CI01000027_07529488_07537870 (DCST2)


Basic Information

Item Value
gene id CI01000027_07529488_07537870
gene name DCST2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 7529488 ~ 7539111 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_07529488_07537870.mRNA
GATGACTCCAAAGAAACCTTTTTTAAAGTCTCTCGGTAGGAAAATATCGCGTTTGCGCCGTAGCTCGGCGGTGCGTCAGGTGAAGCGCAGTCTTGCTGGGTTTACTCTGGGTCTGTTCGTCGCATCAGTTTACGGCATGACAGCGCTGTTCATCCAGAACCACAACCTCTGGTTCTGCGTCATCACTACCGGCATCCTCGCCGCTGCGGCTCTGAGTAAGATTAAGGAAATGGCGAGGAATGCTTACTCAATGGCAGGCCGAGCACAAAACCTCATCAGAGCTCTGACGGAATCTGTGCGGCATGTTGCTCGTATTCTAAGAAACGTACTGCACTTCTTGGCAGATATTGGTGATGTGTGTAATGACAAGCTGGGTCTGCCGTATCAAAAGTGCACTAGGCTGTTTGATGAAAGCCGTGAGAACTGCATGGAGCTGCTCTCTGTGTTCTCGTTCCTCTGCCACCTCCTAGATGGATTTCAGCCTCTATGCGGGCTCGCACGCGCAACCATTGCGGCATTCGATCGAATTAAAAAAGAATTTAAATTCAACATTTCTACCTCCATCAACTTTGACCTGCTTCTGAACAACAGTCAGTCCATGCAGGACGCTGCTCAGGAGATCATGGAGGAAGTGTCTGAACAGCTGGGCCTCCTCCAGGAGCTCAAGGTCCTACTTGCATACATGGGTTTCTTCCTGCTTCTCTTCATGTATCTCCAGGCCGTTCTATACAAAAATCGTTACCTTCATAATGATGAATTTGAGAACATCTACATAACTGACCAGTTTATTGAGCTGGACAGGAAGTGCTCCAGACAGGGCAAAGCAGCAGTACTTCCCCTGAGCCACAGAGAAACTCTCACCTACATCAGGCCCTGCTCTCTGTATCTGACTGCGAGAGAGAGACGGGCTATGGCAGGTCAGATGTTGTCTTTGCTCAGGTATATGGTCATGACAGTCATACTGATAGCTGTTGACTTCATGGTGTTCTGGGTATTTGAGCTGGTACACCACCAGGCCCAAGGTGAAATCGTGACCCAAGCTCCTGTAGTGGTTGCAGTACAAGTGAATGGATCTGGTTACGCCTCAGATATCTTTAGGGACATTGCAGCCTCATTTGACATCCTGCAGAAAGGAAACATCACTGTGCTTAGCAAGAAATGTCTCATGAATCCTTTGGAGCCAGACTACATGAGATACCTGCTCATTGGTACAAGTCTTCTTTATGGCTTCACGCTGTTTATTGTGATTGCTGGTGGCTACGTCAAACGTTTACAGAGGTTTGTGTGTGCCAGGTACCATCCTGAAAGAGAGAAAAAGAGGATCCAGTACCTCCACAGGCATATTCTCACTCAGCGTGGGTCATTAGGAAAAGCCCTACTGAGGGCAGTACAAAGAAACAAGGTGGACCAGAAACAGGGTGGCATTATACAAACATTGGCCAAAAACCTGCCAGGGGGTGTTATCATAGCCAGGCTCCTGGATATCGATAAAGAATCATGCATGGCCTGTGGGAAAGTGCTGGAGAAGAGAGGTCATGATGAAGTGCATATCTGCCCTACCCCTCGCTGCACAGGCCGTTACTGCTCACTGTGCTTCAGACTGATGGGGAACCTGTGTGCTATCTGCATGGGACCGCTCACATTCCAGGAGGAGCAAGAGCTGTATGTCACATGACAGAACAATGATAGACACCTTGATATGATAGCGCAATGTGTTTCTGTGTTTCTCACAAATTGAGGGAGGAGATAATATATAATATATAATTCACCCAAAAATGAAATTTCTGTCATTTATTACTCACCCTCATGTTGTTCCACACCCGTAAGACCTTCGTTCATCTTCGGAACACAAATTAAGATATTTTGTTGAAATCCGAGAGGTTTTTTTATCCTCCATTGAAAGCAATGAAATTAATACATTCATTGTCTAGAAAGGTACTAAAGACATCATTAAAACCGTCGACATGACTACAGTGGTTCAACCTTAATATTACGAATCGACGAGAACACTTTTTTGCGCAAAAACAAAACAAAAATAACAACTTTATTCAACGATTTTTTTCTATTCCCAGTCAGTCTGTTAAGCAGTTGGCGCAGGGCTGCGTTTCCGTGTTTGCGTCCGAACGCCGGCTCATTATTGGCCGGCTTCTGCATCAGCATCACACGCATGCCTCGTGCTGCTCATGTGAAGAGGCGTCGGCCAATACTGAGCCGCCGTTCGGATGCAGAACCAGGAAGCTGCAACAAAAAGTTCCACTGTAGTCACGTCGTCAGTTTTAACGTCTTTAGTCTTTAGTACATTGAATATACTAATTTCGTTGCTTTCAATGGAGTATAAAAAAACCTCTCGGATTTCATCAAAATATCTTAATTTGTGTTTCGAAGATGAACGAAGGTCTTACGGGTGTGGAACGACATGAGGGTGAGTAATTAATGACAGACATTTCATTTTTGGGTGAACTAACCCTTTAACCTGGAATATTTAAACAAATAAAATCATTGTTCAAAGTAGCTTTTATTTTTGCCATTTTAAAAATGGACAAGTAAGTTCTATAAATATAGGCTTGTGAGTTTTAGAGACTCCAGCGACGAGGAGCAAGCTGGTTTTTGGGAGGCCGCTGTAACATCACAGCAGACTGGCCAGGGCATAGAGATGAAGCAAGTAATGATCAGGTATGTGTGCAGAGTAATTGAGCAGTATTGTCACATTTTTGAGTTATACTGATGCAGGGGGCAAATTAGCCGTGGTAACTTTTTTATGTATGTCTGTTTCAGTATTTCCAATCAGGATCATTCTGTATGGCTCAACGGACAATCTAGCCATCAAAATATGGTTGCCAATAACAGTGTTTGAGGCCAAAGCTTCTAAGCTTTAGCAAATTTAGATGTGCAGAGCACTATTTTCTGTGGTGTTGA

