XLOC_008571 (pitpnaa)


Basic Information

Item Value
gene id XLOC_008571
gene name pitpnaa
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 28410664 ~ 28425011 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017112
ATCTTTCAGGAAATGAATTTAAAGAAATGAGAAATCCAGGAACTTGAGCTGAAACGAGTCACGGCGGGCAGATCTGAAGAGTCGACGAGGAAACTCTCTTAAAGCCAGTTTGAATGTTGGACACGGGGCGGCAAAGGAGATAACATGTTGATAAAGGAGTTtcgAATCGTCTTGCCCGTTTCTGTTGAAGAgTACCAGGTGGGTCAGCTGTACTCTGTAGCAGAAGCAAGTAAGAATGAGACTGGAGGTGGAGATGGAGTGGAAGTCCTAAAAAACGAGCCCTACGAGAAAGAGGATGGAGAAAAAGGACAGTACACGCATAAGATTTACCGCTTGCAAagTAAAGTGCCAAGTTTTGTACGGTTACTGGCCCCTTCATCTGCCCTGATTATTCATGAGAAGGCCTGGAATGCTTATCCTTACTGTCGCACAGTTCTTACGAATGAGTACATGAAGGACAATTTTCTAATCATGATTGAGACGTGGCACAAACCTGACCTTGGTGAACAGGAAAATgttcatAATCTTGACTCTGAACGATGGAAACAGGTTGAGGTGATACATATTGACATTGCTGACAGATCTCAGGTGGACACTAAGgACTATAAACCAGACGAGGATCCAGCCACTTTTAAATCACAGAAGACTGGTAGAGGCCCATTAGGACCTGATTGGAAGAAAGAGCTTCCTCAGAAGAAGGACTGCCCTCATATGTGTGCCTATAAATTAGTCACTGTCAATTTCAAGTGGTTTGGCCTGCAGAAAAAAGTGGAGGGTTTTATCCACAGGCAAGAGAAGCGTCTGTTCACCAGCTTCCACAGGCAGCTCTTCTGCTGGTTAGACCGATGGATCGATTTGACCATGGAGGATATCCGCCGCATGGAGGAGGAGACACAGAAAGAGCTTGATAAGATGCGAGAGAAGGATCCAGTGAAAGGGATGTCTGCCGCAGATGAATGAGGTGCTGCAGTTGGGACTATGTCTGCAGCTGTTTGGCTGTGTCCTAGTATTGGATCGTTTCTCTACAGTATGATTGGCTGTTCTTTGTCTTCATCCTTCACTCCAGTAGTTTCTCTTTATCCACCTCTGTACAAAGAACATCTCATCCTGTGATGTttctgagcattttttttttttttggtctagtCCATTTTCCTCAGATTTCCTCTATTTTGATTTTCAAACTCTGTAATTGCATTTCCATAAATGTTTACCCCCCTTTTTTGTTTAAGTTCAGCAACACCAGCACTCGTGTATTTAAACACCCCGTCACTGCTTGCATCTCTAGCATGTTAACATGCTTCTCAAACAGatgctccacccttaatatatttGCTTGAGGCAGCTTCATcttgcacaaataaaaaaactcaagatGAAGCTGCCTCATGTCAAATGACCATGAGTTGATCGTATTAGAGGGCTGCAGCTGACCCATTGTTACTCATAAGCCACTTTTCTCAGGACTTTTTGTAGATCTTAAAAGACTGAATTTGAATAATGTGGTAATACCAGGTTTACAGTAATGAAGTAATGGTAAGCTTACTTCAGTTCTGCTGGACTTCCAAACAGGGTCTAGAGAAGTAAACATTGTGTTGTGTTGGAGATGTATTAGCACAAGGTTCACTTAAGGATTTATTATGAACTGTATTCAGATGTTTAAGTGTCATTCTGCTGCTCTGTCCTCTCCAAGACTACGTTTACTGGACATGGATACAACTCGTTTCATAATTGTGCCTCGACCCAATAATGATATTAAAAAGAGtttatattattgtt
>TCONS_00017113
