XLOC_008541 (CT027805.2)


Basic Information

Item Value
gene id XLOC_008541
gene name CT027805.2
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 25667587 ~ 25667701 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017071
GCTGGCAGctggctctctgcaactctcacatggtcgcccacggAAGCCAAGCAGAGCTGCGCCCGGTatgtacctggataggagaccacatggaaaagctaggttgctgccggaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000116924

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017071 True 115 rRNA 0.59 1 25667587 25667701

Neighbor

gene id symbol gene type direction distance location
XLOC_008540 tsr1 coding upstream 11256 25635326 ~ 25656331 (+)
XLOC_008539 NA coding upstream 96988 25568937 ~ 25570599 (+)
XLOC_008538 npat coding upstream 124995 25528290 ~ 25542592 (+)
XLOC_008537 zgc:152863 coding upstream 168069 25489406 ~ 25499518 (+)
XLOC_008535 pak4 coding upstream 181577 25452092 ~ 25486010 (+)
XLOC_008542 hic1 coding downstream 13343 25681044 ~ 25690267 (+)
XLOC_008543 NA coding downstream 228764 25896465 ~ 25902650 (+)
XLOC_008544 CR848822.1 coding downstream 438614 26106315 ~ 26106433 (+)
XLOC_008545 rtn4rl1b coding downstream 731837 26399538 ~ 26402301 (+)
XLOC_008546 CABZ01021926.1 coding downstream 772412 26440113 ~ 26440227 (+)
XLOC_008463 BX663520.1 misc upstream 4415305 21252191 ~ 21252282 (+)
XLOC_008536 CU856359.1 non-coding upstream 197742 25469729 ~ 25469845 (+)
XLOC_008533 NA non-coding upstream 268013 25395901 ~ 25399574 (+)
XLOC_008532 NA non-coding upstream 290093 25370567 ~ 25377494 (+)
XLOC_008531 NA non-coding upstream 457745 25208392 ~ 25209842 (+)
XLOC_008549 NA non-coding downstream 1008284 26675985 ~ 26680699 (+)
XLOC_008552 AL954322.1 non-coding downstream 1628975 27296676 ~ 27300833 (+)

Expression


Co-expression Network