcagCACAAGCATGGAAAACATCGAACTAAAGGCGAGATCGGCCGGGAGAACAAGGGTAGAGTTGCTATTGTGGCCCTCACCAAGAAACAGAGGAGAGAGATGAGGAAAAAGGACCGCAGGAACACGGCTAACCAGCTGCGTCGCAACAAAAAAGACTTGGTGCTGACGGAGAAGCGTAAACTGGGCAGCCGAGATGGACCTCCTCATCTGGTGGCAGTCATAGCACTTCATTCAAGAGTGGATGCTGGAGCTGTCACAAAGATGTTGAGAGGGGAAGGAGTTGGTGGAGTGGTGCGTGAAGATCAAGGAGTCACTGGGGCCAAGGACAGCTTTGGTCTTGTTCTTCCTCGCTTTAAGCAGAGATTCACTTTCTACAGGCCAGACACGGatGACTTGCATTCACTCCTGGATGTGGCAAAGATTGCAGACAGTTTGGTGTTTGTGCTGGATTCAAATGAAGGTTGGGATAGCTATGGAGAATACTGCCTGTCCTGTCTCTTTGCCCAGGGATTACCAAGTCATGCACTGGTATGTCAGGGAGTGGCTGATCTAGCAGTGAAGAAGCGCACTGAGTCCCGACGAGCTCTCTCTCGTTTGGTAGAGTCTCGTTTCCCAGAAGCACGTCTCTTCCCTGTGGACTGTGATCAGGATGCCGTTTTGCTTCTACGGCACTTGTCAGCGCAAAAACAGAGGCGTCTGGGGTTCCGCTCTCGCCGCTCACACCTGCTGGCGCAGAGAGCCACATATGTCCCCAATAACAGCCAGAGCGGGACAGGGTTGGGGACTCTCTGTGTGTCAGGATATATTCGAGGCTGTCCTCTGCAAGTCAACCGGCTGGTGCACATCACAGGTCATGGAGACTTTCAGCTCAGCCAGATCGATGCTCCAGCAGACCCTCTGCCAATAGTTCTGTCAACATCTCGACCAGCAAAACCAGGACGAGATGTGGAGATGATGGACGGTGGAGATGGAGAGGTGAATGGGGATGTTCGGGTGTTGATGAAAGCAGACCCTGCTCAGAGAGAGAGCCTACAGGCAGAGGCAGAAGTCGACCCCATGGAGGGAGAGCAGACGTGGCCCACAGAAGCAGAGCTGGAGGAGGCTGAAGAGGCCAGTAAGAAGAGGAGAGTGATGAAGGTACCGAAGGGGACATCCGACTATCAGGCCACATGGATTATTGATGAAAATGCTGAGGAGGAAGGGGATGGTGGTGATGAtggggatgatgatgatgacagctgtgatgatgatgatgatgatgatgatgagatgATGGACGATGAAATGGATGAAGGAGATGATGACgatgaggaagaagaagaagaggagatcAGTTCCACCGGACGCACTGGAGCCGATCAGAAGTATGACGAAGGCATGAACGAAAGCGAGGAGGGAGAAGGGTTGAGGAGATACAGAGAGGCACGTGCCAATGAGATGTTCCCTGATGAAGTTGACACTCCCCTTGATGTCCCATCCAGGACACGGTTTCAGAGGTACAGAGGTCTGAAGAGTTTTCGCTCCTCTCCATGGGACCCGCTAGAGAATCTGCCTTCAAACTACTCGCGCATTTTCCAGTTCCAAAACTTTGAACGCATGCGGCGCCGAATACTAGCAGATGCTGCTAATGAGGAAGACGGAGCAATGGTGGGCTGGTATGTGACACTTCATATAGTTGACGTTCCTCCCTCAGTTATGGAGAGTTTTCAGACTGGTAAACCATTAGTTCTGGTGTCCCTGCTGCCACATGAACAGAAGATGTCAGTTATGAATGTGTTGGTGCGGCAGCATCCCAGTAACACCGAACCCATCAAGTCTAAAGAAGAgctggtgtttcagtgtggattCAGACGCTTCAGAGCTTCAGCCATCTTCTCTCAGCACACTACTGGTGATAAACACAAGCTGGAGCGGTTTCTTCGCCCTGATGCCCCTACAATCATGTCTTTCTATGCCCCTATTACCTTCCCCACCGCTGGAGTCTTGGTCTTCAAACAAAGAGACAATGGTATGCAGGATCTGGTGGCCACCGGTAGTCTTCTGAGCTGTGATCCTCGGCGTGTGGTGTTGAAGAGGATTGTGTTGAGTGGACACCCTTTCAAAATCAATCGGCGCTCAGCTGTGGTTCGCTACATGTTCTTCAACAGAGATGATATTCTGTGGTTTAAGCCAGTAGAACTACGTACAAAGTGGGGCCGACGAGGACACATCAAGGAAGCTTTGgGCACTCATGGCCACATGAAGTGTGTGTTCGACAGCCAGCTGCGCTCTCAGGACACTGTGCTGATGAACCTCTATAAGAGGGTTTATCCTCACTGGACGTACGACCCCTACGTTCCTGTCCCTCTGCCCTGGGTCAAGAGAGAAGAGCCGCCAGCGCTGGCTGACATAGACATGGAGTAAAGGCAGGAAGTCATGAACTGAATGCAATAGAAACACAACATGACACCAACTGCTTGTGTCACAGGATATACACACATTAATTCTCAATCTCTATACCATTAAATGTCTACGTTTAATTCC
