G138430


Basic Information

Item Value
gene id G138430
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 1461181 ~ 1462819 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU157275
GGTGCAAAAAGAAAAGAAAAATAAAATAAAACTAACATAAAAATCAGATGTTCTTTCCACCTAGATTGCACTGTCACACAGCCTGGGGTCACCTCTCAAACAAGGAGAAAGGTACAACGGCTGAAAACAAACACAAATTGCCCAATTAGCCAGAAGTAATGCACAAATATGATTAGATAAATTGCATCTGCCAGTTCTGTACATGCAACAGTTTCAGTCTCATGCAAATTCGAGAATGCTGATGACTGTAGCTCTGTCACATCCATGAAAACATACCATATAAAAATAGTAAGTAAGCTACTTCATAACAAAACAAAGCCCACTGTATTAAATAAGAGAATTTAGTGTGTGAAATCTGATGGTGGATGCCACCACCATCATTAAAAAATGTACTCAAAATGTGATTAAGTAGCATAATTCGCTTCAAAATAGAAATTAGGAAACTTCAGGAGGCCCGTCTGTTTGACAACTAGCCATGTAAGAAAGAACATCCTAGTTTCAGAAACTAAACATCCCAGTCTTTTGAAAAATCTTACTACAAATATATATTTTCAAATCAAACCTTGTCAGATCACTGATGGAGAAATTAGTTTGTTCACAAGAAACTCTCTGATTTAAGAGGCTTCTCTTGTCAGACAGCGCCGTACGCACCAGAATACTGACTCCACCACCAAATCAGCTGACTTCAACTCAGGGTACGGTCCTACAGCATACATTCGTATCTTTAAAAAACACTGTAAAACTGCTTTTGATTTACAAAAATAACTTGAACGTATTTATACTTTTTTTTTTTTTTTATTTCTTAATACAAAAATGTTTGCACTCTTATTGAAGTCCAACGCTCTGGGTGGCTGAATGACCATTCCATTTGTCAAATAAATGAATCCGTTAAAACGCAAACTACAAGTACACTGGAAGGAGAACAAACTCCTACGGAGAGAGTAGCTGTCATTTCACTGACAATTTCCTCTTGTTTGTGCCTTAAAGCTGCAATATGTTTGCAAAAGCACAATTTACCAGACGCGCACACACACACACACACACACACACACACACACACACACACACGCTGAATTCCTTTTTGTGACTTAGCAGTGTGGAAATCTGGGTAAATGGTATATACCTTACATAAGACCAAAAAAAAGTTAATTGCTTGCATTTTATATTCAAATGTGCCTGACCAAATGAAAAAAAAAAAAAAAAACTTTCTGAATCATAAAGCAGCAGCAGCAGCGTACTCTTTGTCCCTTATTTACACTGAAAATGTGAGCCAGTCTCAAAAGGTCACTAGGGAGGCACTGATGTAGAAATAATGAAAACGAAACCTAAACAAGTGTGCCATCTATTGGTTATACGAGTGAATAACATGTCAAAAATATCTTTCATTTGGGAAGAAAAAAAATGAAACTATCAACCCTCTATGTTCTTATCTTGCTGGACAATATTAGGAAATTTAGTGCTTTAAAAAATGAAATTAATCTACACTTCAAAAACATGGGAGATACCATATAAAGAGGTATGTTGAAATTGTTAGGATACTAGCCTGGCATATTTTTAAAGGGTTAGTTCACCCAAAAATGAAATTTCTGTCATTATTTACTCAACCTCATGTCGTTCCACACCCATAAGACCTTCGTTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU157275 True 1639 lncRNA 0.36 1 1461181 1462819

Neighbor

gene id symbol gene type direction distance location
CI01000027_01413155_01416305 NA coding upstream 43523 1413101 ~ 1417658 (+)
CI01000027_01176638_01185141 NA coding upstream 275874 1175836 ~ 1185307 (+)
CI01000027_01162273_01168513 NA coding upstream 292524 1162273 ~ 1168657 (+)
CI01000027_01153787_01158632 NA coding upstream 302180 1153787 ~ 1159001 (+)
CI01000027_01148208_01150893 NA coding upstream 310264 1148058 ~ 1150917 (+)
CI01000027_01519267_01519711 AFP4, APOA2 coding downstream 56448 1519267 ~ 1519776 (+)
CI01000027_01543335_01543974 NA coding downstream 80516 1543335 ~ 1544229 (+)
CI01000027_01546280_01571152 NTRK1 coding downstream 82924 1545743 ~ 1571220 (+)
CI01000027_01572250_01574108 NA coding downstream 109074 1571893 ~ 1574410 (+)
CI01000027_01767031_01767683 NA coding downstream 303788 1766607 ~ 1767863 (+)
G138455 NA non-coding upstream 725 1460240 ~ 1460456 (+)
G138454 NA non-coding upstream 1197 1459767 ~ 1459984 (+)
G138453 NA non-coding upstream 1611 1459295 ~ 1459570 (+)
G138415 NA non-coding upstream 82327 1378106 ~ 1378854 (+)
G138407 NA non-coding upstream 108273 1352704 ~ 1352908 (+)
G138474 NA non-coding downstream 66902 1529721 ~ 1529926 (+)
G138475 NA non-coding downstream 70151 1532970 ~ 1533422 (+)
G138491 NA non-coding downstream 119214 1582033 ~ 1582333 (+)
G138494 NA non-coding downstream 130456 1593275 ~ 1596468 (+)
G138508 NA non-coding downstream 170005 1632824 ~ 1647449 (+)
G138290 NA other upstream 462000 995970 ~ 999181 (+)
G138247 NA other upstream 591606 855388 ~ 893121 (+)
G138238 NA other upstream 629498 829774 ~ 831683 (+)
CI01000027_00391159_00499309 CSMD3 other upstream 1032505 390683 ~ 499760 (+)
G138057 NA other upstream 1364454 93559 ~ 96727 (+)
G138436 NA other downstream 44142 1506961 ~ 1507816 (+)
G138515 NA other downstream 201589 1664408 ~ 1676860 (+)
G138915 NA other downstream 2021568 3484387 ~ 3486647 (+)
G138953 NA other downstream 2039253 3502072 ~ 3520065 (+)
G140436 NA other downstream 3274579 4737398 ~ 4774262 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_011027 NA non-coding NC_007127.7 CM002900.2 45982473 ~ 45994189 (-)
mexican tetra (Astyanax mexicanus) G340697 NA non-coding NW_019172945.1 APWO02000037.1 731229 ~ 733148 (+)