AACTTGAGCTGAAACGAGTCACGGCGGGCAGATCTGAAGAGTCGACGAGGAAACTCTCTTAAAGCCAGTTTGAATGTTGGACACGGGGCGGCAAAGGAGATAACATGTTGATAAAGGAGTTtcgAATCGTCTTGCCCGTTTCTGTTGAAGAgTACCAGGTGGGTCAGCTGTACTCTGTAGCAGAAGCAAGTAAGAATGAGACTGGAGGTGGAGATGGAGTGGAAGTCCTAAAAAACGAGCCCTACGAGAAAGAGGATGGAGAAAAAGGACAGTACACGCATAAGATTTACCGCTTGCAAagTAAAGTGCCAAGTTTTGTACGGTTACTGGCCCCTTCATCTGCCCTGATTATTCATGAGAAGGCCTGGAATGCTTATCCTTACTGTCGCACAGTTCTTACGAATGAGTACATGAAGGACAATTTTCTAATCATGATTGAGACGTGGCACAAACCTGACCTTGGTGAACAGGAAAATgttcatAATCTTGACTCTGAACGATGGAAACAGGTTGAGGTGATACATATTGACATTGCTGACAGATCTCAGGTGGACACTAAGgACTATAAACCAGACGAGGATCCAGCCACTTTTAAATCACAGAAGACTGGTAGAGGCCCATTAGGACCTGATTGGAAGAAAGAGCTTCCTCAGAAGAAGGACTGCCCTCATATGTGTGCCTATAAATTAGTCACTGTCAATTTCAAGTGGTTTGGCCTGCAGAAAAAAGTGGAGGGTTTTATCCACAGGCAAGAGAAGCGTCTGTTCACCAGCTTCCACAGGCAGCTCTTCTGCTGGTTAGACCGATGGATCGATTTGACCATGGAGGATATCCGCCGCATGGAGGAGGAGACACAGAAAGAGCTTGATAAGATGCGAGAGAAGGATCCAGTGAAAGGGATGTCTGCCGCAGATGAATGAGGTGCTGCAGTTGGGACTGTGAGTGTGATTTAGTTTTGATGTCTGCAGCTGTTTGGCTGTGTCCTAGTATTGGATCGTTTCTCTACAGTATGATTGGCTGTTCTTTGTCTTCATCCTTCACTCCAGTAGTTTCTCTTTATCCACCTCTGTACAAAGAACATCTCATCCTGTGATGTttctgagcattttttttttttttggtctagtCCATTTTCCTCAGATTTCCTCTATTTTGATTTTCAAACTCTGTAATTGCATTTCCATAAATGTTTACCCCCCTTTTTTGTTTAAGTTCAGCAACACCAGCACTCGTGTATTTAAACACCCCGTCACTGCTTGCATCTCTAGCATGTTAACATGCTTCTCAAACAGatgctccacccttaatatatttGCTTGAGGCAGCTTCATcttgcacaaataaaaaaactcaagatGAAGCTGCCTCATGTCAAATGACCATGAGTTGATCGTATTAGAGGGCTGCAGCTGACCCATTGTTACTCATAAGCCACTTTTCTCAGGACTTTTTGTAGATCTTAAAAGACTGAATTTGAATAATGTGGTAATACCAGGTTTACAGTAATGAAGTAATGGTAAGCTTACTTCAGTTCTGCTGGACTTCCAAACAGGGTCTAGAGAAGTAAACATTGTGTTGTGTTGGAGATGTATTAGCACAAGGTTCACTTAAGGATTTATTATGAACTGTATTCAGATGTTTAAGTGTCATTCTGCTGCTCTGTCCTCTCCAAGACTACGTTTACTGGACATGGATACAACTCGTTTCATAATTGTGCCTCGACCCAATAATGATATTAAAAAGAGtttatattatt
>TCONS_00017114
ATGTTGATAAAGGAGTTtcgAATCGTCTTGCCCGTTTCTGTTGAAGAgTACCAGGTGGGTCAGCTGTACTCTGTAGCAGAAGCAAGTAAGAATGAGACTGGAGGTGGAGATGGAGTGGAAGTCCTAAAAAACGAGCCCTACGAGAAAGAGGATGGAGAAAAAGGACAGTACACGCATAAGATTTACCGCTTGCAAagTAAAGTGCCAAGTTTTGTACGGTTACTGGCCCCTTCATCTGCCCTGATTATTCATGAGAAGGCCTGGAATGCTTATCCTTACTGTCGCACAGTTCTTACGAATGAGTACATGAAGGACAATTTTCTAATCATGATTGAGACGTGGCACAAACCTGACCTTGGTGAACAGGAAAATgttcatAATCTTGACTCTGAACGATGGAAACAGGTTGAGGTGATACATATTGACATTGCTGACAGATCTCAGGTGGACACTAAGgACTATAAACCAGACGAGGATCCAGCCACTTTTAAATCACAGAAGACTGGTAGAGGCCCATTAGGACCTGATTGGAAGAAAGAGCTTCCTCAGAAGAAGGACTGCCCTCATATGTGTGCCTATAAATTAGTCACTGTCAATTTCAAGTGGTTTGGCCTGCAGAAAAAAGTGGAGGGTTTTATCCACAGGCAAGAGAAGCGTCTGTTCACCAGCTTCCACAGGCAGCTCTTCTGCTGGTTAGACCGATGGATCGATTTGACCATGGAGGATATCCGCCGCATGGAGGAGGAGACACAGAAAGAGCTTGATAAGATGCGAGAGAAGGATCCAGTGAAAGGGATGTCTGCCGCAGATGAATGA

