G138515


Basic Information

Item Value
gene id G138515
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 1664408 ~ 1676860 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU157376
CAGCGCTCGGATAAAATCACCTAAAACGTCTTTGAGGTACTTATGTCCAATGAGTTTGAGGTACTCTTCTATGGCTTTGGTGGCCAGGGTGTTCTCTCTGAAGATAAGGTGCTCTCGGTCAATAAATCGGTCCACCTCGCACATTGCCATGTCTGAAAGGAAATCCTTTGCCTTCCCTGTGCTCTGCAGGATGTGCACCAGAGCACAGGCCACTTCCTCTTTGCTCTTGACACTCAGCAGTGGCTCCAGAACCGCGCACAGAGTTCGGTAGTTGTTGGTGACATACTCGGCAAACTCTTTATACAGCTCCATTGGCAGGATGCTCATGGTCTGAAAGCGCGACTTGAGCCGCAGGGAAGCGTTGATGATTTTGCCCCCTCCCACACCGCCACCCTTGGCCAGGACGCTGGGCTGAATGACGGGGTACCATTGCTCCACAAACTGACGACCAGTGATGCTGGAAATGGGGATGCTGACCAAGCCCAGGTATGTGATCTTTTACCTTGCGTCTTTTTTTGTCCGTCTCTTTGTAAAGATGAAGGCGGAGGTTGCGGACAGCTGGCAGGTTGTTGAACTCAAAGTGCTCACCCCAGAACACAGTATCGGTTCGGGGTTTGCTGGTGGTGCGGGCATAAAGCATGTCATCCAAACACAGTTCACAATAATATCGCTTTTTGGGTGGGAGTTCACGGGCCTCGATGATCCACAGCTTCAGAACATTGTCGACACGTCGACTGTTGTCTTTGTTTGGTTTGACAGCTCTCTGTAGATTCTCTATCCATTTGTCTCGCTCCGCAGCTGACCGACAGGCAAAACACTTTGTTCCTGAAGCAGTTGTCACTCAAAACAGTACTCCTGTCCCAGTATACTGGAGTGAACTGGCTTGATGATCGCATCTTCATCAAGTGTCAAATCCAAGGCCTCGGCTGCGCTGCTGGGAGACAGCAAAGACTCATGGGAGTGCGATTCTTTGAAGCTCTGCATCAGACGAGTCCTGGTCAGCGCTGCGGAAACGAGGGAGGATCATGTGGCGGAAGCTGCTGGTTCGGTCCAGTTTGGGCTGACTCTTGGCCCGTTTGATGGACCCCTTTAGTCTTCTACTGAGGAAACTCTAAGAAAAAGAAACAGACTCAGAATTAATATGCATGACCACGGACAACAAACCTAAGGAATGGATCATTTAGACTGCATAGTCTGACGCTTAAAACATTAATCATAGGCAATGTTTGCTTGCATCAAGTGATTTGTAAGGGCATTTTTCTTTTTTTCTTTTTTTTTTACCTTTATGAGGGATACAGAAAAAAACATCTATCCATATAAATAACACACAGTATGCAGCCATTTATACTTTACACGCAAAGAATTTTTAACATTGAAAAAATAAGTTTCATC
>TU157374
GGTAACTTAAAATATTGCCAAAATCTTACCTAGACAAGCTTTTGCGTTAGGAGTTTGCATACAATGTCTTAAAATTCTGTCTAGGTAGGTTTTTGAGCATACTTACAAACATACATTATTCAAATAAAGTGCTACCTTTGCCTTCCCTGTGCTCTGCAGGATGTGCACCAGAGCACAGGCCACTTCCTCTTTGCTCTTGACACTCAGCAGTGGCTCCAGAACCGCGCACAGAGTTCGGTAGTTGTTGGTGACATACTCGGCAAACTCTTTATACAGCTCCATTGGCAGGATGCTCATGGTCTGAAAGCGCGACTTGAGCCGCAGGGAAGCGTTGATGATTTTGCCCCCTCCCACACCGCCACCCTTGGCCAGGACGCTGGGCTGAATGACGGGGTACCATTGCTCCACAAACTGACGACCAGTGATGCTGGAAATGGGGATGCTGACCAAGCCCAGGTATGTGCTCTTCTCCTTGCGTCTTTTTTTGTCCGTCTCTTTGTAAAGATGAAGGCGGAGGTTGCGGACAGCTGGCAGGTTGTTGAACTCAAAGTGCTCACCCCAGAACACAGTATCGGTTCGGGGTTTGCTGGTGGTGCGGGCATAAAGCATGTCATCCAAACACAGTTCACAATAATATCGCTTTTTGGGTGGGAGTTCACGGGCCTCGATGATCCACAGCTTCAGAACATTGTCGACACGTCGACTGTTGTCCTGAGTGTGGGAAACACATAATCAGATTTGCATCATACATAAAC

