G138683


Basic Information

Item Value
gene id G138683
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 2331989 ~ 2335650 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU157569
ATCGACTTACGCCAAAAGAGTAACCCCTGACGCAATGTAGGAGTAGCATAAGCTTTGACGCTTCTTGTTGTTCAAATAGGGCTGGGCAACAAACTCAAGCTCCACTTCTCTTATATCAAAATCCTCAGACAATTCTTGTTTTAGACTTCTAATTCGTTTTTGTTTTGCTCTCTCCTCTGCTCTACCGCGTTTCATCAATACGTCATTTGTCGGGTTAGAGTTCACTCTTTCGCCATAAATCGATGCGTACTGCCGTCTGCCGGAAGCTAGTTATTTTAGTTTTTAAAGTTTTAAATATGAACATTTTTCTTACACAAATTCATCGCTTTGCTTCAGAAGGCCTTTATTAACCCCCCGGAGCCGTGTGGTTATCTTTTACGATGGATGGTTGCACTTTTTTGGGCTTCAAAATCTCATCTTCTATTCACTGCCATTATAAAGCTTGGGAGAGCCAGGACATTATTTAATATAACTCAAATTGTATTCGTCTGAAAGAAGATAAGTCATATACACCTAGGATGGCTTGAGGGTGAGTAAACCATAGGGTAATTTTAATTTTTGGGTGAACTAACCCTTTAAAACCAAAGATGTTTATCAGTGATTGTATGTCAAGAGCAGGAACACTGCGTTTTGTTTTGTGATTACACCTGAATGAATAGCAAGTCTCACAAACAGCGCTAAAGTGGTAGATTGAACCGCTCATCTGTGTGAAGACTTGCACGAGCCACAAGAGAACACTGTTGCCTTCTGCCACTAATAAGAGCGGCAACAAACACAAGCATGATTTCAGAAACAACACATTCCAGCATCAGATCACGTCTTTAACTTAAATGAATAAAATGAATACTCTACTAGTCAACTGGAGAGGCTTCCTTTCTATTAGGTACATCCATACCATGAGATGTTTAAAAAAAGTGGTGGGGACAATATCGACCCTGGCAAAAAGTGGTGGGAAATTGTCCCGACTGTCACACAATGGATGATAATATTTATCCACAATTCTCAATCTGCAGTATTCATCTACATACATACTATTTAGCATTTTAAAACTAGGAAGTTCTGTGAACAGTTGTGTGCAGCGACTCAAATGAATCAGAGTTTTGAAATTACTAACTGAAGTGTGCAGTTTGAAATGATTTAAGAAATTAATTGACCAACTCTAGCATTCTATAGCCTAATAATTCATTACTCTTGTGCATCTTTAGGGACATTTTTGTCTTTTACTAGTATGGTAACCACTATAGTATGACTATCTAGTAGTTTTTAGAGGGGGGCTACAAGCATTTTAGATGGTATGGTATGGTAGATTTCCCCTACGCACCTGACTTAAGTTAAACTCCTCTTCGACACCTACAAATTTATACTCGACTACTAGGCATCTTTGACACCTGCTTCGAGTCGGATGAACACTATCACTTGGGAATAAAGTCTGTTCCACTTAAGCACCATTACTTGGGAATAGAAGTAAAGATCTCTAGTGTCTAGTCTGCCGAGCAGCAGTAATAAGACAGACTCCAGACAATGTCTTCGAATATGCTTTAATCATGGCCTGGAGGATCTCAGAACAATTTCAGAAAGAATCCCCTCAACCAAAAGAGTACAGCAATTTATATAGAATAAGTGCATGGCAAAGGTGACATGATTCATTACATCTTTTTTCTCTAATATGATTGGTTCTCTGTTACTACGTAAAAGCAAATTTGGATTCCTTGATACTTCAACGTGTTGCTAGGGTCATGAGGTTAAATGTATATGTATATTCAGACAGCTGTCTAGTTTTGTGGTGTAGTAGTGTTGGGGACATGTAGTTTTCAAAAGCATATAAATGTATGCTTTTGATTCAGTTATGAATCATTAAAAAATTCCATCACAATGGGCATTTTGTTCAGGATATTTTTTTCTGTTAAATAGACTTTGACTGGCCAGAAAATGCTAAATTTGAGAGTACAGTGAAGTGTGAATGCAGGTTGTAGAAAACACCCTTTGTTAGTGTGCTGGACAATCTGTCTGTGAGAAATCAGTATGGAGCTTTATCCTAGTTTTACACACTAAACTACAGTTAACATAGGTAAAAATCACATGTAAGTAGGTCAGTTCACAATGACACTTCTTTTCCTCTAACCCTCCCTTCCTGTATCCACACAGCTTTCACACCCAGGAAGAGAGACTACTAGTTAGCCTCGGTGCTAATCATGCTAAGCATAAAAATTTGCAGTAGGATAGTGTGCAGATAGGAATAATGCTGTATAATACGTGACCTGTGCAATAGTTTAAATCTGTCCACCTGCATACTAAACACAGATGTAATGCTCAGCTGTGCTATCATTGCTTTGGACGGGGCAGGTGGCGTTAGCGATTACATGAGCATCCAGCGCTTTTCAGATCATAAACTGGTGTGTGATGTAATGCATTGGCCTGCCAGGTGTGTGTGCTTGTGGAAACTATGAATAGAACTGAAGTGAATGGAAGTGAATTCATAACTCATTTTGAAGAAGTACATTGTTCAGGTTTATTATGCAATAATGCTGGCTGTGTATTAGGTTCATACATTTAAAAACTGCTGTTCCTCACCTTTTTTTTTCAGAAACACACACACACGATCCCAAACACAAACAGGCGTCTGCGGTGCTCTGGATTTGTGAATGGTGCACAACTGTGTCAGGCTGCTGTTGAATAATGCAACAGGACATGGCGGCCATAGTAAAAACCCAGAGCAGAGCCCAGGGGACGCGGGAGATACGATCATTAATCAGTCAGTACATGTTCATGCTCAGAAACAGCTCACAGATCTCTCCAGACCCTTTAACAGCACACTAAAGATCACAGCACCCTGCAGAAAAACAGATGGCTATTATTGAACTGTGGCTTCCTCGTCGCTAGCTAGTGCGCTAGCTTCATATGCAGGTCATAAGAATGTTTCAGTTTTGCTTTGATATTTGCATTACAAAGGAGAAATTTGTTAAATGTATTGCTCAGAAGTTGCGCTTTCATACCTCAGGAGACTCAGGAATTTCTCAGTTGTTGTTTCATTCAAGTATCAACATTGTCTCTGATGTTTCTCCTGAAAGTCCTTAGGAGAAATAAAAAGACATGGATGAGATGATTATACACATACAGTAATAGCTTAGAGCTACAATAGGCTATAAAACTAATTTGGATAGTATAGCTCAGGTTATATGATTTGAGAAGAATTTGATTAGAAATTTTTGAGTTCATGTTGAGAATTTGCTCAGAATTGATTACAGGAGAATTTGAGAATGCTCAGATTATTTGTTTTCAGAAGAATTTGGTGACAATTGTTCGTAATATTTAAGCATGGGAAACAATTCTCACTTTTAAGTAGTTGCTTATTAGCATGCATACTGGCTGTTTATAAGTACTTATAAAGCACATATTAATGTCTTATTCTGCATGACCATATTCTACATCCCTAAATCCTACCCCATACCTAAACTTAAACGCTACAACAACTACCTTAATAACTATTAATAAGCAGTAAATTAAGAGTTTATTGAGGCAAAAGTCATAGTTAATAGTAGGGATGCACCGATACCATTTTTAAGGACCGAGTACGAGTACCGATACTTTTTTTTCTGGTACTCGCCGATACCGATGCCTATACATTTATTTATTTCTCTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU157569 True 3639 lncRNA 0.38 2 2331989 2335650