>TCONS_00017069
AGTTTACATGTGCGGCATGACAGAAAATGGCTGCAGGAGGAGAGCAACAGCAGCAGACACACAGACCTGGAGtttataaacagaaaaacaagcagCACAAGCATGGAAAACATCGAACTAAAGGCGAGATCGGCCGGGAGAACAAGGGTAGAGTTGCTATTGTGGCCCTCACCAAGAAACAGAGGAGAGAGATGAGGAAAAAGGACCGCAGGAACACGGCTAACCAGCTGCGTCGCAACAAAAAAGACTTGGTGCTGACGGAGAAGCGTAAACTGGGCAGCCGAGATGGACCTCCTCATCTGGTGGCAGTCATAGCACTTCATTCAAGAGTGGATGCTGGAGCTGTCACAAAGATGTTGAGAGGGGAAGGAGTTGGTGGAGTGGTGCGTGAAGATCAAGGAGTCACTGGGGCCAAGGACAGCTTTGGTCTTGTTCTTCCTCGCTTTAAGCAGAGATTCACTTTCTACAGGCCAGACACGGatGACTTGCATTCACTCCTGGATGTGGCAAAGATTGCAGACAGTTTGGTGTTTGTGCTGGATTCAAATGAAGGTTGGGATAGCTATGGAGAATACTGCCTGTCCTGTCTCTTTGCCCAGGGATTACCAAGTCATGCACTGGTATGTCAGGGAGTGGCTGATCTAGCAGTGAAGAAGCGCACTGAGTCCCGACGAGCTCTCTCTCGTTTGGTAGAGTCTCGTTTCCCAGAAGCACGTCTCTTCCCTGTGGACTGTGATCAGGATGCCGTTTTGCTTCTACGGCACTTGTCAGCGCAAAAACAGAGGCGTCTGGGGTTCCGCTCTCGCCGCTCACACCTGCTGGCGCAGAGAGCCACATATGTCCCCAATAACAGCCAGAGCGGGACAGGGTTGGGGACTCTCTGTGTGTCAGGATATATTCGAGGCTGTCCTCTGCAAGTCAACCGGCTGGTGCACATCACAGGTCATGGAGACTTTCAGCTCAGCCAGATCGATGCTCCAGCAGACCCTCTGCCAATAGTTCTGTCAACATCTCGACCAGCAAAACCAGGACGAGATGTGGAGATGATGGACGGTGGAGATGGAGAGGTGAATGGGGATGTTCGGGTGTTGATGAAAGCAGACCCTGCTCAGAGAGAGAGCCTACAGGCAGAGGCAGAAGTCGACCCCATGGAGGGAGAGCAGACGTGGCCCACAGAAGCAGAGCTGGAGGAGGCTGAAGAGGCCAGTAAGAAGAGGAGAGTGATGAAGGTACCGAAGGGGACATCCGACTATCAGGCCACATGGATTATTGATGAAAATGCTGAGGAGGAAGGGGATGGTGGTGATGAtggggatgatgatgatgacagctgtgatgatgatgatgatgatgatgatgagatgATGGACGATGAAATGGATGGAGATAATGAATCTCAGGATGCCGGCTCTGAATGTGCTTCTGAAGGAGATGATGACgatgaggaagaagaagaagaggagatcAGTTCCACCGGACGCACTGGAGCCGATCAGAAGTATGACGAAGGCATGAACGAAAGCGAGGAGGGAGAAGGGTTGAGGAGATACAGAGAGGCACGTGCCAATGAGATGTTCCCTGATGAAGTTGACACTCCCCTTGATGTCCCATCCAGGACACGGTTTCAGAGGTACAGAGGTCTGAAGAGTTTTCGCTCCTCTCCATGGGACCCGCTAGAGAATCTGCCTTCAAACTACTCGCGCATTTTCCAGTTCCAAAACTTTGAACGCATGCGGCGCCGAATACTAGCAGATGCTGCTAATGAGGAAGACGGAGCAATGGTGGGCTGGTATGTGACACTTCATATAGTTGACGTTCCTCCCTCAGTTATGGAGAGTTTTCAGACTGGTAAACCATTAGTTCTGGTGTCCCTGCTGCCACATGAACAGAAGATGTCAGTTATGAATGTGTTGGTGCGGCAGCATCCCAGTAACACCGAACCCATCAAGTCTAAAGAAGAgctggtgtttcagtgtggattCAGACGCTTCAGAGCTTCAGCCATCTTCTCTCAGCACACTACTGGTGATAAACACAAGCTGGAGCGGTTTCTTCGCCCTGATGCCCCTACAATCATGTCTTTCTATGCCCCTATTACCTTCCCCACCGCTGGAGTCTTGGTCTTCAAACAAAGAGACAATGGTATGCAGGATCTGGTGGCCACCGGTAGTCTTCTGAGCTGTGATCCTCGGCGTGTGGTGTTGAAGAGGATTGTGTTGAGTGGACACCCTTTCAAAATCAATCGGCGCTCAGCTGTGGTTCGCTACATGTTCTTCAACAGAGATGATATTCTGTGGTTTAAGCCAGTAGAACTACGTACAAAGTGGGGCCGACGAGGACACATCAAGGAAGCTTTGgGCACTCATGGCCACATGAAGTGTGTGTTCGACAGCCAGCTGCGCTCTCAGGACACTGTGCTGATGAACCTCTATAAGAGGGTTTATCCTCACTGGACGTACGACCCCTACGTTCCTGTCCCTCTGCCCTGGGTCAAGAGAGAAGAGCCGCCAGCGCTGGCTGACATAGACATGGAGTAAAGGCAGGAAGTCATGAACTGAATGCAATAGAAACACAACATGACACCAACTGCTTGTGTCACAGGATATACACACATTAATTCTCAATCTCTATACCATTAAATGTCTACGTTTAA
>TCONS_00017070
GCATGACAGAAAATGGCTGCAGGAGGAGAGCAACAGCAGCAGACACACAGACCTGGAGtttataaacagaaaaacaagcagCACAAGCATGGAAAACATCGAACTAAAGGCGAGATCGGCCGGGAGAACAAGGGTAGAGTTGCTATTGTGGCCCTCACCAAGAAACAGAGGAGAGAGATGAGGAAAAAGGACCGCAGGAACACGGCTAACCAGCTGCGTCGCAACAAAAAAGACTTGGTGCTGACGGAGAAGCGTAAACTGGGCAGCCGAGATGGACCTCCTCATCTGGTGGCAGTCATAGCACTTCATTCAAGAGTGGATGCTGGAGCTGTCACAAAGATGTTGAGAGGGGAAGGAGTTGGTGGAGTGGTGCGTGAAGATCAAGGAGTCACTGGGGCCAAGGACAGCTTTGGTCTTGTTCTTCCTCGCTTTAAGCAGAGATTCACTTTCTACAGGCCAGACACGGatGACTTGCATTCACTCCTGGATGTGGCAAAGATTGCAGACAGTTTGGTGTTTGTGCTGGATTCAAATGAAGGTTGGGATAGCTATGGAGAATACTGCCTGTCCTGTCTCTTTGCCCAGGGATTACCAAGTCATGCACTGGTATGTCAGGGAGTGGCTGATCTAGCAGTGAAGAAGCGCACTGAGTCCCGACGAGCTCTCTCTCGTTTGGTAGAGTCTCGTTTCCCAGAAGCACGTCTCTTCCCTGTGGACTGTGATCAGGATGCCGTTTTGCTTCTACGGCACTTGTCAGCGCAAAAACAGAGGCGTCTGGGGTTCCGCTCTCGCCGCTCACACCTGCTGGCGCAGAGAGCCACATATGTCCCCAATAACAGCCAGAGCGGGACAGGGTTGGGGACTCTCTGTGTGTCAGGATATATTCGAGGCTGTCCTCTGCAAGTCAACCGGCTGGTGATAAACACAAGCTGGAGCGGTTTCTTCGCCCTGATGCCCCTACAATCATGTCTTTCTATGCCCCTATTACCTTCCCCACCGCTGGAGTCTTGGTCTTCAAACAAAGAGACAATGGTATGCAGGATCTGGTGGCCACCGGTAGTCTTCTGAGCTGTGATCCTCGGCGTGTGGTGTTGAAGAGGATTGTGTTGAGTGGACACCCTTTCAAAATCAATCGGCGCTCAGCTGTGGTTCGCTACATGTTCTTCAACAGAGATGATATTCTGTGGTTTAAGCCAGTAGAACTACGTACAAAGTGGGGCCGACGAGGACACATCAAGGAAGCTTTGgGCACTCATGGCCACATGAAGTGTGTGTTCGACAGCCAGCTGCGCTCTCAGGACACTGTGCTGATGAACCTCTATAAGAGGGTTTATCCTCACTGGACGTACGACCCCTACGTTCCTGTCCCTCTGCCCTGGGTCAAGAGAGAAGAGCCGCCAGCGCTGGCTGACATAGACATGGAGTAAAGGCAGGAAGTCATGAACTGAATGCAATAGAAACACAACATGACACCAACTGCTTGTGTCACAGGATATACACACATTAATTCTCAATCTCTATACCATTAAATGTCTACGTTTAATTCC

