G138155


Basic Information

Item Value
gene id G138155
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 643621 ~ 645451 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU156941
AAAAAGAATCGTTGAATCAGAGTTTTGAATTGATTCGTTGAAACAGACAGATAAACTGAGTCACAGAAATGAATTGTGAAATGATAAAGAGGCTACATATAAGAATAGGATATACGTCGAACGTCACGTGACCAAACCGGAAAACTGTTCTCATTGCATCCGCTTGTCAGAGAAAGTGTTAACAGCAGTATGAACTGACGGCATATCTATGGACTTTTAAGGTAATTAGCGAATCTGCCTAGTTCACATTGTTATAGGTGTTTTATTCTATTAAATATCTAAACGTTAGTGTGAAGAAGAAAAATTAAAAAAGCTTTTAAATATCAATCTGCATATGTGGGGGACATCAGTTATGCTCATCTTTGACCGCACCTTTTAAGTTATCTTGAATAAAACAGCTAATTTTTCATGAAGCGCATACAAGACCTAAACCGGAGCGATCTAATCTGTTTACAGAAAACGAAAGTTAGATTGCGCATAGCCCCTATTTGTATGTATTATTTGCTTATTGTATTGCCAATGTGTGAACAGTTTGTAACGAAAATTAAAAAAAAAAAAAAAAAAAGAGACCTTCCCCGACTTCCTAAGTTGTCTATATGAAAGCCTGTAGACTGATTTTTATGTGCAGGATGCGGTCCGGTTTTGCCGGGAAAATTCAAACGATGTGACGGTTACGCGCGCTCCCGAGAGCCTCTCTTAGGTTCAAAGCACACGAATGCTTAGTCAGGATAATGCCGAAAGAGCCGCTCTGTACTGTAACAAAGGCTTTATAGAAAGAAGGTGCACTCGGTGTATTATTATGAATGGGATAAAGTATAACGCACAATATGGCGGAATAAGTCCCGCCTTTTAAATAAGAGCCAATCACCAATTGGTAAAGTCATCGTGTCACTGCAGTGGCCGTTGGAAGATCCGGTTCCTCATCTGTTGACATGATGTTGAATCGCTTTCTCACCGCTGTCATTTTTGTTGTGTTTATTTTGTTATTGAGAGGAAAGCACATATTTACATCTAAACATCGCTCTCAGCAGTTCCTTAAAAGTATAATCGCTGCAAAGGTATTTCCAACTTCTTTTTACTTCTAAGCAAAGGACGAAAAAGAACTTCGCTGTTAGTATATCGTTCCATTTAATCACGTGTAGTCTCTTGAACGTTACGTCTGCAAGTCGCTGGCAAGTTCACTTAACGGCCACCGGTGTCGCTAATAGTCCCTTTAAAATCATTGTGATTATGTTGTTTAATTTTATATTGCCAGCAAATTCTTTACAAATATGTCATGGATATTTCACACATTGCCCAGCCCTATAGTAGTTACCACAATTCATCATTATCTCCTCATTAAAAGTGTAAACCTTGTTTTGATTTTTACACTTTTTAATTAGATAAAACAAACAGCCTTTAAGAGAATATAACTTACATCCATTTAAAAAAAAGAAAAGAAAAAAAAGTCACATAATCAATCCCTCATGTCCATATTCACCAGTAGTTTCAGCAGTTTCTGAAGCAGTGACGACACAAATTACACTTTGAACTCCGTGACATCATGCAGTTCAGTTTTCCAGTTGTTTTATTTCTCTCTATTCACAATTATGACTCGTCCGTAGCTGCGAAACACTGTCGCTGACGGGACGACCCATCCCAGGTCCGGCTCTGCTCCATGGCAGACGGTTTGGTCGCAGTCGCACCTGTTCTCAGTTCACTGGTGCCGGTCCAGGAGGAAGCGGGACACATTCTCATAGACCACAAATGTTATGCAGCAGGCCGGAGTGACGCGGATCAGGTTGGGCACCATGCCTTTGTAGAACCCCAACAGGCCCTCGTTTCTGAGCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU156941 True 1831 lncRNA 0.40 1 643621 645451

Neighbor

gene id symbol gene type direction distance location
CI01000027_00637372_00642483 CTHRC1B, CTHRC1, CTHRC1A coding upstream 979 637372 ~ 642642 (+)
CI01000027_00527282_00534071 NA coding upstream 108566 526867 ~ 535055 (+)
CI01000027_00505199_00523652 NA coding upstream 119969 504270 ~ 523652 (+)
CI01000027_00391159_00499309 CSMD3 coding upstream 143861 390683 ~ 499760 (+)
CI01000027_00365674_00371897 CSMD3 coding upstream 271625 364990 ~ 371996 (+)
CI01000027_00681087_00701456 NA coding downstream 35636 681087 ~ 701956 (+)
CI01000027_00738809_00739296 NA coding downstream 92553 738004 ~ 740394 (+)
CI01000027_00765527_00776450 MIOS coding downstream 120016 765467 ~ 776763 (+)
CI01000027_00779517_00795032 NA coding downstream 133503 778954 ~ 795389 (+)
CI01000027_00909268_00918831 NA coding downstream 263062 908513 ~ 919213 (+)
G138115 NA non-coding upstream 396039 245883 ~ 247582 (+)
G138114 NA non-coding upstream 398313 244016 ~ 245308 (+)
CI01000027_00238851_00240657 NA non-coding upstream 402836 238851 ~ 240991 (+)
G138107 NA non-coding upstream 424991 218387 ~ 218630 (+)
G138106 NA non-coding upstream 425277 218123 ~ 218344 (+)
G138207 NA non-coding downstream 28200 673651 ~ 718459 (+)
G138229 NA non-coding downstream 164206 809657 ~ 809941 (+)
G138233 NA non-coding downstream 169130 814581 ~ 814806 (+)
G138234 NA non-coding downstream 170543 815994 ~ 821269 (+)
G138030 NA other upstream 543364 39146 ~ 100257 (+)
G138238 NA other downstream 184323 829774 ~ 831683 (+)
G138247 NA other downstream 209937 855388 ~ 893121 (+)
G138290 NA other downstream 350519 995970 ~ 999181 (+)
G138436 NA other downstream 861510 1506961 ~ 1507816 (+)
G138515 NA other downstream 1018957 1664408 ~ 1676860 (+)

Expression


Co-expression Network