G138558


Basic Information

Item Value
gene id G138558
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 1834015 ~ 1840148 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU157426
CGGAAACTGAGGGTAACACGGGTATGATGTCATTGATAGGCGACGTACGGACACGGTCCGTGTCCTGGGTAAAATTGCTTATTTTTCTGGATTTGAACATTCTTGGAAACGTTTGGGATAATGTAAGTACACAAGTCAACAAAATATATAACATTGTTCTAGTGGTTTTTGGATATTTGAATCCAAAAATCTTACATATTGTGCCTTTAATTTACGAGTGATAACTTTTAAGTAAGTCCTACACTGCCACCTTTTATCAGTGCGATTTACTCAAAGCAATGTGTATAAGTTGAACTTCTTTTTAACTTGGCACGTGTTTTATGGAACAAAATTCTGTAAAACAGCAATTTGCATCACAACAGTCAAGGATGTCAATCTAGTACATATTTGCATAGAATAGCTATTTTTAAAAAATAAAAACTCCAAACCGATGCAAGAACATCCTCAACATGACCAGAACAAATTTGTTTAACAAACAGAGCTAAATGTTGAACTCGTGATCAACACACATTTGACTGGCTGGCATTAAATTGTCACTTACACCATTACATCAGTATTAAAAATGAGTCTTACCATTGGCAAATGATGCACCTTTTGCGAAGCTAATGAACTCCGTTCCAGCCAATGAGAGGAGTGATATACTGCGATTGGATGGGGAGGAGGAAGTGTTGTCCCATCTGCCCAGTGTGCGTTTACAGAGCTGAGCCATAGCAGGAACAGCAGCGGCCAGAGAACCAGGGATGCTGCAGTCATATATGTGAGGCTGATTGATTTTTAACTGCTCACCTATGGTCTGAAAGCGCTCAAAAGGATATGTGACACAGATGAAGTTCTGTCCATTATTTATGCCAGAACTGGGATATGAAAACGTGCCCGCTGATTTAGGAGGGGGGAAATGAGGTGTGCTGTGGACCAACCAGAAGCCCTGCTGCTTATCAAAGACAACAACTCCTTTGGTATGGCCACAAGTCCTGCTTGCACCTTCAAAATGTTTCTGTTGTGGTGGCTGGTCATTATACAAGATGTATCCAACATCACCACCCTCATATAAAGGCCCTACTGTTTGACCAACAGCACTTTGACTGTCATTAACTAAAGTCTTCCCATCTATCCATCCCTCACTCTCTCCATCCATGAAAAGGTACTTCAGCCCCTCCTCCACAGGATCATGATGCAGGTGTGGGAGTTTGTACAAGTAAAACCAGTCAACAGGTTTCCCCTGATCATCATAACATGAGATGGAGGAAGAAGCTCCTCCTGATGCGTGAAGGAGGAGCAGAACATGAAGCAACATGATGCAAATGAAAAACCTTAACGAAGGCAGACGTTCTGCTGAGACAGAAATGTAAGTGGATCACATCAGTCCATCCGACAGCGAAACTTTCAAATCCTCATGTTGTCACATGTAGCAGGTTCATCAGTTTTGTAGACGTAGAATTTTAAAAGGGTAGAATCGCATTTAGCGTGACCCAAATGGGCGGAGATTGGTGGCCATTATGTTTTCTTTATTGTTCGGATAATTATTTTCTTATTTGAACCACTGTATATTTTCAATTCAGTGTCTATTA

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU157426 True 1568 lncRNA 0.41 6 1834015 1840148

Neighbor

gene id symbol gene type direction distance location
CI01000027_01811625_01827803 RGL2 coding upstream 5833 1804199 ~ 1828182 (+)
CI01000027_01767031_01767683 NA coding upstream 66152 1766607 ~ 1767863 (+)
CI01000027_01572250_01574108 NA coding upstream 259605 1571893 ~ 1574410 (+)
CI01000027_01546280_01571152 NTRK1 coding upstream 262795 1545743 ~ 1571220 (+)
CI01000027_01543335_01543974 NA coding upstream 289786 1543335 ~ 1544229 (+)
CI01000027_01843365_01850501 FCGR2A coding downstream 3217 1843365 ~ 1850501 (+)
CI01000027_01850735_01853042 NA coding downstream 10587 1850735 ~ 1853513 (+)
CI01000027_01865502_01875022 HPN coding downstream 25354 1865502 ~ 1877374 (+)
CI01000027_01878501_01881301 NA coding downstream 38353 1878501 ~ 1882247 (+)
CI01000027_01926296_01931553 NA coding downstream 85810 1925958 ~ 1931686 (+)
G138594 NA non-coding upstream 40635 1789756 ~ 1793380 (+)
G138573 NA non-coding upstream 77227 1753206 ~ 1756788 (+)
G138541 NA non-coding upstream 84359 1740155 ~ 1749656 (+)
G138545 NA non-coding upstream 90177 1743056 ~ 1743838 (+)
G138554 NA non-coding downstream 46086 1886234 ~ 1889683 (+)
G138549 NA non-coding downstream 50625 1890773 ~ 1903525 (+)
G138610 NA non-coding downstream 69094 1909242 ~ 1909468 (+)
G138612 NA non-coding downstream 71135 1911283 ~ 1911551 (+)
G138515 NA other upstream 157155 1664408 ~ 1676860 (+)
G138436 NA other upstream 326199 1506961 ~ 1507816 (+)
G138290 NA other upstream 834834 995970 ~ 999181 (+)
G138247 NA other upstream 964440 855388 ~ 893121 (+)
G138238 NA other upstream 1002332 829774 ~ 831683 (+)
G138915 NA other downstream 1644239 3484387 ~ 3486647 (+)
G138953 NA other downstream 1661924 3502072 ~ 3520065 (+)
G140436 NA other downstream 2897250 4737398 ~ 4774262 (+)
G140440 NA other downstream 2940269 4780417 ~ 4785660 (+)
CI01000027_05050310_05055447 NA other downstream 3208775 5050310 ~ 5055755 (+)

Expression


Co-expression Network