G138247


Basic Information

Item Value
gene id G138247
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 855388 ~ 893121 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU157065
CTTTGCTCATGGAAACAAATGATACAGTAATACCTCAATCCTTCCAGGGATCGAACCAGCAACCTCCTGAGTTCAAACCACAGTGTTAATGATGCATATGTCCTAATTACCCACGAGAGCTCTCCTTCGTGTACGGACCCCTACGCAGTCCGAGCTGCAAGGAGAGAACTTGGACCAGTTGGAGAGCTGGCAGTCGTCTCGGCACGGTAACTGGCAGGGCTGGCTCATAACAGGCATACTGCTGGCAAACTTCAGACACTGCACAACATCAGCCACTGTACCATCCAGCTGCCTACATGAGATAGCTCTAGTTTGGACTCCAGCTCCACAGTTCTCCTGAGCTCCTTTACTGTCTCTGCGGATGCTCCATGGGACCAGCTGACATTTACGCCACTTGTGTGTTTTCCACCTGTAACCCGGACAGACAGATGGAGTTGCACAGTCTTTCTCTTCATAAAGGACGTCCGGACACTCCTGACCTCCATTAGCTGGCATCTGGATGACCACTCGATATCGAAACTGTTTATTCTTCTGCCCGTTCACACCTGCTTCACAGGATGTGGGACACTCTGTCCATTCACTGAAGGGTGTCACTATACAGTCTCTCTTACAGGGCAGCAGACAGGGTCGTACTGACTCTGGCCGAGGGGCTTCAGGACATTTTTTGGGTGGCACCTGTCCGACATTGACCTTTACGCAGATGACCTTGCGCGTTTGCACGCCCATTGTGCAGGTGGACTTGTCTGCGCTGGAGGAGGTATTGAGGGTGGATGTGGTGGTGTCCTCCACGCACTGTCCCCAGGGGCCCGTCTGCCAGTGATACACGATGCAAGGATGCTCATTACAGTTCCGCACCTCCTGTAGGGCGCTGGTGTTCGGACAGCTGGAACCTCCTGCAAGAGTGTGAAGACATGCATTAGGTCTGACACGTGTCTACACCAGACGTGTCGGGCGTCTTGTCACGCTACGACAGCTTGAGGTTCTTCACACTAGAAGCGTTGAAGCAGCATGTCAACTCAGGAGAAGACTTCAGCTACAGTAAAATGAAAGTGAAGTCCATTGAAAATAACAAAAAAACAACCAGACATACACCATCCTTCTATAAGATAAATCTCTTATGCTCATCAATGCATTTATTTGATCAAAAATACAGTTAAAACAGCAATATTGTGAAATATTAATACAATTTCTAAATAACAGCTACAGCAGCTACATAAATTTATCCACTAACCATTCAGAGACGTCTAGATTCATTCTAAAAGTTGTAACTTCTTCCTGAGTCTCTCCATCAGTGTCGACTCCGGTTTGAACAATGTAAGGCTGAACACCGTTACTGACAATCATCATTTTGGCTGTGTGAGATTTTCCAGCTTTGTTGTTGTTGAGCAACCGAAGCATGAGCTGTTAAAGCTCCACCCTCTTCTTGAAAGCAGCAGCTCATTTGCATTTAAAGGGACACACACAAAAACTGTTTTTTCTCACACCCAAATAGGGGCAAATTTGACAAGCTTTAATAAATTATCTTTGGGGTATTTTGAGCTGAAACTTCACAGGCACATTCTGGGGACACCAGAGACTTATATTAAATCTTGTAAAAGGGGCATAATAGGTCCCTTTAAAAAAGTGAAATGTTTTCAGTTCAAATATTCACAGCTTAAATATACAGTACAATCATGTTGAATTTCAGCCCCCTAAAAATGCAAGCCCTGAAAATACAATGTATTAAAATGCAAGCACTGTTAATGCAATGCATTTTTTATATTAGTGCAATTCAACATGCTTTTTTGACCCCAAACCGTGAACAATAGTGTATATTAAAATCTTTGCATAGGTTATTTTAGTACAGCAAATGCATACGAAGACCTTATTTATTACATGTTTTTTTTTTTCTTTCTAGCTTGCATCCTTTGGAGCGAGACAGGTCAAGTGTTCATTTTCTCAAATCTCAACATAACAGCAACGTCTCCAGTTGCTTAAACTTGTTCTAAATTGATTTAGACGAAACACTCCACATAATTGCCGCCTCCTAATTCCTCACAAGTGGCAGAAAGTCGATGCAGTCGGTGGAGAGCGGCGCGGTGTGTCTAAATAATTGCTGACATTTACAGGTTTGCAGATGACAGAGCAGCCCAGTGGGCCTGTGAATCAAAGCAAGAGCGTTACGAGAGGAAGTGAGCGCATACGACTGCCTGCTTTAACTTTATAACATGCACAGTATTAAAGTTATTGGCTTTGACTGTCAGATCCATTACATTGGTGATTATTATGTTTCCATTGGGCAAGGGTAATAATAGGGTTTTTCACACTATGGGCCAGATTTACGAACAGCTTAACCTCTTTTGGCATTGAAAAACTACTAAAAAAAATGGCCTGTCAGGATTTACTAAAAACACACAGTGAGAAATTAGCACTGAAAAGGCATGGACACAGTTATTTTTGTGGTTGACCACAAATTATTGCATTTGCAGGAGTTTCCCTTTCAGACGCAATATTTATGGGAGGAGAGTATTTACAGTAAATGAATAAAGCAACATGATTTACTAAGGTTTGAACTAGTCAGTTTACTAGTATTTGCGGCATTATTTAACACCCCAAAAAAGCATGTCTTTAAGCCACTTTGCGCCTAAGTTGTTAGATCACACGCACCTGATTATCATCGGCTTTGCTTGTTTGTGACTCTACAAAAATTTGCGCTGCTCTTTGCTATTTTGGAAATTATCTGGCTGTGATCTTTAAAGGATTAGATCCCTTCAGAAT
>TU157064
GGACGGATGGACAAACAGACAGATAGATAGACAGAATGATAGATATATAGACAGAAAGACAGACAGACAGACAGACAGACAGACAGACAGATAGATAGATAGATAGATAGATAGATAGATAGATAGACAGAAGGAACGGTAGACAGAACAGTAAATAGACAGATAGATAAATAGAATGATAGAATACCTGCTTCACAGGATGTGGGACACTCTGTCCATTCACTGAAGGGTGTCACTATACAGTCTCTCTTACAGGGCAGCAGACAGGGTCGTACTGACTCTGGCCGAGGGGCTTCAGGACATTTTTTGGGTGGCACCTGTCCGACATTGACCTTTACGCAGATGACCTTGCGCGTTTGCACGCCCATTGTGCAGGTGGACTTGTCTGCGCTGGAGGAGGTATTGAGGGTGGATGTGGTGGTGTCCTCCACGCACTGTCCCCAGGGGCCCGTCTGCCAGTGATACACGATGCAAGGATGCTCATTACAGTTCCGCACCTCCTGTAGGGCGCTGGTGTTCGGACAGCTGGAACCTCCTTCTCCTGCATTGTAAGCCAGAATGGCTCTGGTTCTCATCTGCTTGCCCTCGGCGGTTTTGCTGGAGCAGGTCTGGGAGCAGGTGGACCATTCAGTCCAGAGACTGAGAGCACAGTCTTTAGGGCAGGGAACCATACAGGGCACAGATGCAGGGTAGACCTCATCCGCACACATCTCCCTCTCCACCTCTGTACCTTCATTGTTGACGCAGCGGACCTGTGGAATCTGAGTTCCCTCTCCGCAGTCCATGTCTTCTTCAGGGATACACTCCTCTAGCTTGACCAGCTGCCAGTTAAAACAGCTGGGATCATCGCACGGGATGGCCTCCACCAGGTGAGGACAGCTCCCCTCACCACCCGTGGGGTCATTAGTTATTGTACGTCGTCTGAACTTGAAACCT
>TU157066
TTACAGAAGTAAAATGGGTTGTAAACTGTGTTTGACTGACTTGAACACCATCTACCTCAGTGGCTCACTCATGTAAACTGACACTAAACCTTGCTGGAACAGATAAAGTGGATTTAAGAGTTTTGGAACACTGATTCGCGGTGATGTCACAGCACATCGCTGCGAGAGCGAGGAGCCATCCATCAGAATCTCAGACGGTTTTAGGTTGAGAAATTCTGCCCTTGTGTGAGTCTTTCCTTGACAGTCTCCTGTCAGCTTTTTAAGGCTAATCTCATGCACTACAGACCATAGAAAATCACAAGTTTTTTGCATGTCATCTTGTCACAGTGGCCCAGAAAAGTAATTAGACACTTAAGTCACACTTTAAAATGTATGAAGGTCATTGTATCAGATACAAAATATCCCTGAACATGGCATACGCAAATATATAATGCTGGGACTTTACTCAGAACTAACTTCACTTTTCTGAGCCATATTTGCATGTTCAACTAATATTCCATTTACCATATACTTTTTGTCTTCTTTATTTATGATTTCAAACCTATTAAACATCTTTTGTGAAATATTTAGCTTGTAAAGTTTCATTACGATAAATGCTGTTTACTCTAATGTAAATGACATTTTTATAGCATTACTTAAGTGTCCAAATACTTTTTGGAGCCACTGTATATTAAGCCTTAATATTAAGTTTCTCTTTAAGTATAATTAAAACAAAAACAAATGCTCTGTTCCTAACGATAGTGAACTGTCTATTTAGACAGTATTTTATAGCATCATAGGGATCATTTAGCTGGCTTCAAAGATAAATTTTGGCCAAATTTAAAGATACAATGTGTAAATTTTAGCGGCATCTAGCGGTGAGGTTGTGAACTGCAACTAACGGCGCGCACCCCTCCCTTTCGGAGAAGCTACGGTGGCCGTCTGGCCGACACAAGACAAAGATGTCGTCATCTGAGACAGCAGAGAATAGCCTGTGTGAAGCAATGAGTTTTCTTCTTACTTCTAACAAAGAACGGTCTCTGCTTCTAATAAACCAGACGACTACTACTACTACTTTGTGCGTATTCAACGTAGTGACGATGCAAGCTGCCTCTAAAAACACGAACGATTTAGAAGAACAACAACATAGTGACTAAACACGCTCTGTAGAGTGTCCATTTAGGGCTGCTGTAGAAACATGTCGGCGCATAATGGCGACTTGACATGGAGGGGGGACCCGCGGTGTTTGAGATAGAAATGGCTCATTCTAAGGTAATAAAAACATAACGGTTCATTGTGTAAGGTCTTTATACACCACTGAAAACATAGTTATGTATATTATATTGCATTTCTGTCAATAGATCCTCCTAAAATTTTACACATTGCACCTTTAAGGCATTATTGCACATATCCTTTGTGGTGAAGGCAATAAATAATAGGCAATAAATCAAATTTGGTGGAGAAAGCAAGAAAATCAATTTTTATCAATTTTACTGGGTATAATATGGGTATAATATGTCACAGTTTACTTTATTTTGCTATCCTCACTTACATAAATGAACTATAGTGTACTAGTAAAAATATATAAAAAATATCTGAGTAATTTTTGGTTTGACTGTATATATATATATATATTTATTGAGTGAGTTTAGCACTGCTGAAATGAGAACATGCAAGTACCCATGTAATATCTTCTGTACCTTCTCCTGCATTGTAAGCCAGAATGGCTCTGGTTCTCATCTGCTTGCCCTCGGCGGTTTTGCTGGAGCAGGTCTGGGAGCAGGTGGACCATTCAGTCCAGAGACTGAGAGCACAGTCTTTAGGGCAGGGAACCATACAGGGCACAGATGCAGGGTAGACCTCATCCGCACACATCTCCCTCTCCACCTCTGTACCTTCATTGTTGACGCAGCGGACCTGTGGAATCTGAGTTCCCTCTCCGCAGTCCATGTCTTCTTCAGGGATACACTCCTCTAGCTTGACCAGCTGCCAGTTAAAACAGCTGGGATCATCGCACGGGATGGCCTCCACCAGGTGAGGACAGCTCCCCTCACCACCCGTGGGGTCATTAGTTATTGTACGTCGTCTGAACTTGAAACCTTTCTTCACAACCCGTTCATCACAATTCTCAAAGGTGCAGGGCCCCCAGGCGCCCCACGGGGACAGTTCACACTCCACAGGGCACGGGATGTGACACAGCTGCGTGGTACTTGGAGACGTTCCCTTGCAGAGCCGAATGTCTACGGGTTGTGATGCTGAGATCTCAAAGGTGATAGACAGGAGAGGAGGGACACTAGGCGTCTGGCCATTTGGAGACTGACCTTCTTGTTTGTCTTTGTTGTTATTGATGTAACTGAGAAGTTCTGCATTGGCCTGGACACAGTACACTTCCCTGCTCTGCACACCTCCACCACACAGTCCAGTCTGATTCCCACGCCGCCGGTCCTGCTGGCTGAGAAGCGCGTCAACGCGACATTCACTCCATTCTGTGGTCCTCCAGGCATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU157065 False 2757 TUCP 0.43 5 855388 869575