Function

NR:

description
PREDICTED: thioredoxin domain-containing protein 12

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU157376 False 1392 TUCP 0.47 7 1664408 1676860
TU157374 True 755 lncRNA 0.49 2 1665291 1666433

Neighbor

gene id symbol gene type direction distance location
CI01000027_01572250_01574108 NA coding upstream 90881 1571893 ~ 1574410 (+)
CI01000027_01546280_01571152 NTRK1 coding upstream 94071 1545743 ~ 1571220 (+)
CI01000027_01543335_01543974 NA coding upstream 121062 1543335 ~ 1544229 (+)
CI01000027_01519267_01519711 AFP4, APOA2 coding upstream 145515 1519267 ~ 1519776 (+)
CI01000027_01413155_01416305 NA coding upstream 247633 1413101 ~ 1417658 (+)
CI01000027_01767031_01767683 NA coding downstream 100174 1766607 ~ 1767863 (+)
CI01000027_01811625_01827803 RGL2 coding downstream 143324 1804199 ~ 1828182 (+)
CI01000027_01843365_01850501 FCGR2A coding downstream 176932 1843365 ~ 1850501 (+)
CI01000027_01850735_01853042 NA coding downstream 184302 1850735 ~ 1853513 (+)
CI01000027_01865502_01875022 HPN coding downstream 199069 1865502 ~ 1877374 (+)
G138514 NA non-coding upstream 1442 1661885 ~ 1663849 (+)
G138508 NA non-coding upstream 17842 1632824 ~ 1647449 (+)
G138494 NA non-coding upstream 68823 1593275 ~ 1596468 (+)
G138491 NA non-coding upstream 82958 1582033 ~ 1582333 (+)
G138475 NA non-coding upstream 131869 1532970 ~ 1533422 (+)
G138519 NA non-coding downstream 7203 1673636 ~ 1704490 (+)
G138541 NA non-coding downstream 73722 1740155 ~ 1749656 (+)
G138545 NA non-coding downstream 76623 1743056 ~ 1743838 (+)
G138573 NA non-coding downstream 86773 1753206 ~ 1756788 (+)
G138436 NA other upstream 157475 1506961 ~ 1507816 (+)
G138290 NA other upstream 666110 995970 ~ 999181 (+)
G138247 NA other upstream 795716 855388 ~ 893121 (+)
G138238 NA other upstream 833608 829774 ~ 831683 (+)
CI01000027_00391159_00499309 CSMD3 other upstream 1236615 390683 ~ 499760 (+)
G138915 NA other downstream 1817954 3484387 ~ 3486647 (+)
G138953 NA other downstream 1835639 3502072 ~ 3520065 (+)
G140436 NA other downstream 3070965 4737398 ~ 4774262 (+)
G140440 NA other downstream 3113984 4780417 ~ 4785660 (+)
CI01000027_05050310_05055447 NA other downstream 3382490 5050310 ~ 5055755 (+)
G138594 NA non-coding downstream 112896 1789756 ~ 1793380 (+)

Expression


Co-expression Network