XLOC_008577 (clip3)


Basic Information

Item Value
gene id XLOC_008577
gene name clip3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 28989573 ~ 29006189 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017125
GACTGGTCCCATGACTGGTCCAGCCGTGAATCACATCCGTGACGCAAGCAGAGAGAAGGACAAGGCGCAGCATCCTCTCCATCCTCCATAGCACAACAACGACTCACAAAAGAGAGGAAACCAAATCGCGATTTCGAGGCTTGTTGTCAGGCCCAATCACATAAGCAGAATGACTAAAGAGGAAACTTCCGATGTGGAAGAAGCTCAGCCGACCTCTGAGTTCGTCAGCCCTGTCCATGAGCCCCGCAAGAAGCCCATGGTGCATCCTGCTGCCCAGGCTCCACTGCCCAAGGACTATGCGTTCACCTTCTTTGATCCAAATGATCCGGCCTGCATGGAGATTCTGACCGATCCTCGAACAACAATCCCAGAACTGTTTGCCATTATCCGTCAATGGGTTCCACAAGTTCAACATAAGATCGACATCATAGGCAATGAGATTTTAAAGCGAGGCTGCCACGTCAATGACCGCGATGGCCTGACGGACATGACTCTACTCCACTACTGCTGCAAAGCTGGGGCTCACGGAGTCGGCGACCCTGAGGCAGCGCTCCGGCTGTCCAATCAGCTGTTAGCTCAGGGAGCCGATGTCAGTCTGCGCAGTCGCTGGACTAACATGAATGCCCTCCATTATGCCGCTTACTTCGATGTGCCAGAACTGATTCGCATTTTGCTGAAAGCCTCCAAGCCAAAAGTGCTTAACTCCACCTGCAGTGACTTTTGTCATGGCACAGCCCTCCACATCGCTGCCTCAAACCTCTGCCTGGGTGCTGTCAAGTGTCTGCTGGAGCACGGAGCCAACCCTGCTGTCAGAAATGATAAAGGTCAAGATCCTGCTGAGGTTGTCCCAGACCCCATGGACATGAGTCTGGATAAAGCTGAGGCCGCAATGGTGGCTAAAGAGCTGAAACAGCTGCTGCTGGATGCAGTTCCTCTCAGCTGTAATCTCCCCCGAGCCACCCTGCCCAACTACGACAACATCCCCGGAAACCTCATGCTCTCCTCCCTCGGCCTCAAACTTGGGGACCGTGTGGTGCTGGACGAAACAAAGACTGGCACACTGCGTTTTTGTGGTACCACTGAGTTTGCTAGTGGCCAGTGGGTCGGTCTTGAGCTGGACGAGCCGGAGGGCAAGAATGACGGGAGTGTGGGTGGAATCCGCTATTTTATCTGCTCCGCAAAGCAAGgGATCTTTGCTCCTGTATCAAAAATCACCAAAGCTGTTGAACAGACTCCTTCTTCAGTCACCTCCACACCAAAAACCCCTCGCATGGATCTGTCCCGCGTAACTGGCAAGATCAAGAAggagaaaaaagagaaagatCGCGAAAAGACTCCAAGAAAGAAGTCCCTGTCCGGGGTCAGTTTGGATCCTGATGGAGTGAAGGTTGAGGTTGGAGATCAGGTGCTGGTGGCAGGACAAAAACAAGGGATTGTCCGCTTTTTCGGAAAGACTGACTTTGCTCCTGGATACTGGTTTGGTGTCGAACTGGAGCAGCCCACCGGAAAGCATGATGGCAGTGTGTTTGGAGTACGCTACTTCCACTGTTTGCCCAAATATGGAGTTTTTGCACCACCATCCCGTGTTCAGAGAATTGGAGGGCCCAAAGATCCCCAAGGAGACGGGACGCTAGTGAAGAAAGTCCACCAGGTGACTATGTCTCAACCGAAGCGTAATTTTAATGCGGTGCGATCTCCGAAAGACATAACATCTGAAAGTTCCATATCCAGCAGGTTGCTGTTCTGTTGCTGGTTTCCCTGGATGCTCCGTGCGGAAATGCAGTCCTAAAGTCACCGGTTAcatctttatttctctctctctctctttctctcttttcctcTTTCCGTTCCACCTATCACCCACTCTCTTTGTACTTCCATTATTCATCCGTGCTTTTCTCTCTGTGATTCACCCAGACTGCTGTCCCATCCCTTTGACGGCAATTCAATAGCAAAAAAATAGTGCCTTGTCAAGTAAATAACGTCCTGCATTCCAATGATCGAATTATAGATGAACAATCTTTTATGAAATCAATATAAGGGAAAATCACCACCACTATAAGCCATTCATATCTCTTTATCTGCTTTTTCCCCTTTGCTAAATAACATTGGCAGTATTCAAGCTTGATAATATACTcatgaaacattttaatttgtaaaggTGCTTTTTTTGGTTAGGTTTTTTAAACATGCTGCTGTATTATGCACCTTTATTGTCTTACTTTTCAGTATTTTATTGCAGATAATCTTACATTTTAATGCCTTTAAATGGGTTAGTGTAGTAGGTGAAATCTTATTAGTGAACAACATCAACTAGTCTAAAAATATTGATGCTGCCAGTGTGAAAACATAACAGGGTTTTCAACATTTAAGCCCAATGCTTTCACCATCCACAGTGAAATGTTTAAGTGTCTAGAGTCAAATATAATATATTGCATGAAATAAGCAGGCATGGGCACGTTTTGGGGTCAAAAAACGGCTCTGAAATGAGGCGAGAGGACtgctttaaatattaaatgcTAATATATCACTTTTCGTTCACTTAAAATCTTCCACAAAACCAAAGCGCAAGCTCCATGATGTAACGAAAGATTATTGCTCCAAAATAATGTACACCATACATCCATAACCAGTGCTGGGTAGATTACTTACGAATTGTAGTCTGTTATTAATCACAATTGTAGTCAGTAAAATAATATAGGTTACTTATTGTAGGTAATGTATTCTGAGTACTTTTGGATAACTATTCAGAACTGAATTTGAAAGGATTTTACATGACCATCctgcattgttattattattaaacaaaggCTAAAAAAGTTAGGACTgccgcctcacatcaagaaggttgctggttcgagtcctggctggaccatttg