Function

symbol description
pitpnaa Predicted to enable phospholipid binding activity and phospholipid transporter activity. Acts upstream of or within axonogenesis and chordate embryonic development. Located in cytosol and nucleus. Is expressed in several structures, including blood; digestive system; epidermis; nervous system; and periderm. Orthologous to human PITPNA (phosphatidylinositol transfer protein alpha).

GO:

id name namespace
GO:0043009 chordate embryonic development biological_process
GO:0015914 phospholipid transport biological_process
GO:0007409 axonogenesis biological_process
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005548 phospholipid transporter activity molecular_function
GO:0008525 phosphatidylcholine transporter activity molecular_function
GO:0008526 phosphatidylinositol transfer activity molecular_function
GO:0035091 phosphatidylinositol binding molecular_function
GO:0031210 phosphatidylcholine binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-744 Predicted to enable phospholipid binding activity and phospholipid transporter activity. Acts upstream of or within axonogenesis and chordate embryonic development. Located in cytosol and nucleus. Is expressed in several structures, including blood; digestive system; epidermis; nervous system; and periderm. Orthologous to human PITPNA (phosphatidylinositol transfer protein alpha).

Ensembl:

ensembl_id ENSDARG00000039490

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017112 False 1779 mRNA 0.42 12 28410664 28425011
TCONS_00017113 False 1756 mRNA 0.42 12 28410704 28425008
TCONS_00017114 True 816 mRNA 0.46 11 28410808 28423010

Neighbor

gene id symbol gene type direction distance location
XLOC_008570 slc43a2a coding upstream 4922 28368644 ~ 28405742 (+)
XLOC_008569 si:dkey-118k5.3 coding upstream 45275 28355023 ~ 28365389 (+)
XLOC_008568 myo1cb coding upstream 57767 28268135 ~ 28352897 (+)
XLOC_008567 NA coding upstream 182230 28222431 ~ 28228434 (+)
XLOC_008566 vtna coding upstream 201738 28202170 ~ 28208926 (+)
XLOC_008572 ankrd13b coding downstream 57851 28482862 ~ 28539650 (+)
XLOC_008573 NA coding downstream 123615 28548626 ~ 28551677 (+)
XLOC_008574 BX088540.1 coding downstream 173636 28598647 ~ 28627902 (+)
XLOC_008575 nova2 coding downstream 260614 28685625 ~ 28766824 (+)
XLOC_008576 gipr coding downstream 515341 28940352 ~ 28974120 (+)
XLOC_008463 BX663520.1 misc upstream 7158382 21252191 ~ 21252282 (+)
XLOC_008564 NA non-coding upstream 246697 28160893 ~ 28163967 (+)
XLOC_008561 NA non-coding upstream 550645 27857395 ~ 27860019 (+)
XLOC_008560 NA non-coding upstream 604295 27803733 ~ 27806369 (+)
XLOC_008559 AL935164.1 non-coding upstream 615851 27794699 ~ 27794813 (+)
XLOC_008583 BX537104.1 non-coding downstream 736645 29161656 ~ 29271467 (+)
XLOC_008587 NA non-coding downstream 1128032 29553043 ~ 29643810 (+)
XLOC_008588 NA non-coding downstream 1170573 29595584 ~ 29597117 (+)

Expression


Co-expression Network