CI01000027_09472471_09475553


Basic Information

Item Value
gene id CI01000027_09472471_09475553
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 9472352 ~ 9476152 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_09472471_09475553.mRNA
ATTTGGGTTAGCATTAAAGCTGGGTTTCTATGGGAGAAGTGCAGGGCACAACAATAGCAGAACAGAAACTGTCTACTTACACATGACCAGAACAAATCGCTTCCCTTTTTTTTACTAATATAAAGAATTATTTTGCAATAGACCTTACCCACTAATCTGCTGTCTTAAAGATGTTGGTTAATTTCCAGCCTCTAGATTTCCACATTCCATCCTCCAGATTCTAGAATTCCAATAACAAAAAGCTCATTGTCAGTTCTACAGATCAGCTTTATACCAAAATGCAGTGTTGGGATTTTGTTGAGATCAGTGTTGGGGCTGCTGTTGCATGATGGGTAAATGTGTCCATACACATCTGTAGTCTGTTTTGATTTTCAGCAGAACCTGATGAGCTGGTTTTGGTCACGGTCCTTTACTGAGTGGGAGGGGGAAAAGGATGGACAGGGAGGGATTTGATGAGCTGTGGTGAATGCCAGGAACAGAAAAGGAGGAGATAAAGGAGGGTGTGGAAAACAAAGTGAAAAAGAAATTAAAGAGAGCGAGAGAAAAGGGAGTGCCATAGCAGAATCCATCTCTTTCAGTTTACCAACTTATTTGGAGCCATGACTGTACCAGCTATGGATTCTTTTAAGACTGTCCTAAGGTTCCTCACGAATCAGAAGAGCACTATTGGCTACAGCTTCATGGCTATTTTGACAATAGGTAGTGAAAGAATCTTCTCCATGGTGTCTTTTCAGTGTCCGTGCAACCGAGAACAGAATTTTTCCTATGGATTAACTTTCCTGCTGGGCCCTGCTGTCGTTTTGCTGGCGATTGGTCTCTTTGTTAGTTCACGTCTTTGGCGGTTATATACTGGGTGTTGTCTCAACCCTCTCAAACTATGCCCCAGGGGTAACTTTGTGGGATGCTTATCAGTGTTTGTAAAAGTGGTATCTGGAGCCTGCATTGCCCCCATAATGTGGCTCACTGTAGCACTGTTAAATGGAACTTTTTATGAGTGTGCTATCAGTGGCCTGGATGAAAACATGGTGGTGAAAATTTTCTGCCAAAACAAGACACCTACGTGCCGGGAAGAGCTGCCCCGAGTGCCCTGCAGCAAGTCCCAGTTGTCTTCAAATGAAAATATGGAACTGCTGTTGATGTTGCGAGCCCAGTCACAGATACTCGGCTGGTCCATTATTATCATATCAGCAATAGTAGCGCTGATCGGGACTTGCTTTAAGAACTGCCGCTCTCAAGTAAGCTACCTTCAGTTAACTTTCCAGAAAATCTACATGGAGAAGGAAAGGGAAAAGTTCGAGACTTTTGCAGAAGACTATGCCACCAAACTAGCAGAGAGAAACCTCAAGAGTTTCTTTGACAACAAATGTCCCGAACCATTTCCCTTTCCAAATCACAAGGCCTGGGAGGAGATCTCTGCTGTATACACCTTTAGACAAAGTGAACAATACTACAGCACGTTGCAGAGATATGTGGAGCGCACAGATCGGGACTACAGCCCTGAGAAGCGTCCTGTTCTAGAGGGGGAAGACGGCATAGAGATGGCTTAGAAGCACAAAGCTGCATGGACTGGTAACTGAATAGCCTAGAATATGAAAAGCAAAAGCTACTGTGAATCTAAGCAGAATTAGATTTTTGTTTGGTAGCTACAACCTGTATTGAAAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_09472471_09475553.mRNA True 1666 mRNA 0.43 2 9472352 9476152

Neighbor

gene id symbol gene type direction distance location
CI01000027_09464510_09467490 RWDD1 coding downstream 4612 9464211 ~ 9467740 (-)
CI01000027_09437673_09445306 IMA5, KPNA5 coding downstream 26804 9436243 ~ 9445548 (-)
CI01000027_09401652_09408536 CNOT3, CNOT3A coding downstream 63351 9401388 ~ 9409001 (-)
CI01000027_09341489_09346178 NA coding downstream 125689 9341443 ~ 9346663 (-)
CI01000027_09332854_09337620 NA coding downstream 133176 9332734 ~ 9339176 (-)
CI01000027_09476738_09478257 FAM26F coding upstream 347 9476499 ~ 9478417 (-)
CI01000027_09504696_09522574 MMS22L coding upstream 28450 9504602 ~ 9522837 (-)
CI01000027_09668229_09671091 NA coding upstream 190938 9667090 ~ 9671091 (-)
CI01000027_09702760_09713076 FAXCB coding upstream 226069 9702221 ~ 9713362 (-)
CI01000027_09714931_09721135 COQ3 coding upstream 238724 9714876 ~ 9721135 (-)
G143818 NA non-coding downstream 14813 9457226 ~ 9457539 (-)
G143817 NA non-coding downstream 17459 9454235 ~ 9454893 (-)
G143694 NA non-coding downstream 47728 9423411 ~ 9424624 (-)
G143814 NA non-coding downstream 49010 9422863 ~ 9423342 (-)
CI01000027_09252655_09272284 NA non-coding downstream 214471 9252394 ~ 9273662 (-)
G143820 NA non-coding upstream 2414 9478566 ~ 9478786 (-)
G143830 NA non-coding upstream 53994 9530146 ~ 9530858 (-)
G143831 NA non-coding upstream 55664 9531816 ~ 9532071 (-)
G143833 NA non-coding upstream 60214 9536366 ~ 9536634 (-)
G143839 NA non-coding upstream 70067 9546219 ~ 9546419 (-)
G143325 NA other downstream 1586303 7884535 ~ 7886049 (-)
G143267 NA other downstream 1798583 7669329 ~ 7673769 (-)
G142299 NA other downstream 2032161 7439178 ~ 7440191 (-)
G142209 NA other downstream 2314354 7153623 ~ 7157998 (-)
G142203 NA other downstream 2329289 7141094 ~ 7143063 (-)
G144365 NA other upstream 1062628 10538780 ~ 10542148 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010834 calhm5.2 coding NC_007127.7 CM002900.2 32205660 ~ 32208728 (-)