G139382


Basic Information

Item Value
gene id G139382
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 1108550 ~ 1108876 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU158382
TGTTGTTCTAGAACTAGGATATACCTTTCAGCATTGATGGTGCCTTTCCAGATGTGTAAGCTGCCCATGCCACACGCACTCATGCAACCCCATACCATCAGAGATGCAGGCTTCTGAACTGAGCGCTGATAACAACTTGGGTTGTCCTTGTCCTCTTTAGTCCGGATGACATGGCGTCCCAATTTTCCAAAAAGAACTTCAAATTTTGATTCGTCTGACCACAGAACAGTTTTCCACTTTGCCACAGTCCATTTTAAATGAGCCTTGGCCCAGAGAAAACGCCTGCGCTTCTGGATCGTGTTTAGATATGGCTTCTTTTTTGACCTA
>TU158380
TGTTGTTCTAGAACTAGGATATACCTTTCAGCATTGATGGTGCCTTTCCAGATGTGTAAGCTGCCCATGCCACACGCACTCATGCAACCCCATACCATCAGAGATGCAGGCTTCTGAACTGAGCGCTGATAACAACTTGGGTTGTCCTTGTCCTCTTTAGTCCGGATGACATGGCGTCCCAATTTTCCAAAAAGAACTTCAAATTTTGATTCGTCTGACCACAGAACAGTTTTCCACTTTGCCACAGTCCATTTTAAATGAGCCTTGGCCCAGAGAAAACGCCTGCGCTTCTGGATCGTGTTTAGATATGGCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU158382 False 327 lncRNA 0.45 1 1108550 1108876
TU158380 True 313 lncRNA 0.46 1 1108564 1108876

Neighbor

gene id symbol gene type direction distance location
CI01000027_01082314_01087880 UBQL4, XDRP1, UBQLN1, UBQLN4 coding downstream 19946 1081949 ~ 1088604 (-)
CI01000027_01078554_01079951 MAPIP, ROBLD3-PS1, LAMTOR2.L, LAMTOR2.S, LAMTOR2 coding downstream 28599 1078436 ~ 1079951 (-)
CI01000027_01072444_01076227 RAB25B, RAB25, RAA2A, RAB25A coding downstream 32323 1072015 ~ 1076227 (-)
CI01000027_01059994_01067301 RAB11A, RAB11AL, RAB25, RB11A coding downstream 41189 1058928 ~ 1067361 (-)
CI01000027_00823197_00901936 THSD7AA, THSD7A coding downstream 206614 822225 ~ 901936 (-)
CI01000027_01111716_01114630 NA coding upstream 2802 1111678 ~ 1115560 (-)
CI01000027_01198110_01199285 RPZ4 coding upstream 88614 1197490 ~ 1200933 (-)
CI01000027_01204940_01206121 RPZ5 coding upstream 95593 1204469 ~ 1206319 (-)
CI01000027_01232167_01232844 NA coding upstream 122681 1231557 ~ 1234381 (-)
CI01000027_01241417_01245177 NA coding upstream 132461 1240478 ~ 1246267 (-)
G139373 NA non-coding downstream 64171 1044041 ~ 1044379 (-)
G139364 NA non-coding downstream 78675 1028269 ~ 1029875 (-)
G139360 NA non-coding downstream 101128 1007194 ~ 1007422 (-)
G139359 NA non-coding downstream 103139 1005169 ~ 1005411 (-)
G139405 NA non-coding upstream 51170 1160046 ~ 1160265 (-)
G139406 NA non-coding upstream 51516 1160392 ~ 1160644 (-)
G139409 NA non-coding upstream 101370 1210246 ~ 1210464 (-)
G139410 NA non-coding upstream 102509 1211385 ~ 1211600 (-)
G139412 NA non-coding upstream 107994 1216870 ~ 1217069 (-)
G139117 NA other downstream 870971 234212 ~ 237579 (-)
CI01000027_00131884_00132650 NA other downstream 974748 131395 ~ 132650 (-)
CI01000027_00108990_00118237 NA other downstream 990247 108119 ~ 118408 (-)
CI01000027_01303308_01319462 NR2F5, NR2F1, NR2F1.L, NR2F2 other upstream 193158 1302034 ~ 1321178 (-)
CI01000027_02119227_02124423 NA other upstream 1013254 2119131 ~ 2125142 (-)
CI01000027_02226447_02227499 NA other upstream 1117749 2225781 ~ 2227499 (-)
G140118 NA other upstream 2392658 3509352 ~ 3584679 (-)

Expression


Co-expression Network