G139166


Basic Information

Item Value
gene id G139166
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 261400 ~ 613635 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU158148
TGGCCAAAAATGTTGTCGCACTGTTTGTCATGTTTCATCACAAATAAAACAGACTCCAAGCATAACTATGCAATATGCTTACGAAATCTCTAACACATTTTAAAGGTGCAGTTTGTAAGTTTTTGACTGTACTAAAGCATAAAAACACCATAATACATTTGCAGATATTTAGGAATCACATACTTGTTTCTCTGAGAAACAATGCTGCAGTTATTCTACTCTGAAACATGCGCTCTGTATCAGAATGTCTGTTTTTGTTTCAGTCTGTGTGACTCCGCCCACAGCCAATTCATCCAATAGTATTGCGACACATCGGGTTGCCAGTTGGTGGAAAACACAACGTGGGTCCGAGATTGCAGATTCTACCAGACCTAAAAAGCCTCGACATCCATCTAAAAAGCTGACCAGAGGCATATTAAAGGGGACATATTATGAAAATCTGACTTTTTCTGTGTTTAAGTGCTATAATCGGGTGCCCGGTGCATATACCAATCCAGAAAACGTGAAAAAGGACAACCCAGTAACTTTGTTTTGGCAAGCCTTTCTCTGCAAGCTTGTGAAAAAATGAGCCGCTCAGATTTCACTCCCCTTGTGACGTAGGAATGGGATCTTATTATAATATTACCACCCCTTAATCTGCACATTTCCACCCACGGCACCGCCGTTTTGTTTTCGCAAGTAAAAACGGTGTACCAGTTCTAACGGCATGGCAAAAGTTGGAGCAAAGCATGCTAACTGTCCTGTCATTGGCTGCACAGACGAGCACTGAACACTATTTAGAGTCTCATTAGCTTGGATAGCCTGCAAGTTGATCCTGACAAGCTCGATTGCTAAAAAAGGAGCATTTCCGTCCGAGCGATATTTTGGAAAAATTAGACCATTCACAGCATTTGATAGCAATCACAAACATTAGCCTGGTATGTATGACTCTGTTTGGCAAACAGCCGTTACTGACAATCCTCATTTTGTCTGCGTGAGATTCTCCAGCTTTGTTGTTGTTGAGCAACCGAAGCGTGAGCTGTTAAAGCTCCGCCCTCTTCTGGAAAGGGGGCCGGGAGCAGCAGCTCATTTGCATTTAAAGGGACACACACAAAAACGGCGTGTTTTTGCTCACACCCAAATAGGGGCAAATTTAACAAGCTATAATAAATGATCTGTGGGGTATTTTGAGCTGAAACTTCACAGACACATTCTGGAGACACCAGAGACTTATATTACATCTTGTGAAAAGGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU158148 True 1233 lncRNA 0.42 2 261400 613635

Neighbor

gene id symbol gene type direction distance location
CI01000027_00178291_00179467 EXT1B, EXT1A, EXT1, EXTL1 coding downstream 81933 178289 ~ 179471 (-)
CI01000027_00137910_00141799 NA coding downstream 118123 137292 ~ 144599 (-)
CI01000027_00131884_00132650 NA coding downstream 128750 131395 ~ 132650 (-)
CI01000027_00108990_00118237 NA coding downstream 142992 108119 ~ 118408 (-)
CI01000027_00078634_00087807 TAP1 coding downstream 172681 78492 ~ 88719 (-)
CI01000027_00645077_00650763 SLC25A32B, SLC25A32 coding upstream 31359 644241 ~ 651285 (-)
CI01000027_00701871_00719591 COL28A1B coding upstream 88131 701766 ~ 719591 (-)
CI01000027_00742700_00758723 COL28A1B coding upstream 128996 742631 ~ 758723 (-)
CI01000027_00798826_00806532 ICA1 coding upstream 185051 798686 ~ 806532 (-)
CI01000027_00808322_00809068 NA coding upstream 194433 808068 ~ 809068 (-)
G139168 NA non-coding downstream 3591 257582 ~ 257809 (-)
G139167 NA non-coding downstream 6796 254370 ~ 254604 (-)
G139160 NA non-coding downstream 12012 249123 ~ 249388 (-)
G139158 NA non-coding downstream 20274 240844 ~ 241126 (-)
G139155 NA non-coding downstream 21724 239440 ~ 239676 (-)
G139294 NA non-coding upstream 7039 620674 ~ 623127 (-)
G139354 NA non-coding upstream 370855 984490 ~ 984744 (-)
G139359 NA non-coding upstream 391534 1005169 ~ 1005411 (-)
G139117 NA other downstream 23821 234212 ~ 237579 (-)
CI01000027_01241417_01245177 NA other upstream 631000 1240478 ~ 1246267 (-)
CI01000027_01303308_01319462 NR2F5, NR2F1, NR2F1.L, NR2F2 other upstream 688399 1302034 ~ 1321178 (-)
CI01000027_02119227_02124423 NA other upstream 1508495 2119131 ~ 2125142 (-)
CI01000027_02226447_02227499 NA other upstream 1612990 2225781 ~ 2227499 (-)
G140118 NA other upstream 2887899 3509352 ~ 3584679 (-)

Expression


Co-expression Network