Function

symbol description
clip3 Predicted to enable microtubule plus-end binding activity. Predicted to be involved in cytoplasmic microtubule organization. Predicted to be active in cytoplasm; microtubule plus-end; and nucleus. Orthologous to human CLIP3 (CAP-Gly domain containing linker protein 3).

GO:

id name namespace
GO:0031122 cytoplasmic microtubule organization biological_process
GO:0035371 microtubule plus-end cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0051010 microtubule plus-end binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131127-193 Predicted to enable microtubule plus-end binding activity. Predicted to be involved in cytoplasmic microtubule organization. Predicted to be active in cytoplasm; microtubule plus-end; and nucleus. Orthologous to human CLIP3 (CAP-Gly domain containing linker protein 3).

Ensembl:

ensembl_id ENSDARG00000054456

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017125 True 2879 mRNA 0.46 14 28989573 29006189

Neighbor

gene id symbol gene type direction distance location
XLOC_008576 gipr coding upstream 15453 28940352 ~ 28974120 (+)
XLOC_008575 nova2 coding upstream 222749 28685625 ~ 28766824 (+)
XLOC_008574 BX088540.1 coding upstream 361671 28598647 ~ 28627902 (+)
XLOC_008573 NA coding upstream 437896 28548626 ~ 28551677 (+)
XLOC_008572 ankrd13b coding upstream 449923 28482862 ~ 28539650 (+)
XLOC_008578 si:ch211-137a8.2 coding downstream 18706 29024895 ~ 29071870 (+)
XLOC_008579 si:ch211-137a8.4 coding downstream 79766 29085955 ~ 29091807 (+)
XLOC_008580 capns1b coding downstream 107427 29113616 ~ 29122830 (+)
XLOC_008581 zgc:101731 coding downstream 116842 29123031 ~ 29138266 (+)
XLOC_008582 zgc:113149 coding downstream 133937 29140126 ~ 29152619 (+)
XLOC_008463 BX663520.1 misc upstream 7737291 21252191 ~ 21252282 (+)
XLOC_008567 NA non-coding upstream 761139 28222431 ~ 28228434 (+)
XLOC_008564 NA non-coding upstream 825606 28160893 ~ 28163967 (+)
XLOC_008561 NA non-coding upstream 1129554 27857395 ~ 27860019 (+)
XLOC_008583 BX537104.1 non-coding downstream 155467 29161656 ~ 29271467 (+)
XLOC_008587 NA non-coding downstream 546854 29553043 ~ 29643810 (+)
XLOC_008588 NA non-coding downstream 589395 29595584 ~ 29597117 (+)
XLOC_008591 dre-mir-99-1 non-coding downstream 789394 29795583 ~ 29795666 (+)
XLOC_008592 dre-let-7c-1 non-coding downstream 789634 29795823 ~ 29795929 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000072_05285816_05295678 CLIP3 coding CI01000072 null 5285775 ~ 5296457 (+)
bowfin (Amia calva) AMCG00013583 clip3,LOC106612689,LOC106580752 coding CM030125.1 CM030125.1 36977272 ~ 37013396 (+)