G138649


Basic Information

Item Value
gene id G138649
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 2149329 ~ 2153741 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU157535
GCTATGATCGTAGAGTTTTGAGAGCCCATGTCATTTTTGGCCGTGCAGAAGTACTGTCCATCATCCTTCTGACTGGCAGCTTTGATGGAGAATTCACAATCAAATCCTATAGAAGAGATGTTCCCATCTCTGATCTTAAACCAAGTGTAGTTTGTCACTGCAGGATTGGCATTGCTCTTACAGATCAGAGTCAGTGAGTTTCCTTGTTCTATCTTTCCAGATGTCAAAATGGTTATTTCGACATTCTTTGGACTATCTGTGGGGAGAAGCAACAGGATTGGTATTTGTAAGAGAACTTTGAAAGATTTGTATGTAATGGTGCAGTTGAAATGAGATGTTGCCTAAAATGTTACTGTGGGTTAGTGAAACCTCTTGAAACTATCTAGCTTCCTCATTTTTTTAAAATCCATATTTAACATGGAAACAGAGGTCAGTAGCAGTTGCTCTGCTCCCAAACCTAGCGAGCTGCCTAATAGGCTGCAATGGAACCTCCTAAGTGACCGAAGACATTAGGTGTGTTTGACTTGAAGCGGCGCTGCGTAGACCGATCGGTGTATGACATCAAAGTACCACGAGAGAGATTCTAAAGCATACAGAGCCGTTTGCTATCTAATCACTCTCGTGGTACTGTGATGTCAGATACCCAGACATCCCAGCTCTCCTGGAAGGTCCAGGAGTTTCCCACATATTGATACTGGCTCCCTGTCGCCCGCAAATTATATACAATATCCTGGAAATGAAACGGACGAGAGAGAGAAAGCCTGTTTCAGCCTGGTATTAAGATGCGCTTTCGGTGAACCGATCACAAGTGGTCAGCCAAGACGTGGTATTATCACAAGTTTCAAATGCGTTTTCAGTGACCACTTGTGGTTGGATTTTTCGCTTCTTATTCGTCACTCAACTACATCACATACCGTTCGGTCCGCACAGCGCAGGGTTGCCAAGTTTTCACAACAAAACTTGTCCAATTATTACTCAAAACTACCCCTATCGTGTTTTGGGGATCCCCCAGTAAAAATCGCATTCCTGGGGGTAAAATTCGCATTTTTGTGTTAAAGTAGCCCAATTCTGCAGGAAAACCAAGGACTTGGCAACACTGGCGCAGCGCCGCTTCAAGTCAAACACACCTTCTATTTTGGTGTTTGTAATCAGCAATGACGTATTTTTTGGACGGAGCCACAAAATAATAAAATATATCCCCCAATTGACTTTTTTGACAATTTCGAGTTTATGTCCTGTAGTTCTGACTTTTTTTCTCAGAATTGTGATATAAACTCATAATTGAGAGAAAATAGTCAGAATTTTAGATTACAAATTTTATAGATTTAAATGTTATCTATGTAAAAAGTTAGAGCTTTAAATATTATTTCATGCTGTAACTGTAGGGCTAATACATTATGTCCCCGAACTGTATATGTGAATATTATGGAGATCGATTGTTTACATCAAATTCATGCTTTAATAGTAGGCTAATTGTCACAAGTTTCATCAGTCCAGTCTGTCCGTTTAATGTTTAACTTCAAGGGGCATCGTCAATGACAGTATTTAGTAATTTCTTTTCTTTCTTTTTTTTTTATCTTACTGACCACAAACTTGTATGTTCGGCACAGTCTTTGCATCAGGAGTGTGTCTATGATGTCTTAAAATACTGCCTATTTAGGCAGCTTTCTAGGTTTTTGAACAAACCCAGGATGTGCTTTAAATAACAATCTAGCCTTAGGTTAAATGTAAACATACATCTCACATCAAGCAATAGTTCATCTGCTGAAGTCATGCTGCTGTTCTTCAGACCACAGGAGTAGTTGCCAAAATCATTGTGAGAGACAGAAGAGATTTGGAGCTCATTCTCAGTGGCTTGTGGAAGCAGAAGGTGGTTTTTAAACCAGGCAAACGGCCCTTGTTCCGGGGTACAGTTTTCTGTGCTGCATCTCAATGTCACAGAGTCTCCTTCATGGATGTGTCCATACACCTTTTGCGTTGTCACAGTTACTCTAAAAGGTAGAACTGTTAAAAGTGGTGTAGATTAATGAAATGTAATCAGAAATCAGACATTAAAAAACAAAATAAAATAAAGGTCACCAGTGCTAAACCAGCATCAGTTTCCATCCTGGCCTACGGTCTGCAATGGTAGACCAGCAGAACTGAAATTGTTCATGAAATTGGTTTGACCAACATAGTCCTACTGATTGAAGCTGGTTAACCAAGGAAATCTGGCTGGTTAAAGGATTAGTTCACCCAACAATGAAAATTTTGTCATTAATTACTCACCTTCATGTCATTCCAAACCCGTATAACTTTTATTCATCTTTGGAACACAAATGAAGATATTTTTGATGAAATCTGAGAGCTTTCTGCCCCTCCATTGACAGCTACACAACTACTACTTTCAAGGCCCAGAAAGCTAGTAAAGACATCATTAAAGTAATCCATGTGACTCCAGTGGTTTATCCTCAATTTTATAAAACACTGCTCTTGTGAATGCATGTTGGAGATTAATATTTTGTAAATGAAGTGGTAAATTATATATATATATATATAATTTTTTTTTTTTTTTTTTTTTTTTTTGCGCAAACAAAGCATTCGCATCACTTAAAAACTGAGGTTAAACCAGTGGAGTCACATGGATTACTTTAATGTCTTTACAACCTTTCCGGGCCTTGAAACTGGAAGTTGTATAGCTGTCAATGGAGGGACAGAAAGCTCTCAGATTTCCTTTAAAAATCTTCATTTGTGCTCCGAATATGAATAAATCTCTTAAGGGTTTGAGGGTGAGTAATTAATGACAGAATTTTCATTTTTTTAGTGAACTATAAGGCTATGGGTAAATCAGCACACCAGCATCCAAAACGCAACATATGCTGGTGACCTTACAACTGGGATTGTGGTCTGAGTTTTTATGTGTCATAAAAATTTGGTCTTTCATTTACCTGCTACGTTGAGGTATATGCCACCCGGTCCAGTATATTTTCCACGATAATAATTTGTTTCAAGGCGAAAGAAATATTTTCCAATGTCACTTTTAGAGACATTGTATAATTGCAAGGAGCAGTTTTTGTCTTGGTTTGCAAACACTGTTCTGTTTTTGTACAGTTGGTCAATCTCTGCCGCCTCTGAGTGATGGACAAATATTCCCTGCTGTGTTCCGTCTTGTTTCTGATGTTTATTTGGTTTGAACCATTTTGTAGTTTTAAGTGTTTGAAAAGATGGATAATCAAATGAGCAGGTGAAATCCACAGATGATCTTTCGAAAACACATATGGAACGAGGTTTGTATGAAACTGACCATGAAGCCAGAGCAGCTGAAACACACAAAAATGTTTGTTAAGGCTCCAGTAAGTCATCATTGCTCTGATTCTAATCATTGCTCCAGATGATTCTAACAGACTATCAATGATCAGATCTGACCAAAAAGTACAGCAGCAAATTGTAAAGTCCAGTGGTTCTAAACCAAGGGACCTCAGCAGTCAGCACACTTCCAAGGGAGTCACAAAAATGGCTTAAAATTATTTAAAATAAGACAAATCTTTATAATCTTTAAAAGCTTTATAATAACTAATAAGCTGTTTTAATTTGTTCTTTTAACAAATGTAATTTTTTAAGACCCAGTAATCCATGCTTTGGGATGGGAAACCTGTATGCTATATGAGGGTGTTTTAAAGGAATAATAATAATAAAAAATTAAAAGTCATGGAAATTTAGAGAATGATTTTTATTTTTTGTTTAGTTATGTCAAGCTCTAAAATATTTTATTGGGCAGAAACACTTAATCATGAATGACTGGAAACTTCATGTCATGTTATGAACTTCAATTATTTTAATTTTAATTAATTTAATTTATTTATCATTATTTTATTTAATTATTTCAATATATTCTCCCTCCTAGTTTATGTAAATAAAAAACTTTCAAAAAGGCAGCTTTGTCATTACAGCAGAAATATCTTAGCGAATGTTGTCTTTAAGTCAATAAGTTCACTATTTACTGAATAATATTATCAACAAATAAAAAAAAATACTCAAATAAATCAGAAACTCACCTGATAGAGACAGCTGCAGAAATATGCTGATGAAAAACATGTGTTGTCCCTTTAAAGGTTTTGGCTAAGAAATCACTTGTTTGTTTAGATGCTTCAGTAAGCTTCAGTATTTCCCCATGACAGGCCTAATATAAGCTTGCATGTTGCATCAATAAACGGATATCCTTGGTCCATGGTGAAAACTTCCTTAAATCAGTGCTTGTAATTTAATTCTGTTATTCTATGCTTAAATTATAAGAACATATGGTTAGATTTGAAGCACTGGGGGGCAGAGCACGTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU157535 True 4314 lncRNA 0.37 2 2149329 2153741

