XLOC_008562 (crybb1l3)


Basic Information

Item Value
gene id XLOC_008562
gene name crybb1l3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 28096152 ~ 28104403 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017095
TTAATCTCTTGTAGATTCGGGCCTTGGGGTCTTCTCCTCTGCCATCGCTCGTCTTGCATTGCTCTGAGCCTGACTGTTTCAGCCATGTCACATACTGCAGTTCAAGGAAGTATGGGAAGTCGCTTTGCCACAGGAAAGAGCTCCCACAGAATATATCTGTTTGAGTATGAGAATTTCCAAGGGCACATGATGGAGCTGAGTGGAGAGTGTCGTAACGTCTGTGACAAGGGGCTGAAGCGCGTGGGCTCCATCAGAGTGGAGTGTGGGCCGTGGGTAGGTTTCGAGCAACAGAACATGGCCGGTGAGATGTTCATGTTGGAGAGGGGTGATTACCCACTCTGGGCCACTTGGTCCAACAGCTACCGTTGTGATCGCCTCATGTCTGTCCGGCCAGTTCGAATGAATCCACAGGACCATAATATCTGTCTGTATGAGTGCATGAACTTTGACGGTCGTAAGATGGAAGTTTCTGATGAGGACATCCCAAGTTTGTGGTGCCATGGCTTCCAGGACAGAGTTGGCAGCATTCAAGTAAATGGTGGAACGTGGGTTGGATATCAGTACCCAGGCTACCGTGGATATCAGTACCTGTTTGAATTTGGATCCTACAAACACTGGAACGAATGGGGTGCCAATCACCCTCAGATCCAGTCTGTTCGCAGAGTGAGAGACATGCAGACGCATCACAGAGGCTGCTTCGAGCTGGCATAAGGAAAGAAATACCATGGACAGATGGACATAACAAGAACCTGcagagtgtaaaaaaaaatccatcataGTCAAAAATGCTGCACGGAATAGATATTACCAATAAGGGATGAACTATCAAGTGACTTTATGTGTTGCTTTGCTTTAATCTCCTATTTAAGCCATTAGTTTATATAAGAATACCATATGAACATGAATAACGAACTGAAGCTGATCTGAACCAGAAGGGATGCAGTTCATTATATACTCAGCTGCTTCTTGATGAAGCTCACTTGTATTATGTGATGATCAGGGCGAATCGGCTAGGAAGTAGATGAAATTATTTATGAAATTGAGGAGATCCTGCTACATTTTACTCTTCATCTTTCTCAGGGATGGATCAGGCTGGCATCTAAAAGACATTTCcaagaaaataaatcaacaaaaataaaGGACTTCAAAGCCCAGTTTTACAATGTCCTTAATTCACTGATCAAAAGCTCAGCTTGAGAGCTTAGAATTCCGGACatgttgttattaaaataaatctttaatattttatgtgTTGTTATTTAAAGTGCATAATAAATGAGACGAGAACAACCA
>TCONS_00017096
GGGGTCTTCTCCTCTGCCATCGCTCGTCTTGCATTGCTCTGAGCCTGACTGTTTCAGCCATGTCACATACTGCAGTTCAAGGAAGTATGGGAAGTCGCTTTGCCACAGGAAAGAGCTCCCACAGATATGAGAATTTCCAAGGGCACATGATGGAGCTGAGTGGAGAGTGTCGTAACGTCTGTGACAAGGGGCTGAAGCGCGTGGGCTCCATCAGAGTGGAGTGTGGGCCGTGGGTAGGTTTCGAGCAACAGAACATGGCCGGTGAGATGTTCATGTTGGAGAGGGGTGATTACCCACTCTGGGCCACTTGGTCCAACAGCTACCGTTGTGATCGCCTCATGTCTGTCCGGCCAGTTCGAATGAATCCACAGGACCATAATATCTGTCTGTATGAGTGCATGAACTTTGACGGTCGTAAGATGGAAGTTTCTGATGAGGACATCCCAAGTTTGTGGTGCCATGGCTTCCAGGACAGAGTTGGCAGCATTCAAGTAAATGGTGGAACGTGGGTTGGATATCAGTACCCAGGCTACCGTGGATATCAGTACCTGTTTGAATTTGGATCCTACAAACACTGGAACGAATGGGGTGCCAATCACCCTCAGATCCAGTCTGTTCGCAGAGTGAGAGACATGCAGACGCATCACAGAGGCTGCTTCGAGCTGGCATAAGGAAAGAAATACCATGGACAGATGGACATAACAAGAACCTGcagagtgtaaaaaaaaatccatcataGTCAAAAATGCTGCACGGAATAGATATTACCAATAAGGGATGAACT

Function

symbol description
crybb1l3 Predicted to be a structural constituent of eye lens. Predicted to be involved in lens development in camera-type eye and visual perception. Is expressed in lens.

GO:

id name namespace
GO:0002088 lens development in camera-type eye biological_process
GO:0007601 visual perception biological_process
GO:0005575 cellular_component cellular_component
GO:0005212 structural constituent of eye lens molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070820-11 Predicted to be a structural constituent of eye lens. Predicted to be involved in lens development in camera-type eye and visual perception. Is expressed in lens.

Ensembl:

ensembl_id ENSDARG00000007655

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017095 False 1293 mRNA 0.43 6 28096152 28104403
TCONS_00017096 True 784 mRNA 0.49 6 28096177 28103934

Neighbor

gene id symbol gene type direction distance location
XLOC_008561 NA coding upstream 236133 27857395 ~ 27860019 (+)
XLOC_008560 NA coding upstream 289783 27803733 ~ 27806369 (+)
XLOC_008559 AL935164.1 coding upstream 301339 27794699 ~ 27794813 (+)
XLOC_008558 NA coding upstream 370490 27710330 ~ 27725662 (+)
XLOC_008557 AL954187.4 coding upstream 526957 27569081 ~ 27569195 (+)
XLOC_008563 unc119a coding downstream 2095 28106498 ~ 28125224 (+)
XLOC_008564 NA coding downstream 56490 28160893 ~ 28163967 (+)
XLOC_008565 slc46a1 coding downstream 71235 28175638 ~ 28186529 (+)
XLOC_008566 vtna coding downstream 97767 28202170 ~ 28208926 (+)
XLOC_008567 NA coding downstream 118028 28222431 ~ 28228434 (+)
XLOC_008463 BX663520.1 misc upstream 6843870 21252191 ~ 21252282 (+)
XLOC_008573 NA non-coding downstream 444223 28548626 ~ 28551677 (+)
XLOC_008574 BX088540.1 non-coding downstream 494244 28598647 ~ 28627902 (+)
XLOC_008583 BX537104.1 non-coding downstream 1057253 29161656 ~ 29271467 (+)

Expression


Co-expression Network