XLOC_008575 (nova2)


Basic Information

Item Value
gene id XLOC_008575
gene name nova2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 28685625 ~ 28766824 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017119
taatgacaacaaaaaataGGTTAAACACTTATAGATTAGAGAGAGACGAGCTGcgcatttaaaacttttatttatttatttttaacatctttctgcctatttattttacagtgatgCTCTTTCATTTTTATCACCACCTCCTCCTCCAGTATTGTCATGTGACACGCAGGATTTATACTCCACTTTGCCGGAAAAAAATCAAACCTCGACCAATCACGGTTCGAGGGAGGCGTGTCTGCGGCTCCACATTTGACAGCCGCGCACTCGGCTCCGCATGACGTCACCCGCTGCTCTGCGCTCCAGCAGAAACGCGCAAAGATGCTCTGAAAGCAAGACTGCAGCATCTCCGAGTCCGAGCCTCCAGAAACATCGCATCTCCGTCAAGCGCTCGTGCGGCGCTTCAACACACCATCCAAGCTCCATCCGCAGGGTTCATCCACCTGCATGCGGGATCCGCTTTCTTTCAGTTTCGCCTCTTGTACATTTCCTCGTGCTATTTATTATTCGCGCATCTTCCCAGCTTTTAGCAGTGAGAGTTCTTGCTGACCGCTGAGGTCATATATTGTTTTCCAGCAGGAGAGCGCCATCGCAGAGCCGCAAAACGAGGACGATTCCCACATCACTTGTTATTAATATCAGTCCAGCCTCGAGCCTCTGGATATTTATGCGTCTTTCGTTCTCTATCTAGCGCTGCTACGGAGGATCGACGCACCCCAAAAACCTTCATATCATCGTGGTTTCACATTTAGAAAACAGCATATCTGCGTATTGTTTGTAGGGGAGACGAGACCGAGCCTAAAGCTTCTTTATAAAAAATGATGGCCGGTGGGGCAGTGCAGCAAAACGGGATTTTCTCCAATCCGCATCATCACAATCAACAGCCGCACATGGAGTCTGATCCCCCCGATTCCCGCAAAAGACCCCTGGAGACCCCGACGGAGGCCAGCAGCACCAAGCGCACAAACACAGGAGAGGAAGGCGAATATTTCCTGAAGGTGCTGATTCCAAGCTACGCCGCCGGCTCCATTATTGGCAAGGGTGGTCAGACTATCGTCCAGCTACAGAAAGAGACAGGGGCCACCATCAAGCTCTCCAAATCCAAAGACTTCTACCCGGGAACAACAGAGCGCGTGTGCTTGATCCAGGGCACCGTAGAGGCGCTGAACAATGTCCACGACTTCATTGCAGAAAAGGTGCGCGAGATGCCGCAGAGTGCTCAGAAAACAGAGCCAGTTAGCATTCTTCAACCACAGACTACCGTCAACCCTGATCGTGTCAAACAGGCAAAGCTGATAGTGCCGAACAGCACGGCAGGACTGATCATTGGCAAGGGTGGAGCCACGGTGAAGGCTGTCATGGAACAGTCCGGCGCCTGGGTCCAGCTTTCACAAAAACCCGATGGCATCAACCTGCAGGAACGTGTTGTTACCATCAGCGGGGAGCCTGAGCAAAACCGCAAAGCTGTAGAGATCATTGTGCAGAAGATTCAGGAGGATCCACAAAGCAGCAGCTGTCTGAACATCAGCTACTCCAACATTTCTGGCCCAGTGGCCAACTCTAACCCCACCGGATCCCCGTACGCCAACTCAGCAGAGGTGATGCCAGCTGCGGCCGCAGCAGCAGCAGCCACAGCCTCCAGTCTCCTGGGGCAGGCCAGTCTGGCTGGAGTGGGTGCTTTCCCCACCACCATGTCCAGCTTCTCAGGGAATGACCTGCTGGCTATCACGTCGGCACTGAACACGTTAGCCAGCTACGGATACAATACCAACTCCCTGGGTCTTGGGCTCAACCCTGCGGCTGCCTCAGGAGTCCTTGCTGCTGTAGCCGCAAGCGCTAATCCTGCTGCAGCTGCGGCCGCTAACCTGCTAGCCTCCTACGCCAACGACGCATCCACTAGTGCTGGCCACCCAGCGACCAGTCTGGGAGGTTTCACGCTAGGCTCACTCGCTGCCGCCACTGGAGCCACCAACGGTTACCTGAGCGCCGCTTCCCCTCTGGTGGCCAGCTCCCTACTGGCCACAGAGAAGCTGGCCGAAGGGGCCAAAGATGTGGTGGAGATTGCAGTGCCGGAGAACTTGGTAGGCGCCATTTTGGGGAAAGGAGGCAAAACGCTTGTGGAGTACCAAGAACTGACGGGAGCCCGCATTCAGATCTCCAAAAAGGGAGAGTTTGTTCCTGGCACCAGAAACCGTAAAGTCACGATCACCGGATCGCCAGCCGCCACACAAGCAGCCCAATATCTTATCAGCCAGCGAATCACATATGAGCAGGGTGTGAGGGCCACCAATCCGCAGAAGACTTTCTCCTGA