Neighbor

gene id symbol gene type direction distance location
CI01000027_02125080_02146147 NA coding upstream 2827 2124834 ~ 2146502 (+)
CI01000027_02106256_02118045 NA coding upstream 30831 2106185 ~ 2118498 (+)
CI01000027_02083444_02085743 NA coding upstream 63549 2083143 ~ 2085780 (+)
CI01000027_02059709_02072254 GAPDHS, G3PT, GAPDH coding upstream 76924 2059377 ~ 2072405 (+)
CI01000027_02040721_02047487 NA coding upstream 101763 2040621 ~ 2047566 (+)
CI01000027_02156853_02161914 RBM42 coding downstream 3112 2156853 ~ 2162004 (+)
CI01000027_02194222_02218628 ARHGAP30, ARHGAP33 coding downstream 40481 2194222 ~ 2219765 (+)
CI01000027_02230213_02233471 NA coding downstream 76472 2230213 ~ 2233491 (+)
CI01000027_02234729_02237937 NA coding downstream 80988 2234729 ~ 2238114 (+)
CI01000027_02242334_02250969 DCAF13 coding downstream 88593 2242334 ~ 2251188 (+)
G138693 NA non-coding upstream 29536 2119198 ~ 2119793 (+)
G138672 NA non-coding upstream 67277 2077080 ~ 2082052 (+)
G138686 NA non-coding upstream 96394 2052580 ~ 2052935 (+)
G138627 NA non-coding upstream 183723 1965332 ~ 1965606 (+)
G138625 NA non-coding upstream 187473 1961552 ~ 1961856 (+)
G138656 NA non-coding downstream 828 2154569 ~ 2155082 (+)
CI01000027_02254195_02308930 NA non-coding downstream 99807 2253903 ~ 2310086 (+)
G138669 NA non-coding downstream 117628 2271369 ~ 2324059 (+)
G138675 NA non-coding downstream 173151 2326892 ~ 2329110 (+)
G138683 NA non-coding downstream 178248 2331989 ~ 2335650 (+)
G138515 NA other upstream 472469 1664408 ~ 1676860 (+)
G138436 NA other upstream 641513 1506961 ~ 1507816 (+)
G138290 NA other upstream 1150148 995970 ~ 999181 (+)
G138247 NA other upstream 1279754 855388 ~ 893121 (+)
G138238 NA other upstream 1317646 829774 ~ 831683 (+)
G138915 NA other downstream 1330646 3484387 ~ 3486647 (+)
G138953 NA other downstream 1348331 3502072 ~ 3520065 (+)
G140436 NA other downstream 2583657 4737398 ~ 4774262 (+)
G140440 NA other downstream 2626676 4780417 ~ 4785660 (+)
CI01000027_05050310_05055447 NA other downstream 2895182 5050310 ~ 5055755 (+)

Expression


Co-expression Network