Neighbor

gene id symbol gene type direction distance location
CI01000027_02254195_02308930 NA coding upstream 21903 2253903 ~ 2310086 (+)
CI01000027_02242334_02250969 DCAF13 coding upstream 80801 2242334 ~ 2251188 (+)
CI01000027_02234729_02237937 NA coding upstream 93875 2234729 ~ 2238114 (+)
CI01000027_02230213_02233471 NA coding upstream 98498 2230213 ~ 2233491 (+)
CI01000027_02194222_02218628 ARHGAP30, ARHGAP33 coding upstream 112224 2194222 ~ 2219765 (+)
CI01000027_02337884_02402668 RIMS2 coding downstream 2234 2337884 ~ 2402668 (+)
CI01000027_02419674_02422700 NA coding downstream 83983 2419633 ~ 2423128 (+)
CI01000027_02429134_02451902 RIMS2A, RIMS2 coding downstream 93356 2427563 ~ 2452535 (+)
CI01000027_02455787_02458435 DCSTAMP coding downstream 119503 2455153 ~ 2459044 (+)
CI01000027_02492454_02508459 NA coding downstream 156427 2492077 ~ 2508602 (+)
G138675 NA non-coding upstream 2879 2326892 ~ 2329110 (+)
G138669 NA non-coding upstream 7930 2271369 ~ 2324059 (+)
G138656 NA non-coding upstream 176907 2154569 ~ 2155082 (+)
G138649 NA non-coding upstream 178248 2149329 ~ 2153741 (+)
G138651 NA non-coding downstream 5554 2341204 ~ 2345765 (+)
G138653 NA non-coding downstream 51051 2386701 ~ 2392650 (+)
G138740 NA non-coding downstream 186856 2522506 ~ 2524556 (+)
CI01000027_02530086_02589227 NA non-coding downstream 216923 2529638 ~ 2589476 (+)
G138515 NA other upstream 655129 1664408 ~ 1676860 (+)
G138436 NA other upstream 824173 1506961 ~ 1507816 (+)
G138290 NA other upstream 1332808 995970 ~ 999181 (+)
G138247 NA other upstream 1462414 855388 ~ 893121 (+)
G138238 NA other upstream 1500306 829774 ~ 831683 (+)
G138915 NA other downstream 1148737 3484387 ~ 3486647 (+)
G138953 NA other downstream 1166422 3502072 ~ 3520065 (+)
G140436 NA other downstream 2401748 4737398 ~ 4774262 (+)
G140440 NA other downstream 2444767 4780417 ~ 4785660 (+)
CI01000027_05050310_05055447 NA other downstream 2713273 5050310 ~ 5055755 (+)

Expression


Co-expression Network