>TCONS_00017118
taatgacaacaaaaaataGGTTAAACACTTATAGATTAGAGAGAGACGAGCTGcgcatttaaaacttttatttatttatttttaacatctttctgcctatttattttacagtgatgCTCTTTCATTTTTATCACCACCTCCTCCTCCAGTATTGTCATGTGACACGCAGGATTTATACTCCACTTTGCCGGAAAAAAATCAAACCTCGACCAATCACGGTTCGAGGGAGGCGTGTCTGCGGCTCCACATTTGACAGCCGCGCACTCGGCTCCGCATGACGTCACCCGCTGCTCTGCGCTCCAGCAGAAACGCGCAAAGATGCTCTGAAAGCAAGACTGCAGCATCTCCGAGTCCGAGCCTCCAGAAACATCGCATCTCCGTCAAGCGCTCGTGCGGCGCTTCAACACACCATCCAAGCTCCATCCGCAGGGTTCATCCACCTGCATGCGGGATCCGCTTTCTTTCAGTTTCGCCTCTTGTACATTTCCTCGTGCTATTTATTATTCGCGCATCTTCCCAGCTTTTAGCAGTGAGAGTTCTTGCTGACCGCTGAGGTCATATATTGTTTTCCAGCAGGAGAGCGCCATCGCAGAGCCGCAAAACGAGGACGATTCCCACATCACTTGTTATTAATATCAGTCCAGCCTCGAGCCTCTGGATATTTATGCGTCTTTCGTTCTCTATCTAGCGCTGCTACGGAGGATCGACGCACCCCAAAAACCTTCATATCATCGTGGTTTCACATTTAGAAAACAGCATATCTGCGTATTGTTTGTAGGGGAGACGAGACCGAGCCTAAAGCTTCTTTATAAAAAATGATGGCCGGTGGGGCAGTGCAGCAAAACGGGATTTTCTCCAATCCGCATCATCACAATCAACAGCCGCACATGGAGTCTGATCCCCCCGATTCCCGCAAAAGACCCCTGGAGACCCCGACGGAGGCCAGCAGCACCAAGCGCACAAACACAGGAGACAGATGCAACCAAGCGGCCATCCATGATCCACCATTTTCATCAGATATTGTCGGATTTCAcgAGGAAGGCGAATATTTCCTGAAGGTGCTGATTCCAAGCTACGCCGCCGGCTCCATTATTGGCAAGGGTGGTCAGACTATCGTCCAGCTACAGAAAGAGACAGGGGCCACCATCAAGCTCTCCAAATCCAAAGACTTCTACCCGGGAACAACAGAGCGCGTGTGCTTGATCCAGGGCACCGTAGAGGCGCTGAACAATGTCCACGACTTCATTGCAGAAAAGGTGCGCGAGATGCCGCAGAGTGCTCAGAAAACAGAGCCAGTTAGCATTCTTCAACCACAGACTACCGTCAACCCTGATCGTGTCAAACAGGCAAAGCTGATAGTGCCGAACAGCACGGCAGGACTGATCATTGGCAAGGGTGGAGCCACGGTGAAGGCTGTCATGGAACAGTCCGGCGCCTGGGTCCAGCTTTCACAAAAACCCGATGGCATCAACCTGCAGGAACGTGTTGTTACCATCAGCGGGGAGCCTGAGCAAAACCGCAAAGCTGTAGAGATCATTGTGCAGAAGATTCAGGAGGATCCACAAAGCAGCAGCTGTCTGAACATCAGCTACTCCAACATTTCTGGCCCAGTGGCCAACTCTAACCCCACCGGATCCCCGTACGCCAACTCAGCAGAGGTGATGCCAGCTGCGGCCGCAGCAGCAGCAGCCACAGCCTCCAGTCTCCTGGGGCAGGCCAGTCTGGCTGGAGTGGGTGCTTTCCCCACCACCATGTCCAGCTTCTCAGGGAATGACCTGCTGGCTATCACGTCGGCACTGAACACGTTAGCCAGCTACGGATACAATACCAACTCCCTGGGTCTTGGGCTCAACCCTGCGGCTGCCTCAGGAGTCCTTGCTGCTGTAGCCGCAAGCGCTAATCCTGCTGCAGCTGCGGCCGCTAACCTGCTAGCCTCCTACGCCAACGACGCATCCACTAGTGCTGGCCACCCAGCGACCAGTCTGGGAGGTTTCACGCTAGGCTCACTCGCTGCCGCCACTGGAGCCACCAACGGTTACCTGAGCGCCGCTTCCCCTCTGGTGGCCAGCTCCCTACTGGCCACAGAGAAGCTGGCCGAAGGGGCCAAAGATGTGGTGGAGATTGCAGTGCCGGAGAACTTGGTAGGCGCCATTTTGGGGAAAGGAGGCAAAACGCTTGTGGAGTACCAAGAACTGACGGGAGCCCGCATTCAGATCTCCAAAAAGGGAGAGTTTGTTCCTGGCACCAGAAACCGTAAAGTCACGATCACCGGATCGCCAGCCGCCACACAAGCAGCCCAATATCTTATCAGCCAGCGAATCACATATGAGCAGGGTGTGAGGGCCACCAATCCGCAGAAGACTTTCTCCTGA
