G139117


Basic Information

Item Value
gene id G139117
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 234212 ~ 237579 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU158093
TGCAGTTCCAACCACTGTCAAAATTAGACATTTTCTTCCGCCTATAAATACCGAATGCCTCACCTCTTCGTCGCTGTCGTCCTTGTCCTTCTCCTTGTTCTTGTCATCTAACAGGTCGAACTCTGGCACCAGTCTAGAGAGGTTGCTGATGTCCTCAGGAGGAAGATCCACCTGGGGCATGTCGAGCTGATGGGAAAGGACCGACTGATCCACGGGCTGAAGCGTCTGATCCAACACTGCCATTTGCTGAAATGACAATTGCGCACCGTTACGCTCAGTTTCAAAACCTTTACTAGCAAGCATGATTATCTGGTTGACTTACAGGCAACACTGCTTCGTTCTCAAGCGATTTGCGCTTCACTCCACGCTGGCGAGACGGAGGCGGCATCATGGACTCGTCAAGAGCGGTTCTGCTGCCCTCCACAGAGGACGCCTGCAGCATACTGGGCTCCTCCATGATGGTCTGATCAATCACATCACTCCTGTGACCCAGCGCCTCCTCTCTGGGCACTTCTGGGTTCTCCAGCTCCTTCAGGAAGTCCTCCAGGCTGTCGGCCTCCCCTCCCTTCCTCCTCTTCCTCAGGTCATCAGGCACCAGTGGAGTCAAGCAGCGAGTAAACATCTACAACAGACACATTTCCTATGATTTCAGCCCTGGGCTTTAGCATTACTGATGTTAAAGTGATGTAGGATCGACCCATCACCTTCAGCAGACGTCCGTTCCAGAGGGGCTGAGCAGGCAATGAGAACAGCTTCTCCACACCTCCAGTCTCCTTCCACATCATCAGCTTCTTAGTAGGAGGAGCCAAATCCAGTGTGGTGACGATATCGGAGTAATCGCTCAACTGGGCACGGATAGTCTTGCTGTCCAACTCCTTCAGGCTGTCGACGATGAGCTTCCTCTTTCTCTTAGCCTTGGTTTCTTTCACTGAGGACATTCACAATTAATATTGATGTGTAAACAAGCTATGAGGCTAAGATTTAAAGGGGTGGTTCATTGCGATTTCACTTTTTTAACTTTAGTTAGTGTGTAATGTTGCTGCTTGAGCATGAACAGTATCTGCAAAGTTACAGCGCTGAAAGTTCAATGCAAACAGAGATATTGTCTTTTAAAGTTATGGCAGTTTAATGTCTACAATTACGACCGGTTTGGACTACAACGAGCTTCTTCCCGGGTTGGTGACA
>TU158094
TTTCAATCAATATCAAAATTTAATCACAAGTGCATAAAAATTCCAATTGTATGTAGGAGTTTAAGAAACCTTTAATAATCATAATTGCCATTAAAAGAGAGATACAAAACATTGAACTGTTGTGTCATTAAATCCACTTGGGTTTCCAAAAATAAACCTTTGTCTCTCAATTGTGACATTATTAAAAAGTTAAAATGTACACTTAACTAACTCTACTACAAATGTAAAACTTACTGAGATAAAGCTTATGAAGGAAAATAAAAACAGAACGATGGGAAAACAACAAGTAGTGAAACTGAAAGATCCCAATGGTTTGACAATATGGATGTCCAACATGCACTAGCATATAACACCTTACTATGAGGGTACAATGTCTTCATGATCTATTGGGTTTGACTTAAAACCTTTAAATTGGCCCCAAAGGACACAAACAGATACAAAAAGCAACAGTAGCAAAACAAAATTGTTAAATACAACTAATAAAAACAAAAAAAAGAAAAAAAAAAATAGAGGGTATGCTTCTATACAATATGGAACCGCGGTCCAGGCGTGGCGACGATGTCACTGTATGGCTCTGTCTGCGTCAGCTCGATGGCCTGCTGTTTCTTCAGCACCAGGAAGCTGTAAAACTTGGCCGCAGCCTGTTTCTTGTTGTTGTTTCTGCACAGCTCGAGCAGGCTGATAGACTGGGCTCCGGTTTTAGCCACCACACGCTGAAGGCCGTGAAGCATCTGCTGAGTTCTCTTGTTCCACCTTCTCTCCTCTTGGTCCTGGTCTCCTCCTTGTCCCTCTTCGCCCTCTTCGTCGCTGTCGTCCTTGTCCTTCTCCTTGTTCTTGTCATCTAACAGGTCGAACTCTGGCACCAGTCTAGAGAGGTTGCTGATGTCCTCAGGAGGAAGATCCACCTGGGGCATGTCGAGCTGATGGGAAAGGACCGACTGATCCACGGGCTGAAGCGTCTGATCCAACACTGCCATTTAGGCAACACTGCTTCGTTCTCAAGCGATTTGCGCTTCACTCCACGCTGGCGAGACGGAGGCGGCATCATGGACTCGTCAAGAGCGGTTCTGCTGCCCTCCACAGAGGGGCTGAGCAGGCAATGAGAACAGCTTCTCCACACCTCCAGTCTCCTTCCACATCATCAGCTTCTTAGTAGGAGGAGCCAAATCCAGTGTGGTGACGATATCGGAGTAATCGCTCAACTGGGCACGGATAGTCTTGCTGTCCAACTCCTTCAGGCTGTCGACGATGAGCTTCCTCTTTCTCTTAGCCTTGGTTTCTTTCACTGAGGACATTCACAATTAATATTGATGTGTAAACAAGCTATGAGGCTAAGATTTAAAGGGGTGGTTCATTGCGATTTCACTTTTTTAACTTTAGTTAGTGTGTAATGTTGCTGCTTGAGCATGAACAGTATCTGCAAAGTTACAGCGCTGAAAGTTCAATGCAAACAGAGATATTGTCTTTTAAAGTTATGGCAGTTTAATGTCTACAATTACGACCGGTTTGGACTACAACGAGCTTCTTCCCGGGTTGGTGACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU158093 False 1185 TUCP 0.49 2 234212 235595
TU158094 True 1542 TUCP 0.43 5 234212 237579

