Gene
RNA
| Item | Value |
|---|---|
| gene id | G138077 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000027 |
| NCBI id | null |
| chromosome length | 10680226 |
| location | 152288 ~ 152795 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU156850 | True | 508 | lncRNA | 0.40 | 1 | 152288 | 152795 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000027_00122108_00124986 | NA | coding | upstream | 27302 | 122024 ~ 124986 (+) |
| CI01000027_00089337_00092919 | NA | coding | upstream | 59203 | 88779 ~ 93085 (+) |
| CI01000027_00000579_00037786 | NA | coding | upstream | 114436 | 579 ~ 37852 (+) |
| CI01000027_00229612_00237058 | RAD21A, RAD21B, RAD21 | coding | downstream | 76210 | 229005 ~ 237759 (+) |
| CI01000027_00238851_00240657 | NA | coding | downstream | 86056 | 238851 ~ 240991 (+) |
| CI01000027_00250077_00273130 | EIF3H | coding | downstream | 96961 | 249756 ~ 273130 (+) |
| CI01000027_00365674_00371897 | CSMD3 | coding | downstream | 212195 | 364990 ~ 371996 (+) |
| CI01000027_00391159_00499309 | CSMD3 | coding | downstream | 237888 | 390683 ~ 499760 (+) |
| G138068 | NA | non-coding | upstream | 39198 | 111344 ~ 113090 (+) |
| G138060 | NA | non-coding | upstream | 43204 | 108124 ~ 109084 (+) |
| G138062 | NA | non-coding | upstream | 63676 | 87492 ~ 88612 (+) |
| G138029 | NA | non-coding | upstream | 73423 | 77537 ~ 78865 (+) |
| G138090 | NA | non-coding | downstream | 33255 | 186050 ~ 186273 (+) |
| G138093 | NA | non-coding | downstream | 38385 | 191180 ~ 191429 (+) |
| G138094 | NA | non-coding | downstream | 43982 | 196777 ~ 197714 (+) |
| G138104 | NA | non-coding | downstream | 63493 | 216288 ~ 217000 (+) |
| G138106 | NA | non-coding | downstream | 65328 | 218123 ~ 218344 (+) |
| G138030 | NA | other | upstream | 52031 | 39146 ~ 100257 (+) |
| G138238 | NA | other | downstream | 676979 | 829774 ~ 831683 (+) |
| G138247 | NA | other | downstream | 702593 | 855388 ~ 893121 (+) |
| G138290 | NA | other | downstream | 843175 | 995970 ~ 999181 (+) |
| G138436 | NA | other | downstream | 1354166 | 1506961 ~ 1507816 (+) |
