XLOC_008572 (ankrd13b)


Basic Information

Item Value
gene id XLOC_008572
gene name ankrd13b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 28482862 ~ 28539650 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017115
CTGAAGTTCAGTGGCTCATCATAGGTGTGAGGAGTCAGGGAGTCTCTTTGGTCTGGGAAACGCGAGCCCTGCCTCAGCCTCCGCGAGCGAGCGTGCGGGCGCGCGCCTTTCAGTGTGTGACAGGGAGAACAGACGAGGAGGAGTGGAGAACAGACCGGAGAGCGTTAGCTTTAAATTACCTTTCAACACAGACGCACTGAATGTCAAGCTACTATGCAAAGAGGGATGCTGTTGAAGAAAAGGGAGAGAAATGCCCTTATCGGTCGTCTCGGCAATAACAATATAGCACGCGCCCTTTACAAAAGTAACTGATATCGCACAAAAGCAGCAGGGGAAACGGAACGGGGAGAAAGCAGCGGCGAACTATGCACTGAGGATGATTTCTGCCAGAAAAACTCCGGAGAAGAGTCGCTACCACCTGCATTATCTGGTGTGGAATAACAAACACCGGCAGCTGGAGAAAGAGCTCTCAGTGCGTGAGCAGGTCGATTTGGAAGTGTTGGACCCACGGGGCCGGACTCCTTTGCACCTTGCAGTGACGCTGGGTCATTTAGAATGTGCCCGTTTGCTAGTTCAGCATGGAGCCGATGTCAGCAAAGAAAACAGAAACGGTTGGACAGTGTTGCAGGAAGCCATCAGCACACGTAACCCAGAGCTGGTACGGCTGGCGCTGCGTTACCGTGACTACCAGCGTACCACTAAACGACTGGCAGGGATCCCGCGTCTGCTGGAGAGACTCCGACAGGCACAGGATTTTTACGTGGAGATGAAATGGGAGTTTACCAGTTGGGTTCCTCTGGTGTCACGCATCTGTCCGAGTGACACATATCGAGTGTGGAAGAGCGGCCAGTGCCTGCGGGTGGACACAACACTCATGGGATTTGAGCAAATGACCTGGCAAAGAGGCAATCGCAGCTTCATATTCAGGGGTCAAGACTCCAATGCCATGGTAATGGAGGTGGATCATGACAGACAGCTGGTGTTTTGCGAGACGCTGCCGTGCATCTCTTCCTCTCCCAGCTCGCCCTCCCCCAAATCCTGCACAACCTCTTTGAACCTTTTAGGGGCGCTGCAGCCTAGCGATGAACAGGTAGCGGCCCGTCTATCTGCACCAGTAGTGGCCACTCAGCTGGACACTAAGAACATCTCCTTTGAGAGGAATAAAACAGGAATTCTTGGCTGGAGGAGTGAGAAAACAGAGGTGGTGAATGGCTATGAATCAAAGGTTTACTGTGCCTCTAATGTTGAACTGATCACACGAACGCGTACCGACCATCTTACAGACCAGCACAAAACAAAACCCAAAGGCGGCAAGACACCTCTGCAATCCTTCCTGGGTATCGCTGAACAGCACATGGGGCCTAACAATGGCcaCACTATGGTGACTCAGATATCATGCCCCACAACGAACCCTCTGGCCGTGACGGCTGACGAGTACTTTAATCCCACCATGAGTCAGAGAGACATCGGCCAGCCCTGTTACCTCACCACCAAAACACAAAGgTTCAAAGCTAAGCTGTGGTTGTGTGAATCGCACCCTCTGTCTCTGGAGGAGCAGGTGGCTCCTATCATTGACCTCATGGCCATCTCCAACACTCTGTTCGCTAAGCTTAGAGACTTTATCACCTTACGCCTGCCTCCGGGCTTCCCTGTCAAGATAGAAATTCCCATCTACCACATCCTGAATGCTCGGATCACCTTCGGGAACCTGAATGGTTGTGAAGAAGGTGGTTTGCCACGAGTGGAGACCGAAGTTGAAGGACAGAAGGAGAGTCCCAGGACAGAGACACCCTCTCCAGGCAGCGACTCTTCCAGTGTGTCGAGCTCCAGCTCCACAAACTCATGCCGTGGAGGAGAGATTCCAGCTTGTGTGTTCGAGGCTCCTCGAGGCTACAGCATTTTAGGAGGAAACCAAAGGGAGAACATTAGAGAGGAGGAGGATGATCTGCTACAGTACGCCATCCAGCAGAGTCTGATAGAGGCCGGATCAGAGTACGACCAGGTGACAATCTGGGAGGCTTTGACCAACAGTAAGCCTGGAACACATCATCTGTCCTGTGACCCCAGTCGGCACGAAAGAACCCCACAGCACAAAGCCAGTCCCGTGGAGAGCCCTCGCAGCACACCTACCAATAAACCACCGTGCAGCTACGACGAGCAGCTCCGTCTTGCCATGGCCCTGTCTGCCCGAGAGCAGGAAGAGGCGGAGCTTCGCCAAAGACGAGAAGAAGAGGAACTGCAGCGTATCATACAGCTGTCACTCATGGAGAAGTGACAGAGCTTTTGGGAACCAAGGGGTGGGAGAGCATGCCTGGGATCTGAAACCAACGTGAACTATGATTGGCCGCTCCCAAAAGCCCCACCCCCCTCTTCTTCCAAAGAACTGCATAAAACGGGCTGCTCTCTGGTCCAACAAGTCTTTCAGAATCACAGAGAAACCTTCACTCTGCAAGTTTACAACACAAACTACTAAACTCATGGCAATCCACGGACTGATCAGTCTCCTACTGTGTGAATGTGCATTTATGACTGAGACGGTCTGCACTGCGTATCTTGGCGTCATTTTTGAAAGTCATCATCCAAGCACTGGCCAGTTCTCAGTGGTGGGTTTGAGTTCTGGGGGATTTGTGTCACttttttaattttgcaatatGGATGTAAAGAACTTTAGTTCTGGTTGttaatacacacaaaaatacactgcACTTGGTTTGTGGAGCTGTAATGTCTCCTAACAGAAGGAGCACATGGGCACATTTCTTGATGGAAATGCTGCATTCATataaaaaatgcagaaaatgaCGGCGTTATACAACCATACGTTGCTTACTaatacttaaaaacaaaaataacatttaaattcaaactaaACATGCACAGAAATATGATCCAAGTTAGTTAGTCGATTGGCAGAAGTAAAACGACAATGCTCTCTCTTATAATAGGAGGTGCTTATGGAAAAGCACAGCACTTTTCCACAAGGTATGGTCTAGCGTCAGAGAAGTTCAGTGGTCTAGTCTTCGGACAAGTAAACCTGTGATGTCAGTAGGCAGAGCTTCCACTACACTAAGTTTTGTTATCGCCACATTATTGATAACGTGATTGGTCTGGCATCCTGAGCCCATCCTGAGCGAATGCCACCTGCAGAATGTTTCATGTTCTGGAGTCAGACTCTGTCTTCAGCCCGTTCTCTATAGCAGAGGTCCCCCAGGTCATGATCTAATAGGCCACAAGAATGTAAAATGACTATATGCAATGacactgtattatttattattatttattatttattcatttccccCTTAAGAGCTCATATCCACATTTATATCAGGCTTGATTCTACATGTTTAAGTtcagcaaaaaacaacaacaacaaaaaagctgcAACATTGAAAGCCAACTTTAGATTGATGATGATTCTTAGTAAAACACAGTTTAGTCTCAGAGACCCAATGAAATCTATGAAAACTAGGAGCCTGGAGTGGAATTGTCAATGGGAATGGAGTACATTTTGTTTTCACTCCCTTGCTGATTCTTTTTGAATTCCACCAAGTAAATAACAGCATCGCATATCTTAAGCCCTGTTTACTCCTGACACTAAGATGCATTTCCAGTGATCCAATCTCAAGTGGTCAGCTGAGACACATTACCATTTACACCTGctcttaaaatgcattttaaatgcgtCTCATGTGACCACATGTATTgattacaattaaataaagcCATTTTCTTGCTTACAAGAGAGAGTGGAACAAACAGATTCAGATTGTAATTTGATTTTGTTTGCAACCCATGGGATTTGGTACAACACTAAAAATGTGTCATTATATGTTTTGATGCACTCTCACGTGCAAAAAGTATGATGGAAAAGAGAAACTAAAGAAACATCGCACTGCCATCttgtaaagcagtgtttctcgaaccacgttcctggaggaccaccagctctgcacattttccatgtc
>TCONS_00017116
AGTGTGTGACAGGGAGAACAGACGAGGAGGAGTGGAGAACAGACCGGAGAGCGTTAGCTTTAAATTACCTTTCAACACAGACGCACTGAATGTCAAGCTACTATGCAAAGAGGGATGCTGTTGAAGAAAAGGGAGAGAAATGCCCTTATCGGTCGTCTCGGCAATAACAATATAGCACGCGCCCTTTACAAAAGTAACTGATATCGCACAAAAGCAGCAGGGGAAACGGAACGGGGAGAAAGCAGCGGCGAACTATGCACTGAGGATGATTTCTGCCAGAAAAACTCCGGAGAAGAGTCGCTACCACCTGCATTATCTGGTGTGGAATAACAAACACCGGCAGCTGGAGAAAGAGCTCTCAGTGCGTGAGCAGGTCGATTTGGAAGTGTTGGACCCACGGGGCCGGACTCCTTTGCACCTTGCAGTGACGCTGGGTCATTTAGAATGTGCCCGTTTGCTAGTTCAGCATGGAGCCGATGTCAGCAAAGAAAACAGAAACGGTTGGACAGGTAAAAATGCAAAACACTCTAGCTGCTTTGCAATTTGGGTAGGCCTGCATTAATTCTAGCCAATATTTTAAGCTGAAGGTTACTTACAGTAATAGCAATTGTCAAATTAGTTTTATTGGTAATCTAAAACTCATACTGTCCAGAGTGAAAAACCTTTCATTGAAGAGAGTGTTTAATTcagttttaaatatacaaaacatatggcaaaatctttaaaatattatgtgttacAGCAGCAGTGAAAATGCATTCAATTGTGATATTGATGATAGAATTTCTCtcactggatcatttgaatcaatgagaaTTGTTAACTTTAGACTTGCTCTTTACTGATCAGTGGATTAGAGTtattaactgtagactcacttTGAACTGATCAGTTGAATCATTGAATCGTAAACTGTAGACTCATTCTGAACTGATCATTTCAATCATTAACTTGAACTCACTCAAACTCTAATCTGATCATTTAAATCAGAGACATTAAGTGAAGACttgctctgaacaaatcatttgaatctgtttattattagttgttaGATTCACTCTaagatcatttaaattaaatcgAATTATTAACTGTAGACCTCCTCTTAAATGATCATTAAAATCAGAATCATTTGCTGTAGACTCACTCTaaactgatcatttgaatcattaaatCATTAACTGTAGACTCGCTCTGAACAGATTATTCAAATCAGAAAGTCATTAACTGTAGATatgctctgaacagatcatttgaatcagttaatTTTTTACTGTTAGAGTCACTTGGATCAAagcatttgaattagtgaatcgtTAATTGTAGACTCGCTCTgatcaaatcatttgaatcagtgaattgttaactgTAGACTCGCTCTgatcaaatcatttgaatcagttaatCGTTAACTGTGGACTCACTCTGAACaatcatttgaataaaaaaaaa

