XLOC_008574 (BX088540.1)


Basic Information

Item Value
gene id XLOC_008574
gene name BX088540.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 28598647 ~ 28627902 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017117
AGGTTAGTCACTGCTATTTGAAGTCATCTGAGATATCATCATTTCCCACTTCACTTATTTATTTGTACCCTTTGTCTTTACCCCCAACACCTCAGACTAACAAAGGCTCACCTGTTGGAAGGTCCCTTTAGTGGTGACCAGATGGTAGACCATGTAGGAAGGCACACAGATGAAGGAAGAGACTCCAATACAGTAACCAAGGACCGTGGTCCAGAAAGGGTACAGGTGGGGGAACTCGTCCAACATGGCTGTAATTACCCCTTCCAGACCTGCAAACTGCAGCAAGAGGCAGGGGATGACAGAAAAGTTTCAGGTAGAAGACAACTCCTCTCCATGCTCCTGGCAGGGTGGCCCCTCTTATCAACAGGATCAGCAACACCAGGTTTCCAGAACATCATACCTTGCCAGAGGTCTTGACCCCCTTCCAGATGCTGAAGTAGACAACAGTAAAGATGAACAAAAGACAAAGGGCTAGCTGCCAGCTCACCCAGCCCAGTTGATGAAGACCAGGAGATAGATGAACCTGCAACACCTGCCGGCTAAGGACAAGAAAGAAGTTGGTTTGCAGTTTATCAAGggtacccatcttctgatgactacttccagcaagataacgcgccatgtcataaagtgtgaaacatctcagactgatttcttgaatatgacaatgagtttgctgtactcaaatggcctccacagtcaccagggcTCAATCCAACAGAGAACCTTTGAGAAATGgtagaacgggagattcgcatcatggacgtgcagccggcaaatctgcagcaactgcatgatgctaccatgtcaatatggaccaaaatctctaaggaggATTTCTATTGTCTTGTTAAGTCTATGCTATGAAGGATGAAGGCAGTTTTAAATGCAAAGGGGTAAAACCCGGTACTAGttagttgtacctaataaagtggccggtgaatataTTTTAGCTTAGTTTAAAATGTCTTgcttaattaaatgttttttctctGTAAACAGACTATGTGTACAAATTCACTGACATTACTATGGCACAGAC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000097843

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017117 True 1042 lncRNA 0.45 6 28598647 28627902

Neighbor

gene id symbol gene type direction distance location
XLOC_008573 NA coding upstream 46970 28548626 ~ 28551677 (+)
XLOC_008572 ankrd13b coding upstream 58997 28482862 ~ 28539650 (+)
XLOC_008571 pitpnaa coding upstream 173636 28410664 ~ 28425011 (+)
XLOC_008570 slc43a2a coding upstream 192905 28368644 ~ 28405742 (+)
XLOC_008569 si:dkey-118k5.3 coding upstream 233258 28355023 ~ 28365389 (+)
XLOC_008575 nova2 coding downstream 57723 28685625 ~ 28766824 (+)
XLOC_008576 gipr coding downstream 312450 28940352 ~ 28974120 (+)
XLOC_008577 clip3 coding downstream 361671 28989573 ~ 29006189 (+)
XLOC_008578 si:ch211-137a8.2 coding downstream 396993 29024895 ~ 29071870 (+)
XLOC_008579 si:ch211-137a8.4 coding downstream 458053 29085955 ~ 29091807 (+)
XLOC_008463 BX663520.1 misc upstream 7346365 21252191 ~ 21252282 (+)
XLOC_008567 NA non-coding upstream 370213 28222431 ~ 28228434 (+)
XLOC_008564 NA non-coding upstream 434680 28160893 ~ 28163967 (+)
XLOC_008561 NA non-coding upstream 738628 27857395 ~ 27860019 (+)
XLOC_008560 NA non-coding upstream 792278 27803733 ~ 27806369 (+)
XLOC_008583 BX537104.1 non-coding downstream 533754 29161656 ~ 29271467 (+)
XLOC_008587 NA non-coding downstream 925141 29553043 ~ 29643810 (+)
XLOC_008588 NA non-coding downstream 967682 29595584 ~ 29597117 (+)
XLOC_008591 dre-mir-99-1 non-coding downstream 1167681 29795583 ~ 29795666 (+)
XLOC_008592 dre-let-7c-1 non-coding downstream 1167921 29795823 ~ 29795929 (+)

Expression


Co-expression Network