G139486


Basic Information

Item Value
gene id G139486
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 1865184 ~ 1870870 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU158519
GACCATCAAAATAAAGTGTTAAAAACTCACCAGTAAACTGCAGAGGTTTTGTCAGTGCCAGGACTGCAATGTCACGACTGTTGTCATCAATGTTGGCGTCGACGAATGGCAGGTAGCTGCTGTGGTAGACAACAGTCTTCACCTCAGCGATCACAACGTTCTTACGGATGGGAGTGTTGTAGATCGATCCCATCAGAACCCGCCAGCGTGACACATGACGATACCTCCTGAGGATACAAGCCTGAGAGAAAGCAGTGTGCAGCACTGACAATCCAGCGATCGGAAATGATGGATCCACCGCACTGGTGAACTCCATCATACTGTAAGCTGACCTGCCACGGCCACGAACCCTGGCGAGCGTCGACTCCCCCCACGATCCGCTCTTCAGGCAGCATACGACGACCACAGTCTACAGCGACAGAGAGTCAACAAATCATGTATTTGCAGTGTAGAAATATTCAAAATGCTACAAATTGAGTTGTAGCACTTACCCTGACAAATCACCTCTAGTATCTGACCTTTGTCACATTTACTGAAACAGAAATGAAACATCAGAATGTTTTAGAGAGATTAACACTATTGCAATCGGTTCTTAGATTTTAGTTTGCCTAATTAAAATGCGATCTGAATCACTGTTAAAGGTGAATTGTGTGAAACTGCAAAATGTTGACTGGGCCGGTCATAGCAACATTGGCTTAACCAATTAAATGAGTTTGAGGCAGGATTATCTGTTTGTCTAACTACACTACTGGTGAAAAGTTTTTATATATATATATATATATATATATATATATTTGGGATAAGTGTTTTATGCTCACCAAGGCTGCATTTATTTGCTCAAAAATACAGTAAAAACTGTTTTGTATTTGAATTTTAAAATGTAATTTATTCCTGTGATCAAAGCTGAATTTTCAGCATCATTACTCCAGTCTTCAGTGTCACATGATCCTTCATAAATCATTCTAATATGATGATTTGCTGCTCAAGAAACAGTTCATATTATTATCAATGCTGAATATAGTTTTTGCTGCTTAATATTTTTGTGAATCCATGATACTCTATGACATTCAAAATTTGGGGTAAGTAATTAAGTAATATTACAAAAGATTTCTATTTCAAATAAATCCTGTTTAATTAAAGATTCCTGAAAAAAATGTCATGGTTTCCACAAAAGTATTAAGCATATTTATTAAATGTTTTCAAAATGGATAATGGTAAGAATCATTATTAATAACTGAGCAGAAAATCATCATATTAGAATAATGTAACACTGGATCATGTGACACTGAAGACGGGAGTAATGATACTGAAAATTCAGCTTTGCATCACAGAAATAAATTACATTTTAAAATACATTCAAATAGAAAACAGTAATTTTGAATTGTAATAATATTTCTGTTTTACTGTATTTTTGACCAAATAAATGCAGCCTTTCTATTTAAAAACATAAAACATTCGTAATTATTCCAAAATCTTGACCAGTAGTGTAATCAATGACCAAGAGGGCATCCAGAAAGCATCTTTCTTCCTTGATGGCCATTCAAAATTAGCTGTTTATTCTGATGCAATATGTTTTTGCAAGCAACATTTTATATTTCATTATATTATAGAGGATTTTTACCAGTGACTTTTACCGTTTTTTGGTAGACTCTTTAAAATCAAAAATGTATAGCTTGCTAATGGGGATGCTGAGAGCTTTATAGACCTCCTTGTTCAAAACAATGATGAGAGGAACTGTTTATTTTTGCAATTCAATTTGGTGATGCTCATGGTGCATATGTTTATTTTTAATCATATGAAAAGGCAATGTCTTACCAAGGATAGAGGGATGTTTTTATCTTCTTCCCATATGTTAACTCACTATCTTTCACGCAGAAGAAATCTCGGTCACCGCCATTGTCAGGAGCACATGTCACTGAGAAATTTACTGCTCTGAATGGAAGAAAATTGCAAATCAAGACATAACTAAAACAATGATGAATTCCAGAGAAACAGTGAGTCTGGCATGCTTGTTTGTTACCTGATGAAGCCCATCTCCTCACAGCTGATGTTGGCGACGAGCTGGTTGACGCTGGATGAGCAGACGTGTCTCCACCTCCGCTGGGTGGAGTCGAACACTCTCAGCCTCTGGTCAGCTGCACTCACCTGCACTGCAGGACATAATGAAGATAGTGAGCATGTTCATACTATTTTAGATGACATTTTCTATGTTACATGGGAATGTGCAGACCAGAATGCATTGTGTGGAATAGTGCATATGCAATGCGCTCAACTTGACCTTCCATTTCCAATGTGAAGAAAATGTGAAACGCAAAATAATGATTATATTTATGAGATTATAACTGGATGCCACTTTCGGAATTATACATGCAGCATACACAGATGAGCCAAAACATTATGACCACCTGCCTAATATGCTGTTGGTCCTCTGCTTGCTGCCAAAGCAGCACCGACTTGCCGAAGCACGGACTCTACTAGACCCCTGAAGGCATCCTGTAGTATCTGGCACCAAGACTTTAGCAGCAGATCCTTTAAGTCCTGTAGGTTTCGAGGTGGAGCCGCCGTGGATCGAACTTGTTGGTCCAGCACATCCCAAAGATGCTCATTTGGATTGAGATCTGGGGAATTTGGAGGCCAGGGAAACACCTTGATCTATTCATCATGTTCCTCAAACCATTCCTGAACATTCCTGTGTGCAGTGTGGCATATTTTGCTAAAAGAGGCCACTTCCACCAGAGAACACCATTGTCTTGAGGGGGTGTACCTGGTCTGCAACAATGTATAGGCAGGTGGCATGTGTCAAATTTACATCCACATGAATGGCGGGACTCAGGGTTTCCCAACAGAACATTGCTCAAGGCATCACACTCCCTCCACCGGCTTATCGTCAATCCCCACAGTGCATCCTGGTGCATCCTGGTATAATTTTTCAAAATAGTGCAGCAGTTTTAGTTACAATATCCAAGCAGTGCTGTCGGAGTTTAATATTCTCCCGCCATTGTCATTGTAGTAAATCTCACAAACAAAACTTTAAGCCAATGCCACGATCCAACAACGTGTGTTCTGTTTATCTTCTGCATGTGTGCACATCTACACAGACCCATATCTGTCTCAAATCACGACCATTAATGCAGCAAGCCATATTATTTTATAATTGTATAAAATAATCCAGAAATAAAGCACAAATACGGCAGAGATGCCAAATTCAGCGGCTGGAATTAGCTGAGGTGACTTGATGGCTCACAGACAATAGCGCAATTCACCTGTCACTCAAGTGACCACGCCCTTAATTATGCAGAACTTTAAGACTTAATATAACTTAAACGGATGAGTTATAAAAAAATTCACCCCCCTCAGAGTTGTCATGAAGGGCTAAATTAGCAGTATAGACCAAAACCACAATTTGTACCAACTGTAAACATGTATTTTTTCTGCTGTAAAGTTGGTCATTTTAACATGGGGGTCAATGAAATTCTGCTCTCTTTTGGAGCCTGTCCCTAGCGGCCAATCGATGAATTGTATCACTGAGTTTAAGTCACTTCTGTATTGGCTTCATTAGAAACTGAGGGAGGTTGCCGCTTGGTTGTGACACATTCCTGTATCGTTAAAATTTGATGGGACTCGTGCCACAGTAGACCTTCTGTTGGCTTGGACCAGACGGGATAGCCTTCACAGCCCTCGTGCATCGATGAGCCTTGTGCACCCAACACCGTCACCAGTTTGTGGTTTGTCCATCCACAGATCTCTGATGGTAGATTCACCACTGCTGACCGAGACCAACCCACAAGCCTCGCTGTTTCAGAGATATTCTGACCCAGTCGCCTTGCCATAACAATTTGGACCTTGTCAAAGTCACTTGATGAACACGTTGATTACGAGAACTGATTGTTTGCTTACCATCTAATCCACCCAGGTCTTAATATGTAGCCTTGTTAGGAGATGATCAACAATATTCGCTTTACCTGTGACTGGTCAGAATGTTAATATATAGGCTACACATGACCATTTAAAGAATTTGGGGTCAGTAAGTTTTTTTGTTTTTTGTTTTTTTTTTAAGAAATTAATACTTTTATTCATTAAGGAGGCATTAAAAAGATAAAAAGTGACAACTTTTTTAATAAGTAAGCACCAAATTAAAATAATTCACTGAAAAACTGAATAATGGCTGCTGAAAAATTTGCCAACTCAGCAATGAATTACATTTTAAAATATATTAAAACAATTTCAAATATATTTATCAAAATAAATAGAGACTTGGTGAGCATAAGAGACTTCTTTCAAAAACACAAAAACCTATATATAAAATAATAATATATAATATGATTATATTTAAATGTAATTAAAAATGAACAATGCTTACCATCAAATAATCCAGTATCTTCTGTTGTTCTAAGATACGTGACTGAAAATACAAAAAAAAACAAGTGTAGTAAGTCTCTGGAGTGACTTCAGTATTCTGTTGAATCAGCAGTTGCTATAGGCAAACCGGATTTCCCAGAAAGCCGAGCCGAAAGTCTTACCAAGGGCCCAGATGGCGGCTCCCAGACCCCCCAGTATGATCAAGATCACGGCTACTGCAGCGACCACCCGATACGGACTGAAGATGGTCATCCCTGGACTTCCTGAAGGATAGAAACCAACGACGCTTTCAGTACAGGACACAGTATTTATTTAATGCAGTAATGTGGGCTTTTGTAAAAATACATGCCTGTGAGCAAACACATAAACCATGACAGAGCTGATGAAAAGAACAGAACCATGAACAAAATCAATAGTCCAAAGTCATCAATTCCTCTCTGCTAAAGTAAACGTGGGACTGAATCTCAGTGTCATGTTCAGCTCTCTCTCTCTCTCCACACACACACACAGAACAGTGTCAGCATGTTCCTAGACAAAATCATACAGATGTAACCATGTCAGTGACCAATGCCAAAAAAACA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU158519 True 4940 lncRNA 0.39 2 1865184 1870870

