CI01000027_07924688_07926502 (LINGO4B)


Basic Information

Item Value
gene id CI01000027_07924688_07926502
gene name LINGO4B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 7924130 ~ 7926502 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_07924688_07926502.mRNA
ATGTTCATGGATCTGTGTGGCCAGCGGGGCGCATGGACAGTCCTGCTGTTGTGGTGCCTAAACCTATCAGCTGCTGACTTCACCTGCCCACAGAAATGCACTTGTTATCATGACACATTGGAGGTCAACTGCTCCTCAAGACACCTGACAGGTGTGCCTGAGGGGTTACCCAGCAATGCCAAACGCTTAGATCTTTCAGGAAACCAATTGAAAACGTTGGCTAGACGTCAGTTTTCCGGTCTGTCAAAGCTGGAGGACCTGGACTTGAGCGAGAACATTATCTCCATGATTGAGGTGGAAACATTTCAGGGGCTGAAGAACCTGCGATACTTGAGGATAAAGAACAACCGCCTCAAGATCCTCCCCGTCGGGGTCTTCTCTGGCCTCTCCAACCTTCAACGTCTGGATATCAGTGAGAATGAGATCCTGGTTTTCCTGGATTACACATTCCGGGACATGATTAACTTACAGCAGCTCGATGCAGGAGAAAACGACCTGGTGTTTATCTCGCAACGGGCTTTTGTTGGGCTGCAGGCGCTGAAAGAGCTGAACGTGGACCGCAGCAATCTAACCTCCATCCCCACTGAGGCTCTGTCGCAACTTCAGAGCTTGACCAAGCTGCGTCTGCGCAAGCTGACCATAAGCGTGCTGCCCAACAACGCCTTTCGCCGACTGCACCAGCTGCGCACATTGCAGATCCTCCATTGGCCTTCTCTCGAGACGCTTAATAGCAACAGCCTGGTCGGTCTCAACCTTACCACTTTAGTTTTAAGCAACTGTAACCTTAGCTCTGTACCTTACGCTCCCTTGCGCCATCTCACTTACCTGCAGTATCTCGACCTGTCCTACAACCCCATCACCTCCATACAAGGCAACTTGCTGGGGGAGCTTCTTCGGCTGCAGGAGTTGCACCTGGTAGGTGGGAGCTTGTTACGTATTGAGCCGGGTGCCTTCAGGGGTCTGGTCCACTTTCGTTTGCTCAATGTGTCCTCAAATCGTCTAACGACATTGGAAGAAAGTGTCTTCCACTCCGTAGGGAACTTGCAGACACTGCGGCTGGACAGAAACCCGTTGGCTTGCGACTGCAGGCTACTCTGGGTTGTGCGACGGCGTCGGCGGCTGGATTTTGATGGCCGCCAACCCACCTGTTCGGCTCTGAATCAGCACAAGAAGGCATTTCGTGACTTTTCAGAGGATGACCTTCCAGTTATATTTACGTGCAGACAAGCACAGATTCTGAACCGCCAGCTGCAGGATGTGAGTGTGGTGGAGGGCATGAGCATACGCTTTGACTGCAGAGCCGACGGCTATCCGTCGCCTTCTATTACTTGGCTGTCAGCCCAACAGACTGCACTTAGCTCTGTCGGGAGAGTACGAGTGCTTGCTAATGGGAGTTTAGAAGTGCGTTACGCCCAAGTACAGGACAGTGGAACGTATCTATGTATTGCAGCTAATGCAGCGGGTAATGACAGCATCTCCATGAGTCTCCAAGTGGAGGGGATCCCACAAAACCGCACAGCATCGTATTTCTCAGACGAGGGATGGATGGAAACTTCATTACCTCCTTCTACCAACTCCTCGGCACGGGTGTCAAATCCTTACCCATTTGATGCTAAAACCCTCATCATTGCTACCACCATGGGATTTCTCTCTTTCCTCAGCTCTGTGGCGATCTGTTTTGTGTTTATGTTCTTCTGGAGTCAGAGCAAAGGACAGATAAAACACACTGCCACTATAGACTTCGTGCCACGATCATCCATGGGTGGAGGTGGAGATGGTGGGGACACTGGGAGATTCACAATGAAGCTTATTTGAGCTGGAATAGAAAATGAATGGTCACAGTTACAATTAGTTAAGCCTTTAAAACTGTAGTAACTCTCAAAGTTGCAGCTTGCCAACACAGCAAGGTACAAAGCCTTATGATAACACATTTTGCAAGCCTGACTGACATTCATGTAAATAGGTATAGTAACTTATCTTTATAATAATCTCATTCATATTTTGCAAGCCTGATTGACATTAATGTAAGTAGGTATAGTAACTTCTCTTTATAATAACAACATTTTAGCTGAGAAGTTTGATTATATCAAATTTAAGATAAGTAGGTTGTATTGTGGATTGAGCAATGCCAAAGTCTGAAGACAAACAACAAATACTCTTAGTGTCCGATAGTAATAATTCATTTTCATAAAATAATACAATTATATATAACATTTATTTACTATTAAGTACTATTAATAGTACATTTTACGTAAATAATTTTAATATTGATAATTAAACATTACATTTATTTACTAATTAATTATATATACACACATAATATAGTGTGTAAAGACTTTTTTTTTTATATATATATAATTTTCCACTAATAAA

