G139424


Basic Information

Item Value
gene id G139424
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 1241803 ~ 1243713 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU158445
NNNNGCTGTCGTAGAGCATCTGGAGCAGCAGTTAGCAGGGTTTCTGGTTCATGCCATCAGTCGTCACAAGGAGAGCTTTGCTGTGTCCAGTTTTCCTGAAGAGTGTCACTACTGGGACAAACACAAGAATGTGAATGTCTGTGTGCATGCAGAGGAGATTTAGAAAGGTTAAAAAGGCTCATTAGTCATTTACCCAGCTAACAGGGAATGTTCTCAGAACGTTCTGGCAATGTTCTCTCAAAGTTATGAACAAATGTTCTTCCAGGAATGTTGATAGAACGTTTGTTTAAAGTCAACTGGTCTTTAATAATGTTTTCAAAATATTAGCTCAAAAACATTATCTATACACGCTAAAAAAATATATATATATAAAAAAAAAAAAATGCTGGGTTAAAAACAACCCAAGTTGGGTTGAAAATGGACAAACCCAGAAATTGGGTTGTTTTAACCCAGCGGTTGGGTTAAATGTTTGCCCAACCTGTTGGGTAGTTTTACATTTTATTTAATTTTTTAGAGTGTACATCATTCATGGAATGTTTTTTTTTTCCTGAAACATTTTAGTTGGCTGTTCGTGTAATGTTTACTACTTATGTTCAGAAAACATTCAAAAGTAAGTTTTCAGAATAAAATGGAATGTTTCCTTAAAGTTTACATAACCAAGAAAAAACGTTTTTAAAACATTTTTAAAAATTGACATTTTGGGCGATCAGAGAACATTCAGACATCATTTTTTCGTCACTTAATAGGGAACGTTAGCAAAATGTTCTTAGAACACATTTTTGTTAGCTGGGTATACAGTATTTCACAGTATTTTAAATCACACTAAATATAAAAATCTACTATAACTGCACCTTATTTATCTATGATATATGCCTTGAAAAATAGTATTTATTTGGCATTGTTCAATGTCAGCTAATTGTGTCTAACAAATCTAATTATTGCATTTATTGTAATTCTTCACTTCATTTTCTTTGTTCTAAAATGAAACCAAAGTGATTTTTCAAACTAACTAGCTTAACTAACCAGCCCATCTGTGTATGCACTTTTCTAAGCATTATATCACGTTTTAAACATTTTTTTATTTTATGCTTTAAATGTGTAAATGTCTGAAATCATGCATTTAAACAATATCATTCTAAAAACAAAGCTGTGTAGTTGTGTGAAAAGGTAGGGAAAATGGCTTTTGTGCCAAGTACACTGTATTTAAACAGTGCCAGGACTGGCAGTTTGGTCTTTGTGAGAATGACCTACATAGAGCCAACAGAGAAAAAAAATGCCCTATCAACCATGAAAAGAAGCAGTGAAGTCATCTCACGAAACAAGTCCAGTTGTCTTGCCTCAGCACACTGAGCAAAATAAGAACATTTGCAAAATGCATACGTTTCCAAGAAATATTTTGGAATCAATTTCCAACATCCACTGCTGTGATATACCACCCGCCACATTTAATTAAATAACTGTTTTTGTACCCAAGTCAGCATTTTCTGGCCAGCGGCTGCAGAAACATGGAGAGTGACGTTTCACTTAGTTAATATAAAGCCGACGAGCTCCAAAGTGCTGTGATCAGCTCTCCGGATGCAGTCATTAAAATCACTGAGGTGCCGAGTGAAAGATCAATCCATCATTTAACACCCAAGAGGGAGAATTATATTTCCATTGTATTCTTGTATTTTATTCTGTTTCTATTGTGAGATGATGCTAAAACAAATATTGTAAATTCATTCTGTACTCAAAATCACAAGGAATCAAAATAATACTGAAAATAAACAATGTTATTAGAGGCCTAATTTGACCCTCTGGAACAAGATCTTTAAAAGCCATTTATAACCATTCAAGTTGCGACCTTACACCCAAAACCACCATGGGTGATGACCTTTGACCTCTACACACATAATCCAATATGACTGTCCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU158445 True 1911 lncRNA 0.34 1 1241803 1243713

Neighbor

gene id symbol gene type direction distance location
CI01000027_01232167_01232844 NA coding downstream 7422 1231557 ~ 1234381 (-)
CI01000027_01204940_01206121 RPZ5 coding downstream 35484 1204469 ~ 1206319 (-)
CI01000027_01198110_01199285 RPZ4 coding downstream 40870 1197490 ~ 1200933 (-)
CI01000027_01111716_01114630 NA coding downstream 126243 1111678 ~ 1115560 (-)
CI01000027_01082314_01087880 UBQL4, XDRP1, UBQLN1, UBQLN4 coding downstream 153199 1081949 ~ 1088604 (-)
CI01000027_01249889_01250572 RPZ coding upstream 5749 1249462 ~ 1250579 (-)
CI01000027_01254220_01254900 NA coding upstream 10416 1254129 ~ 1254951 (-)
CI01000027_01289962_01294748 NA coding upstream 46147 1289860 ~ 1294815 (-)
CI01000027_01303308_01319462 NR2F5, NR2F1, NR2F1.L, NR2F2 coding upstream 59146 1302034 ~ 1321178 (-)
CI01000027_01327656_01344105 NA coding upstream 83913 1327626 ~ 1344848 (-)
CI01000027_01241417_01245177 NA non-coding downstream 164 1240478 ~ 1246267 (-)
G139412 NA non-coding downstream 24734 1216870 ~ 1217069 (-)
G139410 NA non-coding downstream 30203 1211385 ~ 1211600 (-)
G139409 NA non-coding downstream 31339 1210246 ~ 1210464 (-)
G139406 NA non-coding downstream 81159 1160392 ~ 1160644 (-)
G139432 NA non-coding upstream 32577 1276290 ~ 1276490 (-)
G139436 NA non-coding upstream 52807 1296520 ~ 1298787 (-)
G139443 NA non-coding upstream 81213 1324926 ~ 1325261 (-)
G139514 NA non-coding upstream 89599 1333312 ~ 1333538 (-)
G139457 NA non-coding upstream 217467 1461180 ~ 1462825 (-)
G139117 NA other downstream 1004224 234212 ~ 237579 (-)
CI01000027_00131884_00132650 NA other downstream 1108001 131395 ~ 132650 (-)
CI01000027_00108990_00118237 NA other downstream 1123500 108119 ~ 118408 (-)
CI01000027_02119227_02124423 NA other upstream 878417 2119131 ~ 2125142 (-)
CI01000027_02226447_02227499 NA other upstream 982912 2225781 ~ 2227499 (-)
G140118 NA other upstream 2257821 3509352 ~ 3584679 (-)

Expression


Co-expression Network