>TCONS_00017120
GCTCCGCATGACGTCACCCGCTGCTCTGCGCTCCAGCAGAAACGCGCAAAGATGCTCTGAAAGCAAGACTGCAGCATCTCCGAGTCCGAGCCTCCAGAAACATCGCATCTCCGTCAAGCGCTCGTGCGGCGCTTCAACACACCATCCAAGCTCCATCCGCAGGGTTCATCCACCTGCATGCGGGATCCGCTTTCTTTCAGTTTCGCCTCTTGTACATTTCCTCGTGCTATTTATTATTCGCGCATCTTCCCAGCTTTTAGCAGTGAGAGTTCTTGCTGACCGCTGAGGTCATATATTGTTTTCCAGCAGGAGAGCGCCATCGCAGAGCCGCAAAACGAGGACGATTCCCACATCACTTGTTATTAATATCAGTCCAGCCTCGAGCCTCTGGATATTTATGCGTCTTTCGTTCTCTATCTAGCGCTGCTACGGAGGATCGACGCACCCCAAAAACCTTCATATCATCGTGGTTTCACATTTAGAAAACAGCATATCTGCGTATTGTTTGTAGGGGAGACGAGACCGAGCCTAAAGCTTCTTTATAAAAAATGATGGCCGGTGGGGCAGTGCAGCAAAACGGGATTTTCTCCAATCCGCATCATCACAATCAACAGCCGCACATGGAGTCTGATCCCCCCGATTCCCGCAAAAGACCCCTGGAGACCCCGACGGAGGCCAGCAGCACCAAGCGCACAAACACAGGAGACAGATGCAACCAAGCGGCCATCCATGATCCACCATTTTCATCAGATATTGTCGGATTTCAcgAGGAAGGCGAATATTTCCTGAAGGTGCTGATTCCAAGCTACGCCGCCGGCTCCATTATTGGCAAGGGTGGTCAGACTATCGTCCAGCTACAGAAAGAGACAGGGGCCACCATCAAGCTCTCCAAATCCAAAGACTTCTACCCGGGAACAACAGAGCGCGTGTGCTTGATCCAGGGCACCGTAGAGGCGCTGAACAATGTCCACGACTTCATTGCAGAAAAGGTGCGCGAGATGCCGCAGAGTGCTCAGAAAACAGAGCCAGTTAGCATTCTTCAACCACAGACTACCGTCAACCCTGATCGTGTCAAACAGGCAAAGCTGATAGTGCCGAACAGCACGGCAGGACTGATCATTGGCAAGGGTGGAGCCACGGTGAAGGCTGTCATGGAACAGTCCGGCGCCTGGGTCCAGCTTTCACAAAAACCCGATGGCATCAACCTGCAGGAACGTGTTGTTACCATCAGCGGGGAGCCTGAGCAAAACCGCAAAGCTGTAGAGATCATTGTGCAGAAGATTCAGGAGGATCCACAAAGCAGCAGCTGTCTGAACATCAGCTACTCCAACATTTCTGGCCCAGTGGCCAACTCTAACCCCACCGGATCCCCGTACGCCAACTCAGCAGAGGTGATGCCAGCTGCGGCCGCAGCAGCAGCAGCCACAGCCTCCAGTCTCCTGGGGCAGGCCAGTCTGGCTGGAGTGGGTGCTTTCCCCACCACCATGTCCAGCTTCTCAGGGAATGACCTGCTGGCTATCACGTCGGCACTGAACACGTTAGCCAGCTACGGATACAATACCAACTCCCTGGGTCTTGGGCTCAACCCTGCGGCTGCCTCAGGAGTCCTTGCTGCTGTAGCCGCAAGCGCTAATCCTGCTGCAGCTGCGGCCGCTAACCTGCTAGCCTCCTACGCCAACGACGCATCCACTAGTGCTGGCCACCCAGCGACCAGTCTGGGAGGTTTCACGCTAGGCTCACTCGCTGCCGCCACTGGAGCCACCAACGGTTACCTGAGCGCCGCTTCCCCTCTGGTGGCCAGCTCCCTACTGGCCACAGAGAAGCTGGCCGAAGGGGCCAAAGATGTGGTGGAGATTGCAGTGCCGGAGAACTTGGTAGGCGCCATTTTGGGGAAAGGAGGCAAAACGCTTGTGGAGTACCAAGAACTGACGGGAGCCCGCATTCAGATCTCCAAAAAGGGAGAGTTTGTTCCTGGCACCAGAAACCGTAAAGTCACGATCACCGGATCGCCAGCCGCCACACAAGCAGCCCAATATCTTATCAGCCAGCGAATCACATATGAGCAGGGTGTGAGGGCCACCAATCCGCAGAAGGTGGGCTAAAAACAGGGAGTATGAAAAaaaggagagagaaagagtggGGGATGGGGAAGATACAGAGAAAGATTGAGGGCGACCGAAATAAACCACATTCTTTGTGGGAAAATctcagtattaaaaaaaatatgaaaaaaaatcctcTCAAAGTGGAAAATTTGGaaaagaaaaatgtgtaaaatgtaaatatgggTTTATTTCTTaagtttttggatttttttattggTTGATTTTTGCTTTTGGTTTTTCTTTTGGGCTTTTTGTGCATTTTTCTGGACAGCAGTGAATGGCATTTCAACCTGGCATGCTGCCGCGCTGCAGTTCCCAGCAGGTGGGCAAGGTGGTCGGATGGGGGACACTGGGGTGGAGCAAACCCAGGAATCGGCCCTTTCCCCACCCCCATCCCCTCCTAGCTGACAGATTCTTGTTCTTTATATTTTATTCCTTAGTCTAACACCCACCCTTTCGCCCGTGCCCTCTCTTTAGAAGGGTCtgagactgaatatatatatatatacatatatatcccCCCTAGCCTGTGAAACCCCATACCCCACCCCAGCCACCCCTCGTCCCAGCCCTAATGGTCCCAGCCAGCTAGGGCAAGGGATGTGAGGCTGCTGCAGGGTCTCTCAGCGCCACTAGACATCTACCTGGGGTTCCAGTTTGACCAGGTGCATGCCACTACAAATGTTGTTAGCATAAGGGAAGCTTGTAGATCATGTTGCGGACATAGGCCAGGATGCAAAAGGCACCTGAATCTTTCGTACCAGAGCTCCTAGAGATTGTTGGCATTTCTCTAAGGGATTTGAGGTCTGGTGTTTATACaaatactattatcattattattattactactactattattattattacaaaatatcaccatcaactttatttattaatatgatttcaCCCATAAGGACTgaagtatttgttttgttttttcttaatcTGTGAATTCAGGTTGACATGAATGTAAAGACAATATTttggatttagttttttatttaagtaGATCGAATCGTGTGTCCATGTAATATATGTCTTATTTAACGTCCAGTGAAAACTGCACCGTCGGCACCAACAGAGAGAATAGGGGCAGATGTACTGTACAgtgatataaaaaaacaacaacacacacactctcagcaaACTATTACCAGATTTAAATGCTGAAAATGCAACGAAGCATACACAAACTTGAAATCACAGTGGGACTAGACAATTTATTCACATATCTACTGAACGAGAATGTAGGTCTTTGCACAAGTCCAAGGGAGTGTATCAGAATGCGACTTTGTATGAAAGCCAATCCTTTTCTATAACGTCCCAAAACATCTCCCCCCAGCTTTACTCTATGCTGCCCTTCTGCAGTGGGAGACATTGTGCACTTTGAGCCACTGCAGTTGAATATCTGCGCAAATCTGCTGGAAAATTTGCCGAGATATTCCCTATCAAATCAGAAACTGTCCCTCAGAGCTCTGAGGCGTTTCATGAACACATACTACTGAACTACTATGAACAAATTCTGACCAGCACAGGTTGATTACTAACATGGTCTGTCCTGTAAATTGCAGGTTGTCTGCtagagaaaacatttttatgTGGTGACCATTTTCGTAattgccacatttttttttaaaaaactgtacACTTGAGTTACCAATCGATTTCTGGTTGCATTATTCTAACTAGGCTGCCATGTGAAAATCCTCCTGTGCAGATCAGAACTACCCAAGTGCGACGTATGTGCTGCTAATAAGGtcctgtttgctttttgttttaaatctgAGTACACTGAATTTCGTCTTAATGCACTGTGAAGTGTGGAGGCCGTGATGAAAGGCCAAAAAAGTCAGGGTTTCTATATTGTTATTGCATCGATGCATCACCATGATGGAATGTACTCATGTGCAACGTCTCATACAACCTCCATGGAGTCAATGTGTCGCTTACTGTAGGGTGGAAAGGAAGCCTGGATGGTCCTGTCAGGTTGAGATCAGACTCTGAGCAGTTTGTTTTGCCAGTATCCAACTTTAACTTTCCAACTAACCGCCAGCTGACTGTGCATATTTATTGTGAAGGGGCAGAGGATGGTATAGTCTGTACGTTTAAACTTAGCATGTCCTCCAAAACGATTCTATGTTCACACAACGTTAATTCTTTGAGTTAGTTAAAAATATCAAATGCATCAGGACTTAATCAAAACCACAAAGGAAAGAGAGAATTACCCAAAGAATCAGACCAACAGAGAAAGACAGAGATGTGCTCTGTCTCCCCTTGACTAAAGTAACGATTCTTTCCCCTACTTTTCTATCGGAGCACCAGGGAGAGTAAATCTGAACCGATTGGTAAGGAGGCTTCTTTATTCTCATCTAAAAACCATCACAACCCCTCACCTTTTCTTAACCCCCTTTTTACCTTTGTGCACCTCATTCTGACACATCAACCCAGAGACCCCCTTTTTCTCTCACATCTCTCCATGGGTGGCGATGTCTGGTGTAACAGTGCATGTCTGCTTGCCCTTTCACGAAACAATGACGAGAGGTGCGCCCAGAGTAGAACTAGAAGCTTGCAGTAGCACATCACACCTTCAAAAAGGGACTTGCTACAAGCCATTGATGTGTTTGTAtgatgtgcatgtgtgtatatatgctttTAAAAGTTGATAACGGTTGTGACCTAGGTAAAGAGGTCTATCAAGCGGCGATGACTCTTAAAAGTTGGTTTCACATTTTTGAGGTGCAATGAGCGTTTCTTTTCAAATGAAGGGATACGATAGTTCAGATTTGAGGATCAGCGATGGCAATCGAGCGCCTCCGCATTTTAGAGTGCATCTGTGCGTTTGGTTTTACCCATGATGCAGTATTTCATCAGACACTTCAGAGCTTGAACAAGTGGGAAACTGTCTCGGTAGATCCCCATATAAGATTTATGTTAGATCACCTTTCGATTTTAGCAAGACACACACAAAAGCAAGATGTTACTGTGACAATTCAATGTGAAAACTATTAAACGGTGCCAACATAGTGTCAAGGAGCagcttttgttgttttgtttttgtattcagTACTAAAAGTACATATGGGAGGGGGGGgttctctattttttttctattagtaACTGGGAAAATAGATCAAATGTGATGAGTACTGAAAGCAATATACGTAGTAGCATGTCGTCATGTCTTGTCTTTTTATTCTGTCCGTGTAGGAGCTTTGGATTTACCTAGATGTTGAGTAGATTTGCATATACTATTTTTTAAGTTGTGAAGATGCTGCTATTGAATAAGTGATGTACTaaaatttaagataaaaaaaaacatatctggTCAGTCATTTAGCAGGATGTGGTAGTTGTAAGAGGTGTAACTAAATGCTACATTGATAATTGAATAATTGCTATATCAATGGATTAAATGAATAAACCTGTGCCAAAATAGatctttacagatttaaatgtgatttaaacaCCGTTAGTTAAGAGCAGACataattttgtaatttacaaaaaaagaaaaaatgtgaaaAGTGCCAAATAAGCCAGTTAAGATAGTGGGGGTAAAGTGActagagaagcaaaaaataaaatagacattAGCACTATAAGGTTGAGAGTTTTCTGCCCCTCAAACTAACCACTCTTTGTTCAAATAAAGGGAGGGATTCATCTCATTGGCCAAATAAAAGCAGGGTGCCATTAACACACATCCCTGGGGCTAGAAGACTGCCGAGTTAGCTTAGCATGGTTAACGTTTTATAAGTTATCAGCATTCTTAAGTCAGCCTTTTATAGTTCTGAAGATGTATTTTGTGAAGATAGATGTTATCTTTTTTGCACGTCGATATTGCATGATACCAAGTGAAgcgtggatttaaaaaaaaaaaaaaaagtgaagacaaaaaaaaaaaacaattaggcaATGTGCATTCATTTTGAGGACGAAACTTTGCATGGCAACAACAGTCCAAGCTATTAAATGagctttttcacatttttacctttttacttttaattttgctAAGACCAAGCTGGAGTTTTGTTGTCCATGAAACCTAGGCCACAGAAACCAAAACCATTCATAGTCATGGTCATATTCAGCGTCATGATTCTAGCACTCATTTTCTACAGACTTATCAATGTTTTGTGATAATTTGGAAGAGAAGTTGGGAATGGAGGGTTAATTTGCCGTCATTACCATGAAAACATGGCCGTGAATGTATTCACCACTACATAAGTTTGCATATCACTCTTTTGATCATGATTTTAGGGCTTGTGTGTCAGTACTAATATCATTAGGCTTCTGTTCTCTAGCTTGTTCTGCCATCACTGCACATTAAGCTTGTCCCATTCTCGTGTGAATATGCACTTTATATTTCTCTTCTGCTTCAAGCCACCCTAGCTACCAACAGCCCTGTTTTCCAACGAAAGCAAATGCAATGACACCGCTAAACTGCTTGAATCTTTTACCTCAGATCTCCATGAATAAAAGAGAGGGACGTCCTCGTAACTTTATAATGAAATGATGCGGCACTACTGTTTGCATAAGAATGGATTGGGCAGAAATTCCAAACTGACCAATGAATtggaaatgttatttttttgacagtgttttttgttattattaatgataataagtGCCAAAAGGGGCATGTCTGAAATCATGAATATTGTTATTTGTCCTTTCTCTTTTAAAAAGGCTAATGAAAACTGCACTGTGCTTATCGTGATTCTTTTTTACGCATAGAGCAACATGCGTCTAGTCATTTTGCACCCAGGCCGCTGGGTTTGTCACATGCGCAGTCAAGTTGAGATGAATGCAAACTTATGATTTAGCTGATGTCAAGAAGGTCATTGCTTTTATGTGGGCGCACGGCTAGAGCTTGTCGCTCTTCCAAAACCCCACACGCTCCCCCTGCCCCAGTCCAAGTCCACCCCCGGCCCCCGACAACCCGGGGTCACTCTTGAGCTCAAACCCATTGAAGCACCAGCAATGTTAGAATACATTTGTCATATCACTGttctgttcttttttattttcctgtttttatttGTACGACACTCTCTAACCTAGACCAAGTATAACAAAAATGTCATTCATATGTATCCTGTTTACTCTCCCTTTTTCTCCCTTTTGCACTTTCACTGCTCCCCTTTTTTCCAACCACTCCCCACTCTTCTGCCGACCTCCCCCTCACACCCTCCCAGACTTTCTCCTGAGTGCCAAACAAAAACAGTACCATTCCAAACTTTTTGAGTTCTCTTGTATGTTGGACATCCATTGGACGCACCCATGAACAAGCCAGCATGTTTCTCCATAACATGATGTCAGTCATGACGCCTCAACATTACCCAAAAAGTGAGCAGTAAAAGCAAGACCTGGATTAACACGGTAAAAACACGGCTGGCTACCTCTCATAAACTGCTTTTCCTAATTCTCTGTCATCTCTTCAACCTCCAGGACATCACTGATTGTGTGCCATAATGCTGGGGGCACTGTCACTCTCCTCACCCCAGAGTCTCTCCATTTGATTTTCTCGATGGAAAACATTAAAtgcaagcaaagaaaaaaaatccattttaaatggcaggtttgttcctttaacataaaaaaacatgctgagGAGTGTGTAAACGTCAGCCGCGCAGCCATCTTCTGTCTTCTGAACTTTGAACTTCTCACCCCTCATGAACTTTATTGACCTTCTTCCTCCCCTTCTATGTTCATCAACTGTTTGGACTTAAAATCTCCATTCCATCTCCAAACCTTTTTGAGACTGTGCAATTCTAGTTGAGATGATtggatttatttctctttttttaagtcATCATTGGGGAcgaacaaataataaacaaacaaaaaaaaaaagacacgcaAAAATATCAATAAGATCCAAACTGTTTCCTCCACAATttcattattttctttcattGTAAATATCTGTCAGATTTGGTTGAACTGTAACCAGAGACGTGTTCAACGTTAAAGGGGCTGGCAGCATAAAATCGCTTTTGTGGAGCCGCCATTAGGAAGTCGAGGTCAATTTAAGCAGCTCCATAAAAGACGTACTGCGTTATAGAGTCACGTATGCAGTACTGAGACCATCAAAATTTGGATCTGGCCCCTCCAAACATTGCATAATCACTACTAACCGCTAAGTTAGATTAAGATAGTGTAGGTTTCATACTTGAACTGATGGTAATTGCTAATCTCATTGTACATATCAAACGTGTCGAGTGTGAATTGTGATACGTGTCGATTAGGTGTCTTTACCATTACAGCATCTGTTcacgagacaaaaaaaaaaaagaaaagaaaaaaaagctaaagTTTCTTTGTGATGCCGAAAGGATCATTTTCATGCGTCTCAACCATGCTTGAGCTCCACATCTAATGTTTCTATGCTGCCAGCTTTGTTTTCTGATAACCCTTCATGagcttatttattttcaaactacTATACGTTATTAATAAATGGCATCAAGAAACTAGACAAAAGGGAATGACTGGAAAGATgaattactgttttgtttttagtatttTAGTGGTTTCTTTTAACATCATCCATTaactgactttaaaaaaaaaatattaaatatttaatgtaactGTAGCATTGTGTTTGTACAAAAAATAGTGAGTTGTGTTTTTTGACTTGTGGATTACCAGTGAAGTCAGCAATTTAGTGCTAATATCTATTAAGTCGTTCCTTTTATTTTCCTCCTTTCTTTTATATTTAAGGGTTATTATTTCCGACAGCAACAGCAGTcattataaatgttcattttaccATCA
>TCONS_00017121
