CI01000027_10048220_10051640


Basic Information

Item Value
gene id CI01000027_10048220_10051640
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 10048127 ~ 10051744 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_10048220_10051640.mRNA
CTTTAAATGAGTGTTTTATCCCTCCTAATCATGTCAAACTCCAAAATCATTTCTCATCATTTACTTTTAATAGATAATTTCTGTCCTGGGGAAATGGGGAGCGGACTGGAACCAGATCAAGAAGCTATGCTTAATTTAAATGAAAGTACACCAAAAACTTTAACCACAGATTCAAACTTGTGCAACAACCTACAGTGCTACATGGTCCTGAGCGAACCAGAGCAGAAAGCTATTGGCTCAATTTGCTTGCTAGCTGGTCCCGTGACTTTCCTGGAGAACGTTTTGGTCCTGGTGGTCATTGCAAGCTCCGCCACGCTGCGCAGACGGCCATCATACCTGTTCATCGGCAGCTTGGCACTGGCTGACACTTTTGCCAGCTGTGTCTTCACCATAAGTTTTCTATATTTCCATCTTTATAGTAAAGGCAACAGTAATGGCGACGGCGCTAATATCTATCTGTTCAAGCTGGGTGGTGTCACAATGGCCTTCACAGGCTCTGTGGGAAGTCTATTGCTGACAGCGCTGGACCGTTATCTCTGCTTTTACCAGGCTTCCAATTACAAGGTGCTATTGACACGCACAAGGGCCAAGCGGGCTATAGTATTATTATGGTGTGTAACAATTATAATTTCATTCCTTCCTCTGATGGGTTGGAGGTGCACAACCAGATTTGATCCTCCTTGTTCCCGTCTTTTCCCCTTTGTGGATCATCGCTACCTGGCATGCTGGACGGGCCTGCAACTTGTGGTGCTGTTCCTTATCACAGTGGCTTATGCCCTCATCCTGTGGAAAGCAAACCGGCATGAAGCAGCAATGGGTGGATCAAAGTTGAACCATGAAGCAGCAACGGATGGACCAAAGTTGGGGAGGCCGAGCATAAAAGGACAGACTCGAATGCGAATGGACATTCATCTCGCACGCACCTTCAGTCTGATCCTCCTAATCCTCGCGGTTTGTTGGCTGCCTGTCCTTTCTTTTATGATGGTGGATGTCATGGTGACCCTTGATAAAACACAACAGCGAATATTCGCTTTCTGTAGCACGCTCTGCCTGGTGAACTCGTGTGTAAACCCGCTCCTATACGCCCTACGCTGCCGAGAGCTGAGGGGAGAACTGTTAGCACTGTTCAAATGTTGCAGGGAACATACTTTGGGAAAAACTCATAGCCAAAAAAATGAAAATAATTCTGGCAAAAAGAGCAAGGATCAGACAGTGAGTAATAGTAATCCAGATACTATTTCTGAGAGTGTAGACAACCAGCAAAACAGCATACAAATCTTATAAAGTCTTCAAGGTCATCATTTTCATCCATTTTGCTGAAATGTAGTTCTTTATTATAGTATGCCTTGCCGTTACATTGCTTGTGATAAGAATTTGCAGGATATCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_10048220_10051640.mRNA True 1388 mRNA 0.45 2 10048127 10051744

Neighbor

gene id symbol gene type direction distance location
CI01000027_09958003_09959274 NA coding upstream 87865 9955825 ~ 9960262 (+)
CI01000027_09931428_09937694 NA coding upstream 110375 9929615 ~ 9937752 (+)
CI01000027_09783491_09789725 PRDM13 coding upstream 257941 9783491 ~ 9790186 (+)
CI01000027_09774092_09779035 NA coding upstream 268998 9773992 ~ 9779129 (+)
CI01000027_09767653_09768743 NA coding upstream 278725 9767653 ~ 9769402 (+)
CI01000027_10055186_10067131 AKIRIN1 coding downstream 3442 10055186 ~ 10067131 (+)
CI01000027_10072946_10084310 RHBDL2 coding downstream 20693 10072437 ~ 10084566 (+)
CI01000027_10090545_10093306 CX55.5 coding downstream 38801 10090545 ~ 10093746 (+)
CI01000027_10098742_10105152 RRAGC.S, RRAGCA, RRAGCB, RRAGC coding downstream 46968 10098712 ~ 10105308 (+)
CI01000027_10368925_10370031 POU3F1, POU3F1.L, POU3F1.S coding downstream 316663 10368407 ~ 10371305 (+)
G143195 NA non-coding upstream 4053 10040906 ~ 10044074 (+)
G143205 NA non-coding upstream 34778 10011873 ~ 10013349 (+)
G143159 NA non-coding upstream 150075 9896693 ~ 9898052 (+)
G143156 NA non-coding upstream 183022 9864631 ~ 9865105 (+)
G143034 NA non-coding upstream 337867 9701004 ~ 9710260 (+)
G143230 NA non-coding downstream 38955 10090699 ~ 10090928 (+)
G143237 NA non-coding downstream 55652 10107396 ~ 10107823 (+)
G143240 NA non-coding downstream 56723 10108467 ~ 10108834 (+)
G143244 NA non-coding downstream 62210 10113954 ~ 10114160 (+)
G143246 NA non-coding downstream 63030 10114774 ~ 10115011 (+)
G143033 NA other upstream 318576 9728815 ~ 9729551 (+)
CI01000027_08255251_08264629 NA other upstream 1787301 8255073 ~ 8264897 (+)
CI01000027_08026500_08029412 ENSAB, ENSA other upstream 2016086 8025788 ~ 8032041 (+)
CI01000027_07947743_07951397 NA other upstream 2096185 7947657 ~ 7951942 (+)
CI01000027_07469157_07471720 NA other upstream 2576413 7468964 ~ 7471999 (+)

Expression


Co-expression Network