CI01000027_07947743_07951397


Basic Information

Item Value
gene id CI01000027_07947743_07951397
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 7947657 ~ 7951942 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_07947743_07951397.mRNA
CATATAAAAAAGGTCGTCGACTAACCAGATTCAAACCAGCATCCATCTTTTGTTCTGAACTTCTGGAAATCATTCAGGATCAGCAGTGTGCCTACAACATTTCAGCGAGAGCGGCCAGTTGCAAAGGGTATAAAGAGATTCCTCAGGGTAATGAGAGGGCTCTGACTGCTGCCGTGGCAAAGGTGGGACCTGTGTCAGTGGGTATAGATGCCATGCAGTCCACCTTCCTGTACTATAAAAGCGGTGTGTACTATGATCCCAACTGCAACAAAGATGATGTCAACCATGCAGTGCTAGCTGTTGGTTACGGAGTCACACCGAAAGGCAAAAAGTACTGGATTGTGAAGAACAGTTGGGGTGAAGACTGGGGAAAGAAGGGGTATGTCCTGATGGCTCGTAACCGTAACAATGCATGTGGCATTGCCAGCCTGGCCAGTTTCCCAGTCATGTGAGAGCTGGAAGCAGGGAGCTCACAAGAGACCAAACTTCAGTCTGCTGCTGACCAATAACAAAAGGGACTCATCACTATCATTGTGCTCCATCATGTAATAATGTTCGGGAAAACACTCTCTAAAAGAGGCAATTAATTTTAATACCACAAGGTTGAGTGTATTTTTCTCTTGTGTCTTAGATGTCTTGTTTTTAATCCTGTCAACTCATGCAGTCGAAACTGTTTTGTGCAATATTTGAAATTCAGAAGGGAAGTTTTGATATTGTGTACACAGTCTGTTAAGTTTTTTCTCCCCTGGTGGGATCTGAGATCTCTGTTTTATATTTTGATTATATAAATTACCAAGGGCTTTTTATGACCATATTAA
>TU161924
TGCAGGATCAGCAGTGTGCCTACAACATTTCAGCGAGAGCGGCCAGTTGCAAAGGGTATAAAGAGATTCCTCAGGGTAATGAGAGGGCTCTGACTGCTGCCGTGGCAAAGGTGGGACCTGTGTCAGTGGGTATAGATGCCATGCAGTCCACCTTCCTGTACTATAAAAGCGGTGTGTACTATGATCCCAACTGCAACAAAGATGATGTCAACCATGCAGTGCTAGCTGTTGGTTACGGAGTCACACCGAAAGGCAAAAAGTACTGGATTGTGAAGAACAGTTGGGGTGAAGACTGGGGAAAGAAGGGGTATGTCCTGATGGCTCGTAACCGTAACAATGCATGTGGCATTGCCAGCCTGGCCAGTTTCCCAGTCATGTGAGAGCTGGAAGCAGGGAGCTCACAAGAGACCAAACTTCAGTCTGCTGCTGACCAATAACAAAAGGGACTCATCACTATCATTGTGCTCCATCATGTAATAATGTTCGGGAAAACACTCTCTAAAAGAGGCAATTAATTTTAATACCACAAGGTTGAGTGTATTTTTCTCTTGTGTCTTAGATGTCTTGTTTTTAATCCTGTCAACTCATGCAGTCGAAACTGTTTTGTGCAATATTTGAAATTCAGAAGGGAAGTTTTGATATTGTGTACACAGTCTGTTAAGTTTTTTCTCCCCTGGTGGGATCTGAGATCTCTGTTTTATATTTTGATTATATAAATTACCAAGGGCTTTTTATGACCATATTAAATAAACTGTTAATTTTGAGTACATCATACTTGGGTTAAAGTATCTTTTTTTCTGGTGTAAAAAAAGGTCACACTACTAACACTTTCAATGAATAAAAAGTCAGTATCACACCTCTGTACAGAAACATTATGTAAAATACAAAACAGAGAATAAAACATCTGTGCCAACCCTCCTTATTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_07947743_07951397.mRNA False 818 mRNA 0.43 4 7947743 7951763
TU161924 True 925 TUCP 0.41 3 7950703 7951942

Neighbor

gene id symbol gene type direction distance location
CI01000027_07932282_07935282 NA coding upstream 12401 7931927 ~ 7935342 (+)
CI01000027_07843550_07849059 HAPLN2 coding upstream 98609 7842846 ~ 7849134 (+)
CI01000027_07789066_07797594 NA coding upstream 150143 7784774 ~ 7800723 (+)
CI01000027_07695223_07701346 NA coding upstream 245920 7695046 ~ 7701823 (+)
CI01000027_07686575_07690215 GPATCH4 coding upstream 257396 7686575 ~ 7690347 (+)
CI01000027_07954714_07957187 NA coding downstream 2951 7954714 ~ 7957449 (+)
CI01000027_07962587_07964571 NA coding downstream 10824 7962587 ~ 7964605 (+)
CI01000027_07973865_07979402 NA coding downstream 21932 7973695 ~ 7979463 (+)
CI01000027_07981813_07992141 NA coding downstream 29874 7981637 ~ 7992272 (+)
CI01000027_08026500_08029412 ENSAB, ENSA coding downstream 74025 8025788 ~ 8032041 (+)
G142466 NA non-coding upstream 27762 7908571 ~ 7919981 (+)
G142526 NA non-coding upstream 32100 7915324 ~ 7915643 (+)
G142465 NA non-coding upstream 40108 7830992 ~ 7907635 (+)
G142475 NA non-coding upstream 87127 7859247 ~ 7860616 (+)
G142467 NA non-coding upstream 94537 7846622 ~ 7853206 (+)
G142546 NA non-coding downstream 37356 7989119 ~ 7989331 (+)
G142549 NA non-coding downstream 49761 8001524 ~ 8001756 (+)
G142550 NA non-coding downstream 50293 8002056 ~ 8002354 (+)
CI01000027_07469157_07471720 NA other upstream 476029 7468964 ~ 7471999 (+)
CI01000027_06951132_06956691 GLIPR2, GLIPR2L other upstream 989976 6951132 ~ 6957767 (+)
G141082 NA other upstream 1046820 6898411 ~ 6900923 (+)
CI01000027_06706050_06708485 NA other upstream 1237111 6705983 ~ 6708513 (+)
G141052 NA other upstream 1676143 6271367 ~ 6271600 (+)
CI01000027_08255251_08264629 NA other downstream 306574 8255073 ~ 8264897 (+)
G143033 NA other downstream 1777052 9728815 ~ 9729551 (+)

Expression


Co-expression Network