Function

symbol description
dcst2 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human DCST2 (DC-STAMP domain containing 2).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_07529488_07537870.mRNA True 2916 mRNA 0.45 11 7529488 7539111

Neighbor

gene id symbol gene type direction distance location
CI01000027_07469157_07471720 NA coding upstream 57489 7468964 ~ 7471999 (+)
CI01000027_07455850_07459062 NMT2, NMT1 coding upstream 70426 7455850 ~ 7459062 (+)
CI01000027_07432479_07451012 FAM171A1 coding upstream 77476 7432479 ~ 7452012 (+)
CI01000027_07375781_07378401 ITGA8 coding upstream 151067 7375781 ~ 7378421 (+)
CI01000027_07292677_07331000 FAM188A coding upstream 198456 7292677 ~ 7331032 (+)
CI01000027_07541256_07541975 NA coding downstream 2145 7541256 ~ 7542152 (+)
CI01000027_07545610_07559939 NA coding downstream 6499 7545610 ~ 7560158 (+)
CI01000027_07561011_07562818 NA coding downstream 21780 7560891 ~ 7563845 (+)
CI01000027_07605090_07608785 NA coding downstream 65749 7604860 ~ 7609540 (+)
CI01000027_07618538_07623119 NA coding downstream 78174 7617285 ~ 7624255 (+)
G141330 NA non-coding upstream 14609 7502066 ~ 7514879 (+)
G141364 NA non-coding upstream 28001 7501157 ~ 7501487 (+)
G141355 NA non-coding upstream 195351 7333909 ~ 7334137 (+)
G141354 NA non-coding upstream 195856 7333422 ~ 7333632 (+)
G141321 NA non-coding upstream 200393 7305684 ~ 7329095 (+)
G142360 NA non-coding downstream 178009 7717120 ~ 7722230 (+)
CI01000027_07789066_07797594 NA non-coding downstream 245663 7784774 ~ 7800723 (+)
G142446 NA non-coding downstream 265431 7804542 ~ 7804806 (+)
G142452 NA non-coding downstream 274549 7813660 ~ 7828067 (+)
G142465 NA non-coding downstream 291881 7830992 ~ 7907635 (+)
CI01000027_06951132_06956691 GLIPR2, GLIPR2L other upstream 571721 6951132 ~ 6957767 (+)
G141082 NA other upstream 628565 6898411 ~ 6900923 (+)
CI01000027_06706050_06708485 NA other upstream 818856 6705983 ~ 6708513 (+)
G141052 NA other upstream 1257888 6271367 ~ 6271600 (+)
CI01000027_07947743_07951397 NA other downstream 411592 7947657 ~ 7951942 (+)
CI01000027_08026500_08029412 ENSAB, ENSA other downstream 487286 8025788 ~ 8032041 (+)
CI01000027_08255251_08264629 NA other downstream 719226 8255073 ~ 8264897 (+)
G143033 NA other downstream 2189704 9728815 ~ 9729551 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_009995 dcst2 coding NC_007127.7 CM002900.2 28727383 ~ 28754071 (+)