GAGCCTCCAGAAACATCGCATCTCCGTCAAGCGCTCGTGCGGCGCTTCAACACACCATCCAAGCTCCATCCGCAGGGTTCATCCACCTGCATGCGGGATCCGCTTTCTTTCAGTTTCGCCTCTTGTACATTTCCTCGTGCTATTTATTATTCGCGCATCTTCCCAGCTTTTAGCAGTGAGAGTTCTTGCTGACCGCTGAGGTCATATATTGTTTTCCAGCAGGAGAGCGCCATCGCAGAGCCGCAAAACGAGGACGATTCCCACATCACTTGTTATTAATATCAGTCCAGCCTCGAGCCTCTGGATATTTATGCGTCTTTCGTTCTCTATCTAGCGCTGCTACGGAGGATCGACGCACCCCAAAAACCTTCATATCATCGTGGTTTCACATTTAGAAAACAGCATATCTGCGTATTGTTTGTAGGGGAGACGAGACCGAGCCTAAAGCTTCTTTATAAAAAATGATGGCCGGTGGGGCAGTGCAGCAAAACGGGATTTTCTCCAATCCGCATCATCACAATCAACAGCCGCACATGGAGTCTGATCCCCCCGATTCCCGCAAAAGACCCCTGGAGACCCCGACGGAGGCCAGCAGCACCAAGCGCACAAACACAGGAGAGGAAGGCGAATATTTCCTGAAGGTGCTGATTCCAAGCTACGCCGCCGGCTCCATTATTGGCAAGGGTGGTCAGACTATCGTCCAGCTACAGAAAGAGACAGGGGCCACCATCAAGCTCTCCAAATCCAAAGACTTCTACCCGGGAACAACAGAGCGCGTGTGCTTGATCCAGGGCACCGTAGAGGCGCTGAACAATGTCCACGACTTCATTGCAGAAAAGGTGCGCGAGATGCCGCAGAGTGCTCAGAAAACAGAGCCAGTTAGCATTCTTCAACCACAGACTACCGTCAACCCTGATCGTGTCAAACAGGCAAAGCTGATAGTGCCGAACAGCACGGCAGGACTGATCATTGGCAAGGGTGGAGCCACGGTGAAGGCTGTCATGGAACAGTCCGGCGCCTGGGTCCAGCTTTCACAAAAACCCGATGGCATCAACCTGCAGGAACGTGTTGTTACCATCAGCGGGGAGCCTGAGCAAAACCGCAAAGCTGTAGAGATCATTGTGCAGAAGATTCAGGAGGATCCACAAAGCAGCAGCTGTCTGAACATCAGCTACTCCAACATTTCTGGCCCAGTGGCCAACTCTAACCCCACCGGATCCCCGTACGCCAACTCAGCAGAGGTGATGCCAGCTGCGGCCGCAGCAGCAGCAGCCACAGCCTCCAGTCTCCTGGGGCAGGCCAGTCTGGCTGGAGTGGGTGCTTTCCCCACCACCATGTCCAGCTTCTCAGGGAATGACCTGCTGGCTATCACGTCGGCACTGAACACGTTAGCCAGCTACGGATACAATACCAACTCCCTGGGTCTTGGGCTCAACCCTGCGGCTGCCTCAGGAGTCCTTGCTGCTGTAGCCGCAAGCGCTAATCCTGCTGCAGCTGCGGCCGCTAACCTGCTAGCCTCCTACGCCAACGACGCATCCACTAGTGCTGGCCACCCAGCGACCAGTCTGGGAGGTTTCACGCTAGGCTCACTCGCTGCCGCCACTGGAGCCACCAACGGTTACCTGAGCGCCGCTTCCCCTCTGGTGGCCAGCTCCCTACTGGCCACAGAGAAGCTGGCCGAAGGGGCCAAAGATGTGGTGGAGATTGCAGTGCCGGAGAACTTGGTAGGCGCCATTTTGGGGAAAGGAGGCAAAACGCTTGTGGAGTACCAAGAACTGACGGGAGCCCGCATTCAGATCTCCAAAAAGGGAGAGTTTGTTCCTGGCACCAGAAACCGTAAAGTCACGATCACCGGATCGCCAGCCGCCACACAAGCAGCCCAATATCTTATCAGCCAGCGAATCACATATGAGCAGGGTGTGAGGGCCACCAATCCGCAGAAGGTGGGCTA
>TCONS_00017122
AGGGGCAGAGGATGGTATAGTCTGTACGTTTAAACTTAGCATGTCCTCCAAAACGATTCTATGTTCACACAACGTTAATTCTTTGAGTTAGTTAAAAATATCAAATGCATCAGGACTTAATCAAAACCACAAAGGAAAGAGAGAATTACCCAAAGAATCAGACCAACAGAGAAAGACAGAGATGTGCTCTGTCTCCCCTTGACTAAAGTAACGATTCTTTCCCCTACTTTTCTATCGGAGCACCAGGGAGAGTAAATCTGAACCGATTGAGGAGGAGGTTGCCAGTCAACTCACCCTCCGCTCATGATCCGCCACCATCCCTTACCGGCTGCCGGAGCCAGTCCTAAActattaaa

Function

symbol description
nova2 Predicted to enable mRNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome and regulation of alternative mRNA splicing, via spliceosome. Predicted to be active in cytoplasm and nucleus. Is expressed in nervous system; neural plate; and posterior cardinal vein. Orthologous to human NOVA2 (NOVA alternative splicing regulator 2).

