XLOC_008569 (si:dkey-118k5.3)


Basic Information

Item Value
gene id XLOC_008569
gene name si:dkey-118k5.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 28355023 ~ 28365389 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017109
CTTGTATTTTGTTATTGCTCAATAAATCAGGTGACTTGCGGGGGAAAATGACAGAGCATGTCAATCATATGGACGCCTATAATGTTGCCGTTATATACTATAGCGATTCATTTATAAACTGTAATACGGTAGTAGCTTTCGTGTTAAGTAATCGATAGATATCTCCTATTTGTTTTACATCATGTGAATATTTTGAATACGGCTATTATCAAAGGAAAGTTTCACTTTCAAAATGAATGAGATTCTACGGAAGTGAGGGAAGCGTGTGATACTGTTTATTGGCGTATTTAGCCATTCctttgttttggtttaggagCTCTTATTATACCTGTTTGGATGTACACCGGTTATACAGTAAGCCAGATTTAATTCAGAGGTATTTAAAGGAATGTGTTGGGTTACTTTCTGGGCGTCAAGCTATTCGTTTGATTTCCCTGTCAGAGTTTGTTCAGTAATGTTAAGTACCGTTTAAATAATACATTGTGTTTTATTGATATGACAGTGAACATATTTGGACAAACACCTTCTGAGTTAAGAAACAATGACACAACATTCATTACTTTTTTGTCGATTTACCACACGATACCGACATAAATGAGACACGTTGTGTTGTCGTGCTGTTTTGGTTAAACTCTGACAAACACTTGTTTAACAGACATGTATCGTTGTTGAAATGTTATTTGAATACGCGGCTGGAATAAcattaattgtacaaaaaaaactaattttaacataaaattaattaattattctttttaaataactTCAAATTAGAATTGAAATCATTTTCAGGGGGTTCAGGCCATAATAAGGGGGCCCCAAATTCCCCCAGAGCCggtaatattttaaagtgatgGCTGTTAGAGTCTGTTGCACTGAGATTCAACTGCGTCGCGTGGAGCTGGTGGAGAACTACAGTATACACTTGACACGCCTTCTGGACGTGTTGTTTAATGTGGGGGCATTGACCGAAGAGGACCTCAGTCTCATAAGGGGCTCGTCTGTTAGAGGCGAGCGGGACTGTATGAGATTTCTGCTGGATGTGCTGAATGGTAGAGGAGAAGAATCATGCAGGGCGTTTTTCTATATACTACCAAGTATCCAAGATGGGACCTTACAAATAGGGCAGATCGGCAGACAAGAGCATCTCAAAAAACACAAGGAAATCTTATCAAGGGAGCACAGCCTGGTGGACTATCTCAGCATCAGGAGACACACTTCAGGGCAGGATGAGACCAGACAGTTGACTGATATCACCTTCTCAAGACAGGCTGGTTATGCATCATCTTCTCAATGCCGACATGAATCAACTGGAGTTGGAGATGCATTCAGAACATGTGCAGATGATATCTGCGTTTTCAGCGATGTTTACGGCAGTCTGCTGTCCAGTCAATCGAGTGGTGTGAACATGTTGTCAGGAGTTGCTGGAAGTGGAAAAACCACAGTTGTAAGACGCTTGGTGCGAGAGTGGGCTGCAGAAACCACTTCACACAAAATTGTCTTACCCTTGTCCTTTCGTGAGTTAAACCTCATAACTCAAGAGCAGAGCTTGCAAGACCTGCTCTCAGATCACTACATTCACCTCAAACCTTTCCTGCATGACTTACTCAAGTCAAAACCAACCCAGTTTTTACTCATCCTAGATGGTCTGGATGAGTTCTGCTACCCTCTTAATTTCGAGCACACTCCCAAATGCTCAGATCCCGAGAGGGTGCTGCCTATACAATCCATTGTGGTCAATTtaatcaagggaaatctgcttccagGCATGTCCGTTTTTCTCACCTCAAGGCCTCATGCGGTCTCCAAAGTTCCTCCGGTGCTGGTCAGCCAGTATTACAGCCTGTTGGGTTTCTCTGTAGATCAGCAGAAGCAGTACTTTGAGAAGAACTGCAGATCTCCTGAGGCTGCTGCTGCAGTTTGGGCCTCAGTGTCGTCCCATAAACCCCTTCTCCTCATGTGCCACATTCCCGCATTCTGTTGGATTGTGTCCACTGCCTTGCATGACGGTGGCTCCTGCCTTTATCCTGATCCTGTAAATGCCAAGTCAGGAGAGCAAGAAGGCCTCGATAAAGATGACCTACAGATACCTTCTGAGATGAGCTCCAAACCTGTGACGATCACCGAGATTTACTGCTGTTTCGTTAAATCCATCGTGCTGTTCCATGCCCAAGGGCGAAGCGAGGGCTCCCATCACACCAGGCTTCAGCATGCTCCTCATGTCCTGGCTGAAATGCAGCCAGTACTCAAAAGTCTCGGGGCGATGGCCTTCAAAGGCCTCCTGGAGAGACGATTCATCTTTGAAAGCTCCGATATAAACTCTTTTAATCTGGATAGCACCAAACTCTCACAGGTGTTCCTCTTCGAGATCCTTAAAGAGGATCGAGCGTCCCTCACCTTAGAAAAGGGCTTTCATTTCCTCCACACCAGCGTGCAGGAGTTTCTGGCCGCCTTGTACTATGTTCTACAGTCACTCTCAGGATCAGATGCGTTTTCAGGCCTCAAACCAAGAACAGGCCGATATCTTCAGTCTGCGCTTAAACAAATGGGATCAGCTGTCAACAAACTCAGCAGGCCGCGGCGTCTTTTCTGCAGACGTATTAAGAAGGCACTTCGCTGTGGGGAACAACATCAGTCTGGACACATGGATCTTTTCTGCAGATTTGTTTGTGGCCTGCTGGTTCCCAGGACACGTCTGATCCTAAATGGATTTTTTCCTGATGGGCCCAAAATGCATCTGCTCCGTTGCGAGCTCTCTCCAGACTTGACTCCTCCTTTCCTGCTCCATCTGTTACATTCTCAGCTCCAGAGCTCCACCCTGGGCCCGGAGAGGCAGGTCAATGTTTGTCACTGTCTGTACGAGGCCCAGGACCCAGGTCTGTCACAGCGCCTACAGGGTTGGATGAAAGTTCTTTCACAGCAGGCCTCAGATCAGTCTGGTTCGGTAAACAGGGACTGGAGTGAACTGGCTTTCCTCTTACAGCTCAGCCCAGACCTGCAGGTTTTACATTTGGACGCTCAAGGACTTGATGCTGATGGATTAAGCAGACTCCTACCAGTCCTTCCTCTTTTTTCAACACTGAGTCTCGGTCAGAATCCTCTTGGTTCAGAGGGAGCTGCTGTGTTGTCCCTTGTTCTGAGAAGCCCAGACTGTTGTATTGAGAGGCTATGGGTGGTTGCGACAGGGCTTGGATGCGAAGGCCTGAGGATCCTTGCAGAAGCTCTGAAGGAAAATCGTACCGTGACTGACCTCAGAATGGCCATCAATAAAATTGGAGATGCTGGAGCTGGTTATCTTGCAGACCTACTGAGGACAAACCGCACGCTGACAGATATCAGACTTCGTGACAATCTAGTAACAGATAAAGGAGCCGAAATCCTCATGTCTGCACTCAAAGAGAACACTACCTTAAAGTATCTGTGGCTCTTTGACAACAAGTTTACCAAAGATGGCGTCAGAAAACTGAAAGAATTTGCAAAGACCAGACCCAACCTGGACATTAAAGTGTGCATCTGACACTCAAACTGAAAACATCTCTCTAAAAGGAACGTTCGTTTCTGAAATGGTTAAGCAAAATTTCATTCAGAAATACTATGTTGCTCTGatatgttatttttaacacaCTGTTTCTTCCTTGTTTATGTTCATATGCCTTTTCTGTGACAACTTCTGAATTTCATTGAGATTTTCAAACCCTCTCATCTTATTTAATCAAGATCTCTACATCACTATTAGTAATACAGTGAAGTATGAATACCTGGTTTTACTGCACTTTCTCACAACATGTCCCATATATGTCCCATAACTGTAATGTCAACCACTAGTGCTTACACTACGAAAGCAGTCCAGGCACATGGGTTTTAGGTCAACAGTGGAGCTCAAAATATTTAGGCTCCATTTAATTCTTTCAGCTTGCACAGTAAACagtgcagggtttcacacaattctccatgttgtcccaacacaaatcgattaagttagcttaattgtccttacaaatttaagttgattgaacataaaacaattaggttatccCAAAAAGCTCAGCAATATTGTGTTGATTGGAAACAATTGTGTTGATTGAATTAACAATAACACatcttgaagggatagttcactcaaaaatgtacatttactcaccctcaagtggttccaaaccttt