Neighbor

gene id symbol gene type direction distance location
CI01000027_00178291_00179467 EXT1B, EXT1A, EXT1, EXTL1 coding downstream 54745 178289 ~ 179471 (-)
CI01000027_00137910_00141799 NA coding downstream 90935 137292 ~ 144599 (-)
CI01000027_00131884_00132650 NA coding downstream 101562 131395 ~ 132650 (-)
CI01000027_00108990_00118237 NA coding downstream 115804 108119 ~ 118408 (-)
CI01000027_00078634_00087807 TAP1 coding downstream 145493 78492 ~ 88719 (-)
CI01000027_00332200_00343377 NA coding upstream 94403 331982 ~ 344039 (-)
CI01000027_00645077_00650763 SLC25A32B, SLC25A32 coding upstream 407415 644241 ~ 651285 (-)
CI01000027_00701871_00719591 COL28A1B coding upstream 464187 701766 ~ 719591 (-)
CI01000027_00742700_00758723 COL28A1B coding upstream 505052 742631 ~ 758723 (-)
CI01000027_00798826_00806532 ICA1 coding upstream 561107 798686 ~ 806532 (-)
G139123 NA non-coding downstream 18111 209732 ~ 216101 (-)
G139138 NA non-coding downstream 88426 145381 ~ 145786 (-)
G139089 NA non-coding downstream 111707 121498 ~ 122505 (-)
G139154 NA non-coding upstream 1094 238673 ~ 239396 (-)
G139155 NA non-coding upstream 1861 239440 ~ 239676 (-)
G139158 NA non-coding upstream 3265 240844 ~ 241126 (-)
G139160 NA non-coding upstream 11544 249123 ~ 249388 (-)
G139167 NA non-coding upstream 16791 254370 ~ 254604 (-)
CI01000027_01241417_01245177 NA other upstream 1007056 1240478 ~ 1246267 (-)
CI01000027_01303308_01319462 NR2F5, NR2F1, NR2F1.L, NR2F2 other upstream 1064455 1302034 ~ 1321178 (-)
CI01000027_02119227_02124423 NA other upstream 1884551 2119131 ~ 2125142 (-)
CI01000027_02226447_02227499 NA other upstream 1989046 2225781 ~ 2227499 (-)
G140118 NA other upstream 3263955 3509352 ~ 3584679 (-)

Expression


Co-expression Network