CI01000027_06504915_06514535


Basic Information

Item Value
gene id CI01000027_06504915_06514535
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 6504311 ~ 6515150 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_06504915_06514535.mRNA
GTTTAAAAGGCTTTGTAATATGACTGTCGATACAGACATTGTAAAATGTAATAAACTGTGATGCACACATGGCACAGGACGCCACCCACACTAGAATGCAAAGTGACCTTTAAATAACCTTTTTATGGGCTGCGATTCATGAAACACACAAACACACACAGAGAAATGCTGTACCACATGACAAGAGTCATGATGTCAACATCTAATCCAGAGGGACTGACAAAATATACACAAATTAGTTTCATAATAGAGGGAAACAAGGAAATTCCTGTACACACAAGCCATCTTTTATATGCTGAAATATTTGTAATGTTTTAAAATATTACTCAGGACTTCTAGTTAAATAGTATTTTTTGCTGATAATCATTGACCGAAGTTTAACATTAAAGAAGCAAATGGTTCTATTTTCCGACTGGCCAAATGGTAATTATGTGTCTCTTAAATATTGTTCAGTTTGCACAGCAGGAGCCATCATGTCAGGGATAAACAAATGCCACTGCTATAAATTATAATTACGTTTGTAGTAGCTATAGTAAAGGTGATTTTAATTAAAGGCAATGTTGTTTTTTAATATCTTTTCCATCAGGTTTTGTTGACCGGGACGATGAGAGGTGCACATTTGCTACACTTGACCCTTCTCGTCAGCATTGCTCATGGGATAGGTCTGGAGGACAAAAAGGGGCCATTAGAAAATAAAGTTTTAGATGTGCCAGAGGCTACACCTGTACCTTATCCCATTTACCAGTTTACATCTGCATCGGAAGATGTCTCTTCATATCATATTGAAGCACATTCAGCAGATGGTGAAACTGTTGATGGGCCTTACTCGCTGATTTTGCAAGTTGTGGATGTCAACAACAATGCCCCTGTCTTTATAGAGAGTCAGTACAGTGGCAGTGTTAGAGAGCATTCACCTGCAGGATTTGTATTCATGCAGGTGTCCGCATCAGATGCAGATGATCCCAACACAGTAAATGCTCAACTGAAATACAGCATTGTGAACCAAATCCCCAAACCCAGAGACACGTTGTACTTTGACATAAACCCAGACAATGGAGAGATCTTTATAACAGACGAAGGAGCAGAGTTTCTGAGTGCCAGGCCCACTGTAACATACAGCCGTGGTGAGGTCCGTGGCAGTCCTGATGTCCTGAGGAAGAAGTTTGAGGACTACTGTATTCCAAAGAACAACATACCACTAGAGAGCAACCCCTTTTACACATGCGTTGAGCGTGTTGAAAGAAGACAAATTAATCTTCACCTGGATCCAGACTATGTACTGAGTGTTCGTGTGGAAGATATGGGAGATCCAAACGCTTTGAGCAACACGGCACGAGTCAGCATAGATATCATTCAAAACCTCTGGTTCATCCCTGGACCAATCACCATTAAAGAAAATTTAGATGAGGAATACCCTATGTATCTTACCACAGTGCGCAGCAATGATCCCACCGCACTATACAGGCTGGTACAGAAAGAAAAACTTTCCTTCCCCTTCACCATCAATCAAGATGGAGAGATCCATGTTACAGCACCTCTGGACAGAGAAGAGAAAAATATGTACATATTGGTGGCCATGGCAGAAGATGAACAGGGCATTGAGCTGGAAAAACCCTTGGAGATTTTTGTCCGGGTGGACGATGTGAATGATAACCCTCCTGTGTGTGATGAAGCTGTGTTTGAAGTGCAGGAAAATGAGCCCATAGGTAGTCTGATTGGTGTTCTGCCTGCTCATGATAGTGATGAGGAGAACACACTGAACTCATTACTAACCTACACACTCCTGAGCCAGACGCCTACCGAGCCATCTGAGAAAATGTTCACCATCGACCAAGTAAATGGTGAAATCAAAGTAGCCAATCAAAACTTTCAAAGGAAAATTGTGTCTCAGTATGAACTCACCTTCAGAGTGACTGATCAAGTTTACACAACGGAATGTAAAGCAATCATCAAGGTCATCGACATCAATAATGAAATCCCTGTCTTCGAGAAAAAAGATTATGGGACCTACAGTGTTCCTGAACTGGCTGAAGTGGGCACCACTTTACTCACCATCAAAGCCACGGATGCAGATGACCCAGGAACAGGAAGCTCTAGGGTGGAGTATCACATCTCTTCTGGAGATCCACATAACCTCTTCACTATTGAGGTTGATGAATCCACTGGAGAGGGCAGAGTCTACATCGCTCGGCCACTGGATTACGAACTCCAGAGCGTCTACAACCTTCAGATTGATGCCCGTAATCCTGAGCCCCTGGTCAAAGGAGTGGAATATAATGAAAATTCCACAGCAGTTGTTGTCATTCAGCTAGTGGATGTGGACGAGCCCCCAGAATTTGAAGTGGACACTCTTAATGTCAATGTCCCAGAAAACATCACGATTGGAACCGTATTAATGAAAGCTGAAGCCAAGGATCCAGAGGGAAAGACTATCAAGTTAAAGATGGAAGGAGATGAACATAATTGGTTGGAGCTGGACGCTGATACCGGTGAGCTGAAGACGAAAGCTGCTCTGGACAGAGAGACGGTGGAGCATATCACTCTCACAGTCATCGCTTATGAGACAGAGGGAGACAAGCAGGAGGCTGAGATGAAGGTGAATATTCACCTGCTGGATGTGAACGACAACTACCCTAAACTTCAGTGGACACGGAACTACATCTGCACGCAAGAAATGAACCCTTTGACACTCACTGCTGTAGATAAGGATGCCGACCCCTATGGAGAGCCTTTCACCTTCACCATTAACCGCAAGTCAGCAAACTTTGAGCTCAAACCTGTGGATGGAACCTCAGTGAAGCTGATTCTGAAGAAAAAGCCCACAAGTGATCAGAACATCATTGTTCCAATCAACATCAAAGACAATGCTGGGATGGGTATAACTCAAAAGTTTGATGTGCGTGTATGTAACTGCACTAAATTGGGCTACTGTTACATGGAGCCAGAAACTCACAGCTGGAAGCTTGGCATGAGCAGCACCATTGGCATACTGGCAGGAATATTCGGCTTCATCATTCTGTTCCTGGCCATTGTTATTTACCGAATCAAGAAGAAGGATCAGAGGAGAGCAGCAGCTGGTGGAGAGACTGAGAGTAAAGCAATGCTCTAGAGTCGAGATAAAATGTCAACACACACACACATTTATTTTGTAAAGTGGTTTATTATCATTACATAGACATGTTCAAGAATTGCATCATCTGACAGTAACTTATTTGTCATGTGACCTGGCAGTTTTATTAAATATTTTATATTTAAAAGCTCTAAATATCTGACCTAAATATCCCCCTAGTGTTTATATTATAATATATATATATATATATATCCCCCTAGTGTTTAAAAGGAACACAAAACCAGGTGTATTCTGGTCATTTTAAACATTTGTGGTATATTTTTGGTACAGTAGAGTACTTTGAGACATTGAGTATATGTTGTCATATTTCATATGGATTAAACCTATAAAAAAAAACTAAATCTTATATTTATTCCCCATTATCCAAGAATCAGTGAAAATGTGTTAAAATCTTTCCATGGGATAGATCTTTTTGTTTTTGACTTTTCTTCTAAAGCATGTCTTGTGCAGGTCAATGGCCAGGTTCTATTAAATGCCCTTCAGATCTCTAGTGTAATTCTTTACTGAAGAAGGTAATTATTGAAGAAGGTATAAAATTCACAGAATGACAACATTGCTTATTTGACTGAAAAACTGAAATTGTTCATTCTGTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_06504915_06514535.mRNA True 3724 mRNA 0.41 18 6504311 6515150