TU157064 False 936 lncRNA 0.52 4 859342 883513
TU157066 True 2484 lncRNA 0.42 5 876369 893121

Neighbor

gene id symbol gene type direction distance location
CI01000027_00779517_00795032 NA coding upstream 63953 778954 ~ 795389 (+)
CI01000027_00765527_00776450 MIOS coding upstream 82579 765467 ~ 776763 (+)
CI01000027_00738809_00739296 NA coding upstream 118948 738004 ~ 740394 (+)
CI01000027_00681087_00701456 NA coding upstream 157795 681087 ~ 701956 (+)
CI01000027_00637372_00642483 CTHRC1B, CTHRC1, CTHRC1A coding upstream 216700 637372 ~ 642642 (+)
CI01000027_00909268_00918831 NA coding downstream 15392 908513 ~ 919213 (+)
CI01000027_00949578_00953698 NA coding downstream 55600 948721 ~ 954281 (+)
CI01000027_00980123_00987611 NA coding downstream 86034 979155 ~ 987884 (+)
CI01000027_01033975_01037549 NA coding downstream 139782 1032903 ~ 1037922 (+)
CI01000027_01045587_01050470 MEX3A coding downstream 150271 1043392 ~ 1050863 (+)
G138234 NA non-coding upstream 38073 815994 ~ 821269 (+)
G138233 NA non-coding upstream 44536 814581 ~ 814806 (+)
G138229 NA non-coding upstream 49401 809657 ~ 809941 (+)
G138207 NA non-coding upstream 140883 673651 ~ 718459 (+)
G138267 NA non-coding downstream 40622 933743 ~ 934498 (+)
G138277 NA non-coding downstream 75820 968941 ~ 969167 (+)
G138300 NA non-coding downstream 91336 984457 ~ 984699 (+)
G138309 NA non-coding downstream 110872 1003993 ~ 1004346 (+)
G138311 NA non-coding downstream 119756 1012877 ~ 1013154 (+)
G138238 NA other upstream 27659 829774 ~ 831683 (+)
CI01000027_00391159_00499309 CSMD3 other upstream 430666 390683 ~ 499760 (+)
G138030 NA other upstream 759085 39146 ~ 100257 (+)
G138290 NA other downstream 102849 995970 ~ 999181 (+)
G138436 NA other downstream 613840 1506961 ~ 1507816 (+)
G138515 NA other downstream 771287 1664408 ~ 1676860 (+)
G138915 NA other downstream 2591266 3484387 ~ 3486647 (+)
G138953 NA other downstream 2608951 3502072 ~ 3520065 (+)

Expression


Co-expression Network