Function

symbol description
ankrd13b Predicted to be located in late endosome and plasma membrane. Predicted to be active in cytoplasm. Orthologous to human ANKRD13B (ankyrin repeat domain 13B).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005737 cytoplasm cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050913-151 Predicted to be located in late endosome and plasma membrane. Predicted to be active in cytoplasm. Orthologous to human ANKRD13B (ankyrin repeat domain 13B).

Ensembl:

ensembl_id ENSDARG00000014652

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017115 False 3968 mRNA 0.48 15 28482862 28539650
TCONS_00017116 True 1452 mRNA 0.38 2 28482973 28510877

Neighbor

gene id symbol gene type direction distance location
XLOC_008571 pitpnaa coding upstream 57851 28410664 ~ 28425011 (+)
XLOC_008570 slc43a2a coding upstream 77120 28368644 ~ 28405742 (+)
XLOC_008569 si:dkey-118k5.3 coding upstream 117473 28355023 ~ 28365389 (+)
XLOC_008568 myo1cb coding upstream 129965 28268135 ~ 28352897 (+)
XLOC_008567 NA coding upstream 254428 28222431 ~ 28228434 (+)
XLOC_008573 NA coding downstream 8976 28548626 ~ 28551677 (+)
XLOC_008574 BX088540.1 coding downstream 58997 28598647 ~ 28627902 (+)
XLOC_008575 nova2 coding downstream 145975 28685625 ~ 28766824 (+)
XLOC_008576 gipr coding downstream 400702 28940352 ~ 28974120 (+)
XLOC_008577 clip3 coding downstream 449923 28989573 ~ 29006189 (+)
XLOC_008463 BX663520.1 misc upstream 7230580 21252191 ~ 21252282 (+)
XLOC_008564 NA non-coding upstream 318895 28160893 ~ 28163967 (+)
XLOC_008561 NA non-coding upstream 622843 27857395 ~ 27860019 (+)
XLOC_008560 NA non-coding upstream 676493 27803733 ~ 27806369 (+)
XLOC_008559 AL935164.1 non-coding upstream 688049 27794699 ~ 27794813 (+)
XLOC_008583 BX537104.1 non-coding downstream 622006 29161656 ~ 29271467 (+)
XLOC_008587 NA non-coding downstream 1013393 29553043 ~ 29643810 (+)
XLOC_008588 NA non-coding downstream 1055934 29595584 ~ 29597117 (+)

Expression


Co-expression Network