Neighbor

gene id symbol gene type direction distance location
CI01000027_06495825_06497691 GEM coding upstream 6233 6495351 ~ 6498078 (+)
CI01000027_06477695_06489968 RAD54B coding upstream 14278 6477695 ~ 6490033 (+)
CI01000027_06470650_06470837 NA coding upstream 33323 6470650 ~ 6470988 (+)
CI01000027_06458587_06470747 KIAA1429 coding upstream 33564 6458587 ~ 6470747 (+)
CI01000027_06410011_06426230 EPB41L4B coding upstream 77375 6410011 ~ 6426936 (+)
CI01000027_06604099_06652019 GALNT1 coding downstream 88949 6604099 ~ 6652188 (+)
CI01000027_06706050_06708485 NA coding downstream 190833 6705983 ~ 6708513 (+)
CI01000027_06785671_06803146 NR4A3 coding downstream 270521 6785671 ~ 6803213 (+)
CI01000027_06811768_06817052 NA coding downstream 295944 6811094 ~ 6817163 (+)
CI01000027_06859191_06877582 NA coding downstream 344041 6859191 ~ 6877625 (+)
G141138 NA non-coding upstream 10911 6493154 ~ 6493400 (+)
G141097 NA non-coding upstream 47945 6453119 ~ 6456366 (+)
G141112 NA non-coding upstream 52782 6451137 ~ 6451529 (+)
G141108 NA non-coding upstream 57453 6446582 ~ 6446858 (+)
G141113 NA non-coding upstream 58763 6444294 ~ 6445548 (+)
G141145 NA non-coding downstream 15442 6530592 ~ 6530818 (+)
G141146 NA non-coding downstream 18934 6534084 ~ 6534323 (+)
G141147 NA non-coding downstream 21227 6536377 ~ 6536592 (+)
G141106 NA non-coding downstream 148865 6664015 ~ 6666990 (+)
G141052 NA other upstream 232711 6271367 ~ 6271600 (+)
G140924 NA other upstream 538985 5963206 ~ 5965326 (+)
CI01000027_05757143_05758496 NA other upstream 745441 5756982 ~ 5758881 (+)
G140862 NA other upstream 783546 5712612 ~ 5712702 (+)
CI01000027_05071693_05072917 NA other upstream 1431175 5071693 ~ 5073136 (+)
G141082 NA other downstream 383261 6898411 ~ 6900923 (+)
CI01000027_06951132_06956691 GLIPR2, GLIPR2L other downstream 437796 6951132 ~ 6957767 (+)
CI01000027_07469157_07471720 NA other downstream 953594 7468964 ~ 7471999 (+)
CI01000027_07947743_07951397 NA other downstream 1435553 7947657 ~ 7951942 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_009969 cdh17 coding NC_007127.7 CM002900.2 26774182 ~ 26802798 (+)