G139412


Basic Information

Item Value
gene id G139412
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 1216870 ~ 1217069 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU158419
CAAAAAGCAGAACATTTGGCAATCTTTGCTGCAGTTTTCTTAAAAAAAATGCACTGAAAAAAAAAAAGGAAAAACAATTACTTGTCATGTCAAACTACCACAAGCAAACATATGTGCAACTTGAAAGTGACGACCCTTTTGACTAAAGTACACAGTGAAAACTTACAGGAACTGGCTAAACAAACAGGGTCATATGGGAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU158419 True 200 lncRNA 0.36 1 1216870 1217069

Neighbor

gene id symbol gene type direction distance location
CI01000027_01204940_01206121 RPZ5 coding downstream 10551 1204469 ~ 1206319 (-)
CI01000027_01198110_01199285 RPZ4 coding downstream 15937 1197490 ~ 1200933 (-)
CI01000027_01111716_01114630 NA coding downstream 101310 1111678 ~ 1115560 (-)
CI01000027_01082314_01087880 UBQL4, XDRP1, UBQLN1, UBQLN4 coding downstream 128266 1081949 ~ 1088604 (-)
CI01000027_01078554_01079951 MAPIP, ROBLD3-PS1, LAMTOR2.L, LAMTOR2.S, LAMTOR2 coding downstream 136919 1078436 ~ 1079951 (-)
CI01000027_01232167_01232844 NA coding upstream 14488 1231557 ~ 1234381 (-)
CI01000027_01241417_01245177 NA coding upstream 24268 1240478 ~ 1246267 (-)
CI01000027_01249889_01250572 RPZ coding upstream 32393 1249462 ~ 1250579 (-)
CI01000027_01254220_01254900 NA coding upstream 37060 1254129 ~ 1254951 (-)
CI01000027_01289962_01294748 NA coding upstream 72791 1289860 ~ 1294815 (-)
G139410 NA non-coding downstream 5270 1211385 ~ 1211600 (-)
G139409 NA non-coding downstream 6406 1210246 ~ 1210464 (-)
G139406 NA non-coding downstream 56226 1160392 ~ 1160644 (-)
G139405 NA non-coding downstream 56605 1160046 ~ 1160265 (-)
G139382 NA non-coding downstream 107994 1108550 ~ 1108876 (-)
G139424 NA non-coding upstream 24734 1241803 ~ 1243713 (-)
G139432 NA non-coding upstream 59221 1276290 ~ 1276490 (-)
G139436 NA non-coding upstream 79451 1296520 ~ 1298787 (-)
G139443 NA non-coding upstream 107857 1324926 ~ 1325261 (-)
G139117 NA other downstream 979291 234212 ~ 237579 (-)
CI01000027_00131884_00132650 NA other downstream 1083068 131395 ~ 132650 (-)
CI01000027_00108990_00118237 NA other downstream 1098567 108119 ~ 118408 (-)
CI01000027_01303308_01319462 NR2F5, NR2F1, NR2F1.L, NR2F2 other upstream 84965 1302034 ~ 1321178 (-)
CI01000027_02119227_02124423 NA other upstream 905061 2119131 ~ 2125142 (-)
CI01000027_02226447_02227499 NA other upstream 1009556 2225781 ~ 2227499 (-)
G140118 NA other upstream 2284465 3509352 ~ 3584679 (-)

Expression


Co-expression Network