G138541


Basic Information

Item Value
gene id G138541
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 1740155 ~ 1749656 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU157408
CGCTCACTACTGCGCGCTGGGCTCTCCACTTGACAGTAAGCCAGCAGAAATCTTTTCTGCCATGGAAATAGCCTGTCACATCCAGCTCCGTCCTGACAAGAAGTCCTGGTGAGCTGGAAGAGCTGCCCAGCGCTGCTCTGTTCAACAGCACTCTCCGCCATGAAAGAAACTGCTTATTACAATAACTAAGACTTCATAGGGAAAGAATATGAAATGATTTAGGTGCAAGAAATATATGAAGTGACTTTATGCCAGCATAAAACAAGGTACTATGTTAGTGTTTATCCAAGGCAATAAAGCTAAAGGAACATACGCTACAGCTCAAAAGAATAAGAATACTTAATACTTTTATTCAGCATAAAAAAGACTGTTGGAAGGTAGTGTAAGTAACACTAACTTTTCTGAAAATTGCTCCAAAGATAAATTCTTTTCTCAAACAGTTTCAGCAAACTGTAACAACTCAAATCCATCTTACTCTTCAACTCCTCTCCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU157408 True 493 lncRNA 0.40 2 1740155 1749656

Neighbor

gene id symbol gene type direction distance location
CI01000027_01572250_01574108 NA coding upstream 165745 1571893 ~ 1574410 (+)
CI01000027_01546280_01571152 NTRK1 coding upstream 168935 1545743 ~ 1571220 (+)
CI01000027_01543335_01543974 NA coding upstream 195926 1543335 ~ 1544229 (+)
CI01000027_01519267_01519711 AFP4, APOA2 coding upstream 220379 1519267 ~ 1519776 (+)
CI01000027_01413155_01416305 NA coding upstream 322497 1413101 ~ 1417658 (+)
CI01000027_01767031_01767683 NA coding downstream 16951 1766607 ~ 1767863 (+)
CI01000027_01811625_01827803 RGL2 coding downstream 60101 1804199 ~ 1828182 (+)
CI01000027_01843365_01850501 FCGR2A coding downstream 93709 1843365 ~ 1850501 (+)
CI01000027_01850735_01853042 NA coding downstream 101079 1850735 ~ 1853513 (+)
CI01000027_01865502_01875022 HPN coding downstream 115846 1865502 ~ 1877374 (+)
G138519 NA non-coding upstream 35665 1673636 ~ 1704490 (+)
G138515 NA non-coding upstream 73722 1664408 ~ 1676860 (+)
G138514 NA non-coding upstream 76306 1661885 ~ 1663849 (+)
G138508 NA non-coding upstream 92706 1632824 ~ 1647449 (+)
G138494 NA non-coding upstream 143687 1593275 ~ 1596468 (+)
G138573 NA non-coding downstream 3550 1753206 ~ 1756788 (+)
G138594 NA non-coding downstream 40100 1789756 ~ 1793380 (+)
G138558 NA non-coding downstream 84359 1834015 ~ 1840148 (+)
G138436 NA other upstream 232339 1506961 ~ 1507816 (+)
G138290 NA other upstream 740974 995970 ~ 999181 (+)
G138247 NA other upstream 870580 855388 ~ 893121 (+)
G138238 NA other upstream 908472 829774 ~ 831683 (+)
G138915 NA other downstream 1734731 3484387 ~ 3486647 (+)
G138953 NA other downstream 1752416 3502072 ~ 3520065 (+)
G140436 NA other downstream 2987742 4737398 ~ 4774262 (+)
G140440 NA other downstream 3030761 4780417 ~ 4785660 (+)
CI01000027_05050310_05055447 NA other downstream 3299267 5050310 ~ 5055755 (+)

Expression


Co-expression Network