GO:

id name namespace
GO:0000381 regulation of alternative mRNA splicing, via spliceosome biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003729 mRNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080211-1 Predicted to enable mRNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome and regulation of alternative mRNA splicing, via spliceosome. Predicted to be active in cytoplasm and nucleus. Is expressed in nervous system; neural plate; and posterior cardinal vein. Orthologous to human NOVA2 (NOVA alternative splicing regulator 2).

Ensembl:

ensembl_id ENSDARG00000017673

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017119 False 2309 mRNA 0.54 5 28685625 28764699
TCONS_00017118 False 2372 mRNA 0.53 6 28685625 28764699
TCONS_00017120 False 8894 mRNA 0.43 5 28685892 28766275
TCONS_00017121 False 1951 mRNA 0.55 4 28685979 28759482
TCONS_00017122 True 356 processed_transcript 0.44 2 28761563 28766824

Neighbor

gene id symbol gene type direction distance location
XLOC_008574 BX088540.1 coding upstream 57723 28598647 ~ 28627902 (+)
XLOC_008573 NA coding upstream 133948 28548626 ~ 28551677 (+)
XLOC_008572 ankrd13b coding upstream 145975 28482862 ~ 28539650 (+)
XLOC_008571 pitpnaa coding upstream 260614 28410664 ~ 28425011 (+)
XLOC_008570 slc43a2a coding upstream 279883 28368644 ~ 28405742 (+)
XLOC_008576 gipr coding downstream 173528 28940352 ~ 28974120 (+)
XLOC_008577 clip3 coding downstream 222749 28989573 ~ 29006189 (+)
XLOC_008578 si:ch211-137a8.2 coding downstream 258071 29024895 ~ 29071870 (+)
XLOC_008579 si:ch211-137a8.4 coding downstream 319131 29085955 ~ 29091807 (+)
XLOC_008580 capns1b coding downstream 346792 29113616 ~ 29122830 (+)
XLOC_008463 BX663520.1 misc upstream 7433343 21252191 ~ 21252282 (+)
XLOC_008567 NA non-coding upstream 457191 28222431 ~ 28228434 (+)
XLOC_008564 NA non-coding upstream 521658 28160893 ~ 28163967 (+)
XLOC_008561 NA non-coding upstream 825606 27857395 ~ 27860019 (+)
XLOC_008583 BX537104.1 non-coding downstream 394832 29161656 ~ 29271467 (+)
XLOC_008587 NA non-coding downstream 786219 29553043 ~ 29643810 (+)
XLOC_008588 NA non-coding downstream 828760 29595584 ~ 29597117 (+)
XLOC_008591 dre-mir-99-1 non-coding downstream 1028759 29795583 ~ 29795666 (+)
XLOC_008592 dre-let-7c-1 non-coding downstream 1028999 29795823 ~ 29795929 (+)

Expression


Co-expression Network