G139155


Basic Information

Item Value
gene id G139155
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 239440 ~ 239676 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU158137
GGTATGATATATATAAAAATTAATAAGATAAAGTAAAAATATATTATGTGTTGGGGAGGGAAAGTTGTAATTGTATTTTGTGTTGTTAATAAAAAGAGAATTATTTTTAAAATAAAAGAACAGAATCAATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGGGGAGGGAAGTTAATTGTATGTTGTGTTGTTTTAAATAAAAACAGACTTATAATAAAATAATATAGGCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU158137 True 237 lncRNA 0.27 1 239440 239676

Neighbor

gene id symbol gene type direction distance location
CI01000027_00178291_00179467 EXT1B, EXT1A, EXT1, EXTL1 coding downstream 59973 178289 ~ 179471 (-)
CI01000027_00137910_00141799 NA coding downstream 96163 137292 ~ 144599 (-)
CI01000027_00131884_00132650 NA coding downstream 106790 131395 ~ 132650 (-)
CI01000027_00108990_00118237 NA coding downstream 121032 108119 ~ 118408 (-)
CI01000027_00078634_00087807 TAP1 coding downstream 150721 78492 ~ 88719 (-)
CI01000027_00332200_00343377 NA coding upstream 92306 331982 ~ 344039 (-)
CI01000027_00645077_00650763 SLC25A32B, SLC25A32 coding upstream 405318 644241 ~ 651285 (-)
CI01000027_00701871_00719591 COL28A1B coding upstream 462090 701766 ~ 719591 (-)
CI01000027_00742700_00758723 COL28A1B coding upstream 502955 742631 ~ 758723 (-)
CI01000027_00798826_00806532 ICA1 coding upstream 559010 798686 ~ 806532 (-)
G139154 NA non-coding downstream 44 238673 ~ 239396 (-)
G139123 NA non-coding downstream 23339 209732 ~ 216101 (-)
G139138 NA non-coding downstream 93654 145381 ~ 145786 (-)
G139158 NA non-coding upstream 1168 240844 ~ 241126 (-)
G139160 NA non-coding upstream 9447 249123 ~ 249388 (-)
G139167 NA non-coding upstream 14694 254370 ~ 254604 (-)
G139168 NA non-coding upstream 17906 257582 ~ 257809 (-)
G139166 NA non-coding upstream 21724 261400 ~ 613635 (-)
G139117 NA other downstream 1861 234212 ~ 237579 (-)
CI01000027_01241417_01245177 NA other upstream 1004959 1240478 ~ 1246267 (-)
CI01000027_01303308_01319462 NR2F5, NR2F1, NR2F1.L, NR2F2 other upstream 1062358 1302034 ~ 1321178 (-)
CI01000027_02119227_02124423 NA other upstream 1882454 2119131 ~ 2125142 (-)
CI01000027_02226447_02227499 NA other upstream 1986949 2225781 ~ 2227499 (-)
G140118 NA other upstream 3261858 3509352 ~ 3584679 (-)

Expression


Co-expression Network