G138068


Basic Information

Item Value
gene id G138068
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 111344 ~ 113090 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU156839
CGGAGTAGAGTACAACAATCATAATCATGTTTTGGGCTTTGACTAAACTTGAGCGAGTTTTTGTACATGAAGCCCCGCAAGACCCATATGTAAATAATAAACCCATGTAGCATTTGTGTCACGTTTTGGCTCGTAAATTCATGAAAAATGCTTCAATTGTGGAAAATTGGACATCATTATTTATTTACAGCAGATTCTCATGATTAAGTGAGTCCAACATCAGCATAATCCAATAAACCGATCACGAGATATTGATTACGCAATTAAAACCCCACAGGCGCAGATGCTAACTCAAACTAAAATAGCTTTCATGTGTCATTTTAGCTTATAACTTCATGAAACATGCATAGATTGTAGAAAACGGCACATTATTACTTACAGTGGATTCTCCCGATTGAAATGAGTCCAAGATCTAAATAATCCCATGTGCCGATCACGAGCTACTTCACGTGAAAGAACGATTTTAAAAATGCCCATCAGGGGGCGCCAATGGATAAACAAAAAGGCTACCTTGGTTCCAAATGCTGTAACTTTTGATTTCTTTATGCGATCACCACAAAATTTGATCCAAATACAGCTCACATATAGAGGAACATCACCAAAAAAGAATGAACCCGCTAGATGAGATATTCCATTTTAAATTAGAAAGATATGTAAATTTTCCCTTTTTTCCCACTTTTTTTTTTTTGCAGTTTCTCAGCGTGAAAATGTCCAAATTTAATTAAGTTATTTATTTTTAAATTGAAAAAAAGTTTCGTTTTGACTCTCTTACGAGTCTTTACTTTGTGTGTCACTCAGGAAAAAAAAAAAAAAAAATACCCTCAGGGCTTAAGGGGTTAATAAAGGGGTCATAAATTCAGAATGCGTACCGAACTGAAAGACACATCCTGGAGTTTTCCGGTACAAATACGTGTAGCGTTACACCCCTAACTCCCTCTGATGTCACAGAAGCAGTGAGATCCTAACACACATGCATGATGACATGCAGCAGAGGCGCAGTAATGTGGAGCTCGAGAGAGTCATACCTGAGCCCCCATGTGATAGGGAGGCTGCTCTCCGTTCATTGGAGGAACTCCTAGGAAGCAGTCAGCTGACCCCGACAGCGAGAACGACCCTGAGTGTGGGGTGATTCCTCGCTCTGTGTCGCCCCTAGGGCCGTCTTCATGGCGTACAGATTGGCCTCTTCCTGGAACTTCCCAATGTTCTTCTTATAGCGAATCCTCTTGTTGCCAAACCAGTTGGACACCTGTCACGATTTCAGAGCCAAAATGAAACCGATATCCCTCTGATGACCGGACGCTCCCGTAGCGCGCCGAGAGCCAGGCGATCTCAAAGGCTCATGGGAAAGCAGCCTAGTAAACAGATGTGATAGAGGAGCTCTTACCTGAGACACAGTGATACCGCAGTTCTTGGCCAGCTCTTCTTTGGCCTCCTCGCTCGGGTAAGGGTTCGATAGATGTGAATAGAAATACTCGTTCAGCACCTCTGTAGCCTGTTTACTGAAATTACGCCGCTTGCGTCTGACAAAGCAAGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU156839 True 1534 lncRNA 0.42 2 111344 113090

Neighbor

gene id symbol gene type direction distance location
CI01000027_00089337_00092919 NA coding upstream 18259 88779 ~ 93085 (+)
CI01000027_00000579_00037786 NA coding upstream 73492 579 ~ 37852 (+)
CI01000027_00122108_00124986 NA coding downstream 8934 122024 ~ 124986 (+)
CI01000027_00229612_00237058 RAD21A, RAD21B, RAD21 coding downstream 115915 229005 ~ 237759 (+)
CI01000027_00238851_00240657 NA coding downstream 125761 238851 ~ 240991 (+)
CI01000027_00250077_00273130 EIF3H coding downstream 136666 249756 ~ 273130 (+)
CI01000027_00365674_00371897 CSMD3 coding downstream 251900 364990 ~ 371996 (+)
G138060 NA non-coding upstream 2260 108124 ~ 109084 (+)
G138062 NA non-coding upstream 22732 87492 ~ 88612 (+)
G138029 NA non-coding upstream 32479 77537 ~ 78865 (+)
G138077 NA non-coding downstream 39198 152288 ~ 152795 (+)
G138090 NA non-coding downstream 72960 186050 ~ 186273 (+)
G138093 NA non-coding downstream 78090 191180 ~ 191429 (+)
G138094 NA non-coding downstream 83687 196777 ~ 197714 (+)
G138104 NA non-coding downstream 103198 216288 ~ 217000 (+)
G138030 NA other upstream 11087 39146 ~ 100257 (+)
CI01000027_00391159_00499309 CSMD3 other downstream 305204 390683 ~ 499760 (+)
G138238 NA other downstream 716684 829774 ~ 831683 (+)
G138247 NA other downstream 742298 855388 ~ 893121 (+)
G138290 NA other downstream 882880 995970 ~ 999181 (+)
G138436 NA other downstream 1393871 1506961 ~ 1507816 (+)

Expression


Co-expression Network