Function

symbol description
tsr1 Predicted to enable GTP binding activity; GTPase activity; and U3 snoRNA binding activity. Predicted to be involved in endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) and maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA). Predicted to act upstream of or within ribosome biogenesis. Predicted to be located in nucleolus. Predicted to be part of preribosome, small subunit precursor. Orthologous to human TSR1 (TSR1 ribosome maturation factor).

GO:

id name namespace
GO:0042254 ribosome biogenesis biological_process
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biological_process
GO:0000479 endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biological_process
GO:0030688 preribosome, small subunit precursor cellular_component
GO:0005634 nucleus cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0034511 U3 snoRNA binding molecular_function

KEGG:

id description
ko03009 Ribosome biogenesis

ZFIN:

id description
ZDB-GENE-030131-3762 Predicted to enable GTP binding activity; GTPase activity; and U3 snoRNA binding activity. Predicted to be involved in endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) and maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA). Predicted to act upstream of or within ribosome biogenesis. Predicted to be located in nucleolus. Predicted to be part of preribosome, small subunit precursor. Orthologous to human TSR1 (TSR1 ribosome maturation factor).

Ensembl:

ensembl_id ENSDARG00000007744

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017067 False 1801 mRNA 0.51 10 25635326 25656327
TCONS_00017068 False 2616 mRNA 0.51 15 25635326 25656331
TCONS_00017069 False 2653 mRNA 0.51 15 25635327 25656327
TCONS_00017070 True 1547 nonsense_mediated_decay 0.51 9 25635341 25656331

Neighbor

gene id symbol gene type direction distance location
XLOC_008539 NA coding upstream 64727 25568937 ~ 25570599 (+)
XLOC_008538 npat coding upstream 92734 25528290 ~ 25542592 (+)
XLOC_008537 zgc:152863 coding upstream 135808 25489406 ~ 25499518 (+)
XLOC_008535 pak4 coding upstream 149316 25452092 ~ 25486010 (+)
XLOC_008536 CU856359.1 coding upstream 165481 25469729 ~ 25469845 (+)
XLOC_008541 CT027805.2 coding downstream 11256 25667587 ~ 25667701 (+)
XLOC_008542 hic1 coding downstream 24713 25681044 ~ 25690267 (+)
XLOC_008543 NA coding downstream 240134 25896465 ~ 25902650 (+)
XLOC_008544 CR848822.1 coding downstream 449984 26106315 ~ 26106433 (+)
XLOC_008545 rtn4rl1b coding downstream 743207 26399538 ~ 26402301 (+)
XLOC_008463 BX663520.1 misc upstream 4383044 21252191 ~ 21252282 (+)
XLOC_008533 NA non-coding upstream 235752 25395901 ~ 25399574 (+)
XLOC_008532 NA non-coding upstream 257832 25370567 ~ 25377494 (+)
XLOC_008531 NA non-coding upstream 425484 25208392 ~ 25209842 (+)
XLOC_008546 CABZ01021926.1 non-coding downstream 783782 26440113 ~ 26440227 (+)
XLOC_008549 NA non-coding downstream 1019654 26675985 ~ 26680699 (+)

Expression


Co-expression Network