Neighbor

gene id symbol gene type direction distance location
CI01000027_01855521_01856799 NA coding downstream 8328 1855352 ~ 1856856 (-)
CI01000027_01832797_01839912 DNASE2 coding downstream 25272 1832496 ~ 1839912 (-)
CI01000027_01799404_01801967 NA coding downstream 63093 1799058 ~ 1802091 (-)
CI01000027_01775507_01793407 PHF1 coding downstream 71777 1775495 ~ 1793407 (-)
CI01000027_01651455_01676579 SYNGAP1B coding downstream 188605 1650811 ~ 1676579 (-)
CI01000027_01966516_01972432 NA coding upstream 95374 1966244 ~ 1973211 (-)
CI01000027_02119227_02124423 NA coding upstream 248261 2119131 ~ 2125142 (-)
CI01000027_02147653_02152768 NA coding upstream 276687 2147557 ~ 2153486 (-)
CI01000027_02226447_02227499 NA coding upstream 354911 2225781 ~ 2227499 (-)
CI01000027_02240021_02241453 NA coding upstream 369126 2239996 ~ 2241453 (-)
G139569 NA non-coding downstream 19690 1845237 ~ 1845494 (-)
G139568 NA non-coding downstream 20842 1844004 ~ 1844342 (-)
G139567 NA non-coding downstream 21586 1843376 ~ 1843598 (-)
G139553 NA non-coding downstream 256116 1608378 ~ 1609068 (-)
G139487 NA non-coding downstream 308014 1551085 ~ 1557170 (-)
G139461 NA non-coding upstream 5836 1876706 ~ 1877374 (-)
G139583 NA non-coding upstream 66227 1937097 ~ 1937329 (-)
G139460 NA non-coding upstream 66927 1937797 ~ 1944036 (-)
G139493 NA non-coding upstream 102987 1973857 ~ 1976949 (-)
CI01000027_01303308_01319462 NR2F5, NR2F1, NR2F1.L, NR2F2 other downstream 545023 1302034 ~ 1321178 (-)
CI01000027_01241417_01245177 NA other downstream 618207 1240478 ~ 1246267 (-)
G139117 NA other downstream 1627605 234212 ~ 237579 (-)
CI01000027_00131884_00132650 NA other downstream 1731382 131395 ~ 132650 (-)
CI01000027_00108990_00118237 NA other downstream 1746881 108119 ~ 118408 (-)
G140118 NA other upstream 1630664 3509352 ~ 3584679 (-)
CI01000027_03787377_03788902 NA other upstream 1916508 3787377 ~ 3790279 (-)
CI01000027_03922380_03931033 NA other upstream 2051526 3922242 ~ 3931033 (-)

Expression


Co-expression Network