Gene
RNA
| Item | Value |
|---|---|
| gene id | G139798 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000027 |
| NCBI id | null |
| chromosome length | 10680226 |
| location | 2682270 ~ 2682692 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| description |
|---|
| PREDICTED: protein cornichon homolog 3-like isoform X2 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU158872 | True | 423 | lncRNA | 0.40 | 1 | 2682270 | 2682692 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000027_02460101_02470648 | DPYS | coding | downstream | 211465 | 2459265 ~ 2470805 (-) |
| CI01000027_02314898_02317288 | NA | coding | downstream | 364962 | 2314551 ~ 2317308 (-) |
| CI01000027_02240021_02241453 | NA | coding | downstream | 440817 | 2239996 ~ 2241453 (-) |
| CI01000027_02226447_02227499 | NA | coding | downstream | 454771 | 2225781 ~ 2227499 (-) |
| CI01000027_02147653_02152768 | NA | coding | downstream | 528784 | 2147557 ~ 2153486 (-) |
| CI01000027_02742168_02773304 | NA | coding | upstream | 59476 | 2742168 ~ 2773304 (-) |
| CI01000027_02840202_02843749 | NA | coding | upstream | 156790 | 2839482 ~ 2845691 (-) |
| CI01000027_02950348_02954214 | SQLE, SQLEA | coding | upstream | 267414 | 2950106 ~ 2954214 (-) |
| CI01000027_02961909_02972343 | RNF144B | coding | upstream | 279072 | 2961764 ~ 2972343 (-) |
| CI01000027_02984235_02987159 | CCDC127, CCDC127A | coding | upstream | 301315 | 2984007 ~ 2987159 (-) |
| G139797 | NA | non-coding | downstream | 238 | 2681747 ~ 2682032 (-) |
| G139796 | NA | non-coding | downstream | 5500 | 2676553 ~ 2676770 (-) |
| G139795 | NA | non-coding | downstream | 7438 | 2674588 ~ 2674832 (-) |
| G139784 | NA | non-coding | downstream | 42227 | 2639291 ~ 2640043 (-) |
| G139778 | NA | non-coding | downstream | 53928 | 2628083 ~ 2628342 (-) |
| G139805 | NA | non-coding | upstream | 11523 | 2694215 ~ 2694424 (-) |
| G139806 | NA | non-coding | upstream | 12220 | 2694912 ~ 2695186 (-) |
| G139807 | NA | non-coding | upstream | 12534 | 2695226 ~ 2695437 (-) |
| G139839 | NA | non-coding | upstream | 50953 | 2733645 ~ 2734317 (-) |
| G139743 | NA | non-coding | upstream | 54656 | 2737348 ~ 2738071 (-) |
| CI01000027_02119227_02124423 | NA | other | downstream | 556242 | 2119131 ~ 2125142 (-) |
| CI01000027_01303308_01319462 | NR2F5, NR2F1, NR2F1.L, NR2F2 | other | downstream | 1362109 | 1302034 ~ 1321178 (-) |
| CI01000027_01241417_01245177 | NA | other | downstream | 1435293 | 1240478 ~ 1246267 (-) |
| G139117 | NA | other | downstream | 2444691 | 234212 ~ 237579 (-) |
| G140118 | NA | other | upstream | 818842 | 3509352 ~ 3584679 (-) |
| CI01000027_03787377_03788902 | NA | other | upstream | 1104686 | 3787377 ~ 3790279 (-) |
| CI01000027_03922380_03931033 | NA | other | upstream | 1239704 | 3922242 ~ 3931033 (-) |
| G141481 | NA | other | upstream | 1689555 | 4372247 ~ 4412810 (-) |
| G141488 | NA | other | upstream | 1824783 | 4507475 ~ 4508971 (-) |
