G139743


Basic Information

Item Value
gene id G139743
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 2737348 ~ 2738071 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU158812
TGTTTGTGTCTATTTCCTAAACATGTTGTGAAACTAATATTATAATATTAATATAATATTTATTTAATTAATCATCATCCTCAATGTTCAGGTTGGCTGGGTTCTGCTGCTGATTTGCTTTTGTTTGTGACTGCTAAATGTGTACAAAAAAGGAATGGGTGATGAGCAAGCTAAATGAACAATTAAATAGTTACTTATTTCGATGCTTAATGTACAATGATTGTGAAAAATAACCTTTTTTCAACTGTCAAAATGTACTGTAATTATGATAACAGCATACTCTATACTTACTATGTGAGCTCAAGTGCATCTCCAGAGCACGAGGGTTGCTGAAGCTCTTGTTGCATTGTGGGAAAGGGCAGATACTGGGAGTTTGGTGGGAATTGGCGTCAGTCTCTTCGGGGACATTATCGGGTTCCCTCTGCCGCCCGCTGCAGTAATACATCAGGTGGGCCTGAAGGTTCCTCTCACTCCTGTACCATATCCCACATGCTTTACAGGGGAAGATGTCCTCTGAAACACAGAGACAAGCATGTGAAGGCAAAACTACAACCAGTGCTTCAACAGTTTTGCTGAGCTGAACTTTTATGTTCTTTTATACACAGTTATTGCCAATTGCCAATCATATTTATGAATGAAATTCTCATCATTTGGCTATGGAATTGCATTTAGTTTTTTTTTCTTCTTCTTCTGTAGAAGTGGAACTGAAATGGCTAAGAGGAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU158812 True 724 lncRNA 0.38 1 2737348 2738071

Neighbor

gene id symbol gene type direction distance location
CI01000027_02460101_02470648 DPYS coding downstream 266543 2459265 ~ 2470805 (-)
CI01000027_02314898_02317288 NA coding downstream 420040 2314551 ~ 2317308 (-)
CI01000027_02240021_02241453 NA coding downstream 495895 2239996 ~ 2241453 (-)
CI01000027_02226447_02227499 NA coding downstream 509849 2225781 ~ 2227499 (-)
CI01000027_02147653_02152768 NA coding downstream 583862 2147557 ~ 2153486 (-)
CI01000027_02742168_02773304 NA coding upstream 4097 2742168 ~ 2773304 (-)
CI01000027_02840202_02843749 NA coding upstream 101411 2839482 ~ 2845691 (-)
CI01000027_02950348_02954214 SQLE, SQLEA coding upstream 212035 2950106 ~ 2954214 (-)
CI01000027_02961909_02972343 RNF144B coding upstream 223693 2961764 ~ 2972343 (-)
CI01000027_02984235_02987159 CCDC127, CCDC127A coding upstream 245936 2984007 ~ 2987159 (-)
G139839 NA non-coding downstream 3031 2733645 ~ 2734317 (-)
G139807 NA non-coding downstream 41911 2695226 ~ 2695437 (-)
G139806 NA non-coding downstream 42162 2694912 ~ 2695186 (-)
G139805 NA non-coding downstream 42924 2694215 ~ 2694424 (-)
G139798 NA non-coding downstream 54656 2682270 ~ 2682692 (-)
G139845 NA non-coding upstream 50278 2788349 ~ 2855600 (-)
G139929 NA non-coding upstream 191237 2929308 ~ 2929766 (-)
G139883 NA non-coding upstream 209260 2947331 ~ 2947916 (-)
G139939 NA non-coding upstream 374197 3112268 ~ 3114186 (-)
CI01000027_03117518_03132307 RUNDC3B non-coding upstream 378303 3115633 ~ 3132307 (-)
CI01000027_02119227_02124423 NA other downstream 611320 2119131 ~ 2125142 (-)
CI01000027_01303308_01319462 NR2F5, NR2F1, NR2F1.L, NR2F2 other downstream 1417187 1302034 ~ 1321178 (-)
CI01000027_01241417_01245177 NA other downstream 1490371 1240478 ~ 1246267 (-)
G139117 NA other downstream 2499769 234212 ~ 237579 (-)
G140118 NA other upstream 763463 3509352 ~ 3584679 (-)
CI01000027_03787377_03788902 NA other upstream 1049307 3787377 ~ 3790279 (-)
CI01000027_03922380_03931033 NA other upstream 1184325 3922242 ~ 3931033 (-)
G141481 NA other upstream 1634176 4372247 ~ 4412810 (-)
G141488 NA other upstream 1769404 4507475 ~ 4508971 (-)

Expression


Co-expression Network