Function

symbol description
si:dkey-118k5.3 Predicted to be involved in intracellular signal transduction. Predicted to act upstream of or within regulation of apoptotic process. Predicted to be located in cytoplasm.

GO:

id name namespace
GO:0042981 regulation of apoptotic process biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-121214-294 Predicted to be involved in intracellular signal transduction. Predicted to act upstream of or within regulation of apoptotic process. Predicted to be located in cytoplasm.

Ensembl:

ensembl_id ENSDARG00000087736

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017109 True 4163 mRNA 0.44 7 28355023 28365389

Neighbor

gene id symbol gene type direction distance location
XLOC_008568 myo1cb coding upstream 2126 28268135 ~ 28352897 (+)
XLOC_008567 NA coding upstream 126589 28222431 ~ 28228434 (+)
XLOC_008566 vtna coding upstream 146097 28202170 ~ 28208926 (+)
XLOC_008565 slc46a1 coding upstream 168494 28175638 ~ 28186529 (+)
XLOC_008564 NA coding upstream 191056 28160893 ~ 28163967 (+)
XLOC_008570 slc43a2a coding downstream 3255 28368644 ~ 28405742 (+)
XLOC_008571 pitpnaa coding downstream 45275 28410664 ~ 28425011 (+)
XLOC_008572 ankrd13b coding downstream 117473 28482862 ~ 28539650 (+)
XLOC_008573 NA coding downstream 183237 28548626 ~ 28551677 (+)
XLOC_008574 BX088540.1 coding downstream 233258 28598647 ~ 28627902 (+)
XLOC_008463 BX663520.1 misc upstream 7102741 21252191 ~ 21252282 (+)
XLOC_008561 NA non-coding upstream 495004 27857395 ~ 27860019 (+)
XLOC_008560 NA non-coding upstream 548654 27803733 ~ 27806369 (+)
XLOC_008559 AL935164.1 non-coding upstream 560210 27794699 ~ 27794813 (+)
XLOC_008583 BX537104.1 non-coding downstream 796267 29161656 ~ 29271467 (+)
XLOC_008587 NA non-coding downstream 1187654 29553043 ~ 29643810 (+)
XLOC_008588 NA non-coding downstream 1230195 29595584 ~ 29597117 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000072_04883669_04888061 NA coding CI01000072 null 4883669 ~ 4889286 (+)