Function

symbol description
lingo4b Predicted to enable epidermal growth factor receptor binding activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular matrix and extracellular space. Is expressed in Purkinje cell; cerebellum; granule cell; hindbrain; and optic tectum. Human ortholog(s) of this gene implicated in autosomal recessive non-syndromic intellectual disability and glaucoma. Orthologous to several human genes including LINGO1 (leucine rich repeat and Ig domain containing 1).

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_07924688_07926502.mRNA True 2373 mRNA 0.45 1 7924130 7926502

Neighbor

gene id symbol gene type direction distance location
CI01000027_07904624_07919811 NA coding downstream 4319 7904624 ~ 7919811 (-)
CI01000027_07888504_07893711 TLR18 coding downstream 30419 7888504 ~ 7893711 (-)
CI01000027_07876459_07878548 NA coding downstream 45582 7875493 ~ 7878548 (-)
CI01000027_07850115_07861432 BCAN coding downstream 62698 7849703 ~ 7861432 (-)
CI01000027_07821062_07827997 RHBG coding downstream 96038 7821062 ~ 7828092 (-)
CI01000027_07993673_08002214 ONECUTL coding upstream 66833 7993335 ~ 8006263 (-)
CI01000027_08016916_08025375 NA coding upstream 90027 8016529 ~ 8025455 (-)
CI01000027_08073979_08077754 SCNM1 coding upstream 147159 8073661 ~ 8077754 (-)
CI01000027_08081583_08083496 TNFAIP8L2B, TNFAIP8L2 coding upstream 154767 8081269 ~ 8083496 (-)
CI01000027_08091338_08097220 NA coding upstream 164791 8091293 ~ 8097220 (-)
G143341 NA non-coding downstream 119364 7804315 ~ 7804766 (-)
G143334 NA non-coding downstream 125486 7793708 ~ 7798644 (-)
G143304 NA non-coding downstream 148502 7775403 ~ 7775628 (-)
G142307 NA non-coding downstream 381175 7539471 ~ 7542955 (-)
G142320 NA non-coding downstream 470526 7448773 ~ 7453604 (-)
G143371 NA non-coding upstream 18346 7944848 ~ 7945079 (-)
G143372 NA non-coding upstream 19776 7946278 ~ 7946521 (-)
G143316 NA non-coding upstream 24202 7950704 ~ 7985293 (-)
G143320 NA non-coding upstream 29566 7956068 ~ 7964780 (-)
G143325 NA other downstream 38081 7884535 ~ 7886049 (-)
G143267 NA other downstream 250361 7669329 ~ 7673769 (-)
G142299 NA other downstream 483939 7439178 ~ 7440191 (-)
G142209 NA other downstream 766132 7153623 ~ 7157998 (-)
G142203 NA other downstream 781067 7141094 ~ 7143063 (-)
G144365 NA other upstream 2612278 